BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001915-TA|BGIBMGA001915-PA|IPR000243|Peptidase T1A, proteasome beta-subunit, IPR006593|Cytochrome b561 / ferric reductase transmembrane, IPR001353|20S proteasome, A and B subunits (424 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch... 218 1e-57 SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy... 111 2e-25 SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 109 7e-25 SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc... 87 3e-18 SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc... 72 2e-13 SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 71 2e-13 SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom... 63 6e-11 SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 38 0.003 SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 31 0.40 SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 30 0.54 SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom... 29 1.2 SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|... 29 1.6 SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 29 1.6 SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce... 28 2.9 SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c... 27 3.8 SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 27 5.0 SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||... 27 5.0 SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 27 6.6 SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|... 27 6.6 >SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Schizosaccharomyces pombe|chr 1|||Manual Length = 248 Score = 218 bits (533), Expect = 1e-57 Identities = 111/224 (49%), Positives = 152/224 (67%), Gaps = 22/224 (9%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 GRLYQVEYA+EAI+HAG +LGI+A DGI+LAAE++ T+KLL++ +EK+Y + D+M+C+ Sbjct: 16 GRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCA 75 Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305 VAG+T+DAN+L N R + Q+YL + E +PC+ RPFGVS L Sbjct: 76 VAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFL 135 Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365 Y GWD GYQL+QS+PSGNYG W+A IG NS + S ++QEYK+ + L EA A+A+K Sbjct: 136 YAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKD-DINLDEASAMAVK 194 Query: 366 VLSKTLDMTKLTPEKVEMATLTR--KDNKTIIRILTNTEVENSL 407 LSKTLD LT EK+E AT+T+ NK + +I + E+ L Sbjct: 195 FLSKTLDSNSLTHEKIEFATITKDTTKNKMVCKIWKSDEINEVL 238 >SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces pombe|chr 1|||Manual Length = 247 Score = 111 bits (266), Expect = 2e-25 Identities = 71/208 (34%), Positives = 114/208 (54%), Gaps = 29/208 (13%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 GRL+QVEYA+EAI T++G+ D ++L E+R T+ L+ E EK+++++ + C+ Sbjct: 19 GRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLM-ESHSVEKLFEIDSHIGCA 77 Query: 265 VAGITSDANVLTNELRLIAQRYLLQY-------------------------GESIPCKRP 299 ++G+T+DA + R+ Q + Y GE RP Sbjct: 78 ISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRP 137 Query: 300 FGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEA 359 FGV++L G D+H G QLY S+PSG Y ++A IG+ S A S L +E+ + TL EA Sbjct: 138 FGVALLIAGIDEH-GPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEF-HKDMTLEEA 195 Query: 360 QALAIKVLSKTLDMTKLTPEKVEMATLT 387 + L +KVL + ++ KL + V++A +T Sbjct: 196 EVLILKVLRQVME-EKLDSKNVQLAKVT 222 >SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces pombe|chr 3|||Manual Length = 245 Score = 109 bits (262), Expect = 7e-25 Identities = 76/205 (37%), Positives = 112/205 (54%), Gaps = 24/205 (11%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 G+L Q+EYA+ A++ TS+GI ATDG++LA E++ T++L EK+ + D+ Sbjct: 16 GKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASL-EKVCAITPDIGMV 74 Query: 265 VAGITSDANVLTNELRLIAQR-YLLQYGESIPCK-------------------RPFGVSI 304 +G+ D VL ++ R +AQ Y Y E P K RPFGVS+ Sbjct: 75 YSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSL 134 Query: 305 LYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAI 364 L G D+ G LYQ DPSG Y WKAT IG +S AA + L++ Y + E L +A AI Sbjct: 135 LVAGMDEK-GPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYND-ELELDDAVHTAI 192 Query: 365 KVLSKTLDMTKLTPEKVEMATLTRK 389 L +T + +LT + +E+A ++ K Sbjct: 193 LALKETFE-GELTEDNIEIAVVSTK 216 >SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces pombe|chr 2|||Manual Length = 259 Score = 87.4 bits (207), Expect = 3e-18 Identities = 63/202 (31%), Positives = 105/202 (51%), Gaps = 25/202 (12%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 GRL QVEY EA+ T++ + + I++ ER+N KL + F +KI +++ + + Sbjct: 15 GRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNF-QKIAMVDNHVCLA 73 Query: 265 VAGITSDANVLTNELRLIAQR------------YLLQYGESIPCK-------RPFGVSIL 305 AG+ +DA +L ++ R+ AQ YL +Y + K RPFGVS L Sbjct: 74 FAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTL 133 Query: 306 YMGWDKHYGY-QLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAI 364 G+D ++YQ++P+G Y WKAT IG S AA L++ +KE L+ + + + Sbjct: 134 IAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEG---LSRDETIHL 190 Query: 365 KVLSKTLDMTKLTPEKVEMATL 386 V S L++ + +E+A + Sbjct: 191 AV-SSLLEVVQTASGNIELAIM 211 >SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 244 Score = 71.7 bits (168), Expect = 2e-13 Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 27/225 (12%) Query: 205 GRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVC 263 GRLYQVEYA +A ++AG TS+G+ + + ++++ +KL+D + ++ + + C Sbjct: 18 GRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLID-ASTVKHVFPITKGIGC 76 Query: 264 SVAGITSDANVLTNELRLIAQRYLLQYGESIPC-------------------KRPFGVSI 304 + G +DA + R A + + G +PC RP GV++ Sbjct: 77 VMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAM 136 Query: 305 LYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKEN--ETTLAEAQAL 362 + D G L++ DP+G Y G+KAT G ++ L++ +K++ + L + Sbjct: 137 TLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVET 196 Query: 363 AIKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407 I+ L +L T ++++ + +D+K R+L+ E+E L Sbjct: 197 GIQALMSSLS-TDFKSTELQIGVV--EDDKP-FRVLSVEEIEAHL 237 >SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Schizosaccharomyces pombe|chr 1|||Manual Length = 272 Score = 71.3 bits (167), Expect = 2e-13 Identities = 56/211 (26%), Positives = 104/211 (49%), Gaps = 25/211 (11%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 GRL+QVEYA+EAI ++G+++ +L A +RN +L + +K+ +++D + + Sbjct: 17 GRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSS---YQKKLIRIDDHIGIA 73 Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPC-------------------KRPFGVSIL 305 +AG+ DA VL+N ++ A + IP +RP+GV L Sbjct: 74 IAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFL 133 Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL-AI 364 +G+D+ G L + PSG + T +G+ S +A + +++ + E L A+ Sbjct: 134 VIGYDES-GPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSAL 192 Query: 365 KVLSKTLDM-TKLTPEKVEMATLTRKDNKTI 394 + L TL +LT E V ++ + + + T+ Sbjct: 193 RALRDTLSKDQELTEENVSISVIGKDEKYTL 223 >SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharomyces pombe|chr 3|||Manual Length = 253 Score = 63.3 bits (147), Expect = 6e-11 Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 22/198 (11%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 GRL+Q EYA +A+ +A T +GI DG++LA E+ T+KLL + + +I ++ + + Sbjct: 18 GRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLL-KPRVNNRIGSVDRHIGIA 76 Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP----------------C---KRPFGVSIL 305 G D + R A + YG IP C RPFGV Sbjct: 77 TTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSF 136 Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365 +D G LY +P+G Y G+ G A + L ++ + + +A A + Sbjct: 137 VATYDSE-GPHLYMVEPNGVYWGYNGAAAGKGRQVARNEL-EKLNFSSLKMKDAVKEAAR 194 Query: 366 VLSKTLDMTKLTPEKVEM 383 +L T D ++EM Sbjct: 195 ILYATHDEENNKEHEIEM 212 >SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosaccharomyces pombe|chr 1|||Manual Length = 225 Score = 37.9 bits (84), Expect = 0.003 Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 17/139 (12%) Query: 217 ISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDANVLT 276 + + GT++ I +LA + R+ N F +++++ DD+V +G +DA L Sbjct: 10 VQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALV 69 Query: 277 NELRLIAQRYLLQY-----GESIPC--------KR--PFGVSILYMGWDKHYGYQLYQSD 321 ++ Y + +S C KR P+ V G DK ++Y D Sbjct: 70 KRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFD 129 Query: 322 PSGNYGGWKATCIGNNSAA 340 P G+Y + C SAA Sbjct: 130 PVGSYE--REWCRAGGSAA 146 >SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 516 Score = 30.7 bits (66), Expect = 0.40 Identities = 10/31 (32%), Positives = 20/31 (64%) Query: 52 WRSICQLFNLLQHMQVAIVVFSLWHFALTSA 82 W +C+LF + M +A+ +F ++H A+ +A Sbjct: 130 WAPMCELFGRRRPMIIAVFIFCIFHIAVATA 160 >SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schizosaccharomyces pombe|chr 3|||Manual Length = 499 Score = 30.3 bits (65), Expect = 0.54 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%) Query: 183 LFSSKVRLMVKSGPVKILHLAVGRLYQVEYAMEAI--SHAGTSLGILAT-DGILLAAERR 239 LF S + + S + IL + Q+EY+ME + A +GIL DG+L E Sbjct: 239 LFVSNIDNLGASVDLNILSHVIDN--QIEYSMEITDKTKADIKVGILVNQDGLLRLLETN 296 Query: 240 NTNKLLDEVFFSEKIYK 256 + E F S+K++K Sbjct: 297 QVPEQHREEFMSDKVFK 313 >SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 441 Score = 29.1 bits (62), Expect = 1.2 Identities = 14/50 (28%), Positives = 25/50 (50%) Query: 29 ITRAPAAYDEESGDLYNSSWDSAWRSICQLFNLLQHMQVAIVVFSLWHFA 78 + +P+ + S+W++A LFNLL+ M +VV +L H + Sbjct: 132 LNASPSIEQNKYASFLASAWNTALLHFTPLFNLLEGMASLLVVQALGHLS 181 >SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 539 Score = 28.7 bits (61), Expect = 1.6 Identities = 13/33 (39%), Positives = 20/33 (60%) Query: 58 LFNLLQHMQVAIVVFSLWHFALTSAPSGAISNL 90 L +LLQ+ +V VFSL H T + ++SN+ Sbjct: 109 LTSLLQYGEVVTTVFSLGHLGKTELAAASLSNM 141 >SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 745 Score = 28.7 bits (61), Expect = 1.6 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 6/91 (6%) Query: 330 KATCIGNNSAAAVSSLKQEYK--ENETTLAEAQ-ALAIKVLSKTLDMTKLTPEKVEMAT- 385 K+T I ++S+ + S ++ Y +NE + ++AQ A+ V + ++ EK A Sbjct: 588 KSTYIDDSSSNSPSDIESNYSADDNEISKSKAQNAIDFNVTNTHSPSRSISSEKSYKAAE 647 Query: 386 --LTRKDNKTIIRILTNTEVENSLPNSKRPK 414 K N ++ + N E E S P+S K Sbjct: 648 RGQQDKHNDVLVDLNPNVEAEKSNPHSNSQK 678 >SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 442 Score = 27.9 bits (59), Expect = 2.9 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 10/126 (7%) Query: 57 QLFNLLQHMQVAIVVFSLWHFALTSAPSGAISNLQLHIIFAGTGYQLFLVEAIMTLHRHN 116 + FN+ H+ IV F++ + S+ S SN+ I+ FL+ A+ L Sbjct: 207 ETFNIWTHLSAFIVFFAVLAYFYPSSSSWVSSNVSNRIVRI-----FFLLSAMKCLGCSV 261 Query: 117 SWS--SQLSKDSKRIIHGCLQLIGALFVLAGTFLALAEVNMQINTAHGICGVIALAFTLV 174 W S LS C+ +G ++A + ++ V G I +AFT Sbjct: 262 IWHTFSSLSNYKHMRCAACMDYVGISALIAASIIS---VEYHAFVCQGPLRFIFIAFTGT 318 Query: 175 SFISGI 180 + GI Sbjct: 319 LGLIGI 324 >SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 288 Score = 27.5 bits (58), Expect = 3.8 Identities = 17/81 (20%), Positives = 42/81 (51%), Gaps = 4/81 (4%) Query: 128 RIIHGCLQLIGALFVLAGTFLALAEVNMQINTA--HG--ICGVIALAFTLVSFISGIIAL 183 +++ G + A+++L F AL V++ I+ G V + T+ +FI+ +IA+ Sbjct: 172 KVLKGACYAMRAMYILGFIFFALTIVSIVISCLPFFGPLFLNVFSFFATIFTFIAAVIAV 231 Query: 184 FSSKVRLMVKSGPVKILHLAV 204 + ++ + ++IL++ + Sbjct: 232 ATYRIAISELEKNIEILNIPI 252 >SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 190 Score = 27.1 bits (57), Expect = 5.0 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 8/69 (11%) Query: 309 WDKHYGYQLYQSDPSG--NYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKV 366 +DK YG Q D N G K +N+ + L +E K E EA+ +A KV Sbjct: 46 YDKLYGEQDLSKDLENTLNVSGTK----DSNAEEQPAKLTKEEKRVERE--EAKRMASKV 99 Query: 367 LSKTLDMTK 375 L KT++ TK Sbjct: 100 LIKTIERTK 108 >SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||Manual Length = 309 Score = 27.1 bits (57), Expect = 5.0 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%) Query: 275 LTNELRLIAQRYLLQYGESIPCKRPFGVSILYMGWDKHYGYQLYQSD 321 LT+ + A ++L QY + F +S + W + +GY LY +D Sbjct: 161 LTSTTMMAAAKFLSQYIKDE--SNSFVISSDFCHWGRRFGYTLYLND 205 >SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 356 Score = 26.6 bits (56), Expect = 6.6 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 59 FNLLQHMQVAIVVFSLWHFALTSAPS-GAISNLQLH---IIFAGTGYQLFLVEAIMTLHR 114 FN L+ M+ W FA+ S G++ + L ++ GY+ FLV A T + Sbjct: 225 FNALRDMRQYPSFLRSWWFAIKSEGELGSVFLISLICSVLVLCLLGYEFFLVYAGYTTNE 284 Query: 115 HNSWS 119 WS Sbjct: 285 SEKWS 289 >SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|||Manual Length = 531 Score = 26.6 bits (56), Expect = 6.6 Identities = 11/26 (42%), Positives = 17/26 (65%) Query: 227 LATDGILLAAERRNTNKLLDEVFFSE 252 L + GIL +R+NT L+ V++SE Sbjct: 6 LLSKGILSIIKRKNTGNLIPHVYYSE 31 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.319 0.132 0.384 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,851,329 Number of Sequences: 5004 Number of extensions: 73637 Number of successful extensions: 243 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 213 Number of HSP's gapped (non-prelim): 26 length of query: 424 length of database: 2,362,478 effective HSP length: 75 effective length of query: 349 effective length of database: 1,987,178 effective search space: 693525122 effective search space used: 693525122 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 55 (26.2 bits)
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