GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001916-TA|BGIBMGA001916-PA|undefined
         (269 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    25   0.94 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.2  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.9  
EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    23   3.8  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              22   6.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.6  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.6  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 135 FGLDDNDDSLRKRNIIKTPNFTSNTTSQEDIDSILKYHQNMQEKVAENMVMLTKN 189
           + L  N  +LRKR+++K  NFT    ++    ++L   +  +E+    ++  +KN
Sbjct: 462 YHLYTNLTALRKRDVLKKGNFTIEILNK----TVLAVVRQSEEEAVSLLINFSKN 512


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 173 QNMQEKVAENMVMLTKNLKEQSQIASTIIKADTEALKKSSDLTDRNLSSLKVE 225
           Q ++   AE  V ++   KEQ      I    + A K+   L DR + S K+E
Sbjct: 28  QELKALFAEPPVRVSNGGKEQDFRFEAIQCLQSSAFKEIKTLPDRGMWSSKIE 80


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 137 LDDNDDSLRKRN--IIKTPNFTSNTTSQEDIDSILKYHQNMQEKVAENMVMLTKNLKEQS 194
           L  N    RKR   I++      N T     D +    +   EK A N  +  K+ KEQ+
Sbjct: 103 LSSNTQITRKRRVGIVENQYAVENNTGSSLCDLVQGLERLFDEKNAGNNKITMKSKKEQN 162


>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
          isomerase protein.
          Length = 247

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 7/25 (28%), Positives = 14/25 (56%)

Query: 39 IDGNWRLKKYVESLSSMITELKTGP 63
          + GNW++      ++ ++  LK GP
Sbjct: 7  VGGNWKMNGTKSEINDIVGFLKKGP 31


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 23  VRQLLSKCELIAKEESIDGNWRLKKYVESLS 53
           V++ +S+C+ IAK ++ +  +R  K    LS
Sbjct: 108 VQKAISECKGIAKGDNCEYAYRFNKCYAELS 138


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 94   IEKLEAVQQ-LSHGAATMSVDATQEIHQKTVAKYGVELRSEL 134
            ++ + AV   + HG ++ S D +    QK++ + G   RS L
Sbjct: 1808 LKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSRSSL 1849


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 94   IEKLEAVQQ-LSHGAATMSVDATQEIHQKTVAKYGVELRSEL 134
            ++ + AV   + HG ++ S D +    QK++ + G   RS L
Sbjct: 1804 LKHIRAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSRSSL 1845


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.126    0.345 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,688
Number of Sequences: 429
Number of extensions: 2424
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 7
length of query: 269
length of database: 140,377
effective HSP length: 57
effective length of query: 212
effective length of database: 115,924
effective search space: 24575888
effective search space used: 24575888
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 43 (21.4 bits)