SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001915-TA|BGIBMGA001915-PA|IPR000243|Peptidase T1A,
proteasome beta-subunit, IPR006593|Cytochrome b561 / ferric reductase
transmembrane, IPR001353|20S proteasome, A and B subunits
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha 3|Sch...   218   1e-57
SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomy...   111   2e-25
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy...   109   7e-25
SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyc...    87   3e-18
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    72   2e-13
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    71   2e-13
SPCC1795.04c |||20S proteasome component alpha 7|Schizosaccharom...    63   6e-11
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar...    38   0.003
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    31   0.40 
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    30   0.54 
SPAC23C11.01 |||ER membrane protein, ICE2 family|Schizosaccharom...    29   1.2  
SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|...    29   1.6  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    29   1.6  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    28   2.9  
SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|c...    27   3.8  
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce...    27   5.0  
SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    27   5.0  
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch...    27   6.6  
SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr 3|...    27   6.6  

>SPAC13C5.01c ||SPAC31A2.17c|20S proteasome component alpha
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score =  218 bits (533), Expect = 1e-57
 Identities = 111/224 (49%), Positives = 152/224 (67%), Gaps = 22/224 (9%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRLYQVEYA+EAI+HAG +LGI+A DGI+LAAE++ T+KLL++   +EK+Y + D+M+C+
Sbjct: 16  GRLYQVEYALEAINHAGVALGIVAKDGIVLAAEKKVTSKLLEQEESAEKLYHIGDNMLCA 75

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305
           VAG+T+DAN+L N  R + Q+YL  + E +PC+                   RPFGVS L
Sbjct: 76  VAGLTADANILINYARRVGQQYLQTFNEEMPCEQLVRRVCDLKQGYTQYGGLRPFGVSFL 135

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
           Y GWD   GYQL+QS+PSGNYG W+A  IG NS +  S ++QEYK+ +  L EA A+A+K
Sbjct: 136 YAGWDHIRGYQLFQSNPSGNYGSWQANSIGGNSTSVQSLMRQEYKD-DINLDEASAMAVK 194

Query: 366 VLSKTLDMTKLTPEKVEMATLTR--KDNKTIIRILTNTEVENSL 407
            LSKTLD   LT EK+E AT+T+    NK + +I  + E+   L
Sbjct: 195 FLSKTLDSNSLTHEKIEFATITKDTTKNKMVCKIWKSDEINEVL 238


>SPAC323.02c |||20S proteasome component alpha 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 247

 Score =  111 bits (266), Expect = 2e-25
 Identities = 71/208 (34%), Positives = 114/208 (54%), Gaps = 29/208 (13%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRL+QVEYA+EAI    T++G+   D ++L  E+R T+ L+ E    EK+++++  + C+
Sbjct: 19  GRLFQVEYAIEAIKLGSTAIGVKTKDAVVLGVEKRLTSPLM-ESHSVEKLFEIDSHIGCA 77

Query: 265 VAGITSDANVLTNELRLIAQRYLLQY-------------------------GESIPCKRP 299
           ++G+T+DA  +    R+  Q +   Y                         GE     RP
Sbjct: 78  ISGLTADARTIIEHARVQTQNHRFTYDEPQGIESTTQSICDLALRFGEGEDGEERIMSRP 137

Query: 300 FGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEA 359
           FGV++L  G D+H G QLY S+PSG Y  ++A  IG+ S  A S L +E+   + TL EA
Sbjct: 138 FGVALLIAGIDEH-GPQLYHSEPSGTYFRYEAKAIGSGSEPAKSELVKEF-HKDMTLEEA 195

Query: 360 QALAIKVLSKTLDMTKLTPEKVEMATLT 387
           + L +KVL + ++  KL  + V++A +T
Sbjct: 196 EVLILKVLRQVME-EKLDSKNVQLAKVT 222


>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 245

 Score =  109 bits (262), Expect = 7e-25
 Identities = 76/205 (37%), Positives = 112/205 (54%), Gaps = 24/205 (11%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           G+L Q+EYA+ A++   TS+GI ATDG++LA E++ T++L       EK+  +  D+   
Sbjct: 16  GKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSELAIGASL-EKVCAITPDIGMV 74

Query: 265 VAGITSDANVLTNELRLIAQR-YLLQYGESIPCK-------------------RPFGVSI 304
            +G+  D  VL ++ R +AQ  Y   Y E  P K                   RPFGVS+
Sbjct: 75  YSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSL 134

Query: 305 LYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAI 364
           L  G D+  G  LYQ DPSG Y  WKAT IG +S AA + L++ Y + E  L +A   AI
Sbjct: 135 LVAGMDEK-GPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYND-ELELDDAVHTAI 192

Query: 365 KVLSKTLDMTKLTPEKVEMATLTRK 389
             L +T +  +LT + +E+A ++ K
Sbjct: 193 LALKETFE-GELTEDNIEIAVVSTK 216


>SPBC106.16 |||20S proteasome component alpha 4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 87.4 bits (207), Expect = 3e-18
 Identities = 63/202 (31%), Positives = 105/202 (51%), Gaps = 25/202 (12%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRL QVEY  EA+    T++ +   + I++  ER+N  KL +   F +KI  +++ +  +
Sbjct: 15  GRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKLQNVSNF-QKIAMVDNHVCLA 73

Query: 265 VAGITSDANVLTNELRLIAQR------------YLLQYGESIPCK-------RPFGVSIL 305
            AG+ +DA +L ++ R+ AQ             YL +Y   +  K       RPFGVS L
Sbjct: 74  FAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTL 133

Query: 306 YMGWDKHYGY-QLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAI 364
             G+D      ++YQ++P+G Y  WKAT IG  S AA   L++ +KE    L+  + + +
Sbjct: 134 IAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEG---LSRDETIHL 190

Query: 365 KVLSKTLDMTKLTPEKVEMATL 386
            V S  L++ +     +E+A +
Sbjct: 191 AV-SSLLEVVQTASGNIELAIM 211


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 57/225 (25%), Positives = 109/225 (48%), Gaps = 27/225 (12%)

Query: 205 GRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVC 263
           GRLYQVEYA +A ++AG TS+G+   +   + ++++  +KL+D     + ++ +   + C
Sbjct: 18  GRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLID-ASTVKHVFPITKGIGC 76

Query: 264 SVAGITSDANVLTNELRLIAQRYLLQYGESIPC-------------------KRPFGVSI 304
            + G  +DA    +  R  A  +  + G  +PC                    RP GV++
Sbjct: 77  VMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAM 136

Query: 305 LYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKEN--ETTLAEAQAL 362
             +  D   G  L++ DP+G Y G+KAT  G      ++ L++ +K++   + L +    
Sbjct: 137 TLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVET 196

Query: 363 AIKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
            I+ L  +L  T     ++++  +  +D+K   R+L+  E+E  L
Sbjct: 197 GIQALMSSLS-TDFKSTELQIGVV--EDDKP-FRVLSVEEIEAHL 237


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 71.3 bits (167), Expect = 2e-13
 Identities = 56/211 (26%), Positives = 104/211 (49%), Gaps = 25/211 (11%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRL+QVEYA+EAI     ++G+++    +L A +RN  +L     + +K+ +++D +  +
Sbjct: 17  GRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEELSS---YQKKLIRIDDHIGIA 73

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPC-------------------KRPFGVSIL 305
           +AG+  DA VL+N ++  A      +   IP                    +RP+GV  L
Sbjct: 74  IAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFL 133

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL-AI 364
            +G+D+  G  L +  PSG    +  T +G+ S +A + +++       +  E   L A+
Sbjct: 134 VIGYDES-GPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSAL 192

Query: 365 KVLSKTLDM-TKLTPEKVEMATLTRKDNKTI 394
           + L  TL    +LT E V ++ + + +  T+
Sbjct: 193 RALRDTLSKDQELTEENVSISVIGKDEKYTL 223


>SPCC1795.04c |||20S proteasome component alpha
           7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 253

 Score = 63.3 bits (147), Expect = 6e-11
 Identities = 54/198 (27%), Positives = 86/198 (43%), Gaps = 22/198 (11%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRL+Q EYA +A+ +A T +GI   DG++LA E+  T+KLL +   + +I  ++  +  +
Sbjct: 18  GRLFQAEYAYKAVENASTCIGIKCEDGVILALEKVVTSKLL-KPRVNNRIGSVDRHIGIA 76

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP----------------C---KRPFGVSIL 305
             G   D   +    R  A  +   YG  IP                C    RPFGV   
Sbjct: 77  TTGFIPDGQHIVKRARDEATSWRDNYGSPIPGTVIADRLGNYVQLFTCYSSVRPFGVMSF 136

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
              +D   G  LY  +P+G Y G+     G     A + L ++   +   + +A   A +
Sbjct: 137 VATYDSE-GPHLYMVEPNGVYWGYNGAAAGKGRQVARNEL-EKLNFSSLKMKDAVKEAAR 194

Query: 366 VLSKTLDMTKLTPEKVEM 383
           +L  T D       ++EM
Sbjct: 195 ILYATHDEENNKEHEIEM 212


>SPAC22F8.06 |pam1||20S proteasome component beta
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 37.9 bits (84), Expect = 0.003
 Identities = 34/139 (24%), Positives = 58/139 (41%), Gaps = 17/139 (12%)

Query: 217 ISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDANVLT 276
           + + GT++ I      +LA + R+ N       F  +++++ DD+V   +G  +DA  L 
Sbjct: 10  VQNGGTTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALV 69

Query: 277 NELRLIAQRYLLQY-----GESIPC--------KR--PFGVSILYMGWDKHYGYQLYQSD 321
             ++     Y   +      +S  C        KR  P+ V     G DK    ++Y  D
Sbjct: 70  KRIQQRIDLYHDNHERKMSAQSCACMVRTLLYGKRFFPYYVYTTVAGIDKEGKGEIYSFD 129

Query: 322 PSGNYGGWKATCIGNNSAA 340
           P G+Y   +  C    SAA
Sbjct: 130 PVGSYE--REWCRAGGSAA 146


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 52  WRSICQLFNLLQHMQVAIVVFSLWHFALTSA 82
           W  +C+LF   + M +A+ +F ++H A+ +A
Sbjct: 130 WAPMCELFGRRRPMIIAVFIFCIFHIAVATA 160


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)

Query: 183 LFSSKVRLMVKSGPVKILHLAVGRLYQVEYAMEAI--SHAGTSLGILAT-DGILLAAERR 239
           LF S +  +  S  + IL   +    Q+EY+ME    + A   +GIL   DG+L   E  
Sbjct: 239 LFVSNIDNLGASVDLNILSHVIDN--QIEYSMEITDKTKADIKVGILVNQDGLLRLLETN 296

Query: 240 NTNKLLDEVFFSEKIYK 256
              +   E F S+K++K
Sbjct: 297 QVPEQHREEFMSDKVFK 313


>SPAC23C11.01 |||ER membrane protein, ICE2
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 29  ITRAPAAYDEESGDLYNSSWDSAWRSICQLFNLLQHMQVAIVVFSLWHFA 78
           +  +P+    +      S+W++A      LFNLL+ M   +VV +L H +
Sbjct: 132 LNASPSIEQNKYASFLASAWNTALLHFTPLFNLLEGMASLLVVQALGHLS 181


>SPCC4B3.13 |||MatE family transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 539

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query: 58  LFNLLQHMQVAIVVFSLWHFALTSAPSGAISNL 90
           L +LLQ+ +V   VFSL H   T   + ++SN+
Sbjct: 109 LTSLLQYGEVVTTVFSLGHLGKTELAAASLSNM 141


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 24/91 (26%), Positives = 43/91 (47%), Gaps = 6/91 (6%)

Query: 330 KATCIGNNSAAAVSSLKQEYK--ENETTLAEAQ-ALAIKVLSKTLDMTKLTPEKVEMAT- 385
           K+T I ++S+ + S ++  Y   +NE + ++AQ A+   V +       ++ EK   A  
Sbjct: 588 KSTYIDDSSSNSPSDIESNYSADDNEISKSKAQNAIDFNVTNTHSPSRSISSEKSYKAAE 647

Query: 386 --LTRKDNKTIIRILTNTEVENSLPNSKRPK 414
                K N  ++ +  N E E S P+S   K
Sbjct: 648 RGQQDKHNDVLVDLNPNVEAEKSNPHSNSQK 678


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 30/126 (23%), Positives = 50/126 (39%), Gaps = 10/126 (7%)

Query: 57  QLFNLLQHMQVAIVVFSLWHFALTSAPSGAISNLQLHIIFAGTGYQLFLVEAIMTLHRHN 116
           + FN+  H+   IV F++  +   S+ S   SN+   I+        FL+ A+  L    
Sbjct: 207 ETFNIWTHLSAFIVFFAVLAYFYPSSSSWVSSNVSNRIVRI-----FFLLSAMKCLGCSV 261

Query: 117 SWS--SQLSKDSKRIIHGCLQLIGALFVLAGTFLALAEVNMQINTAHGICGVIALAFTLV 174
            W   S LS         C+  +G   ++A + ++   V        G    I +AFT  
Sbjct: 262 IWHTFSSLSNYKHMRCAACMDYVGISALIAASIIS---VEYHAFVCQGPLRFIFIAFTGT 318

Query: 175 SFISGI 180
             + GI
Sbjct: 319 LGLIGI 324


>SPAC15A10.09c |||SUR7 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 17/81 (20%), Positives = 42/81 (51%), Gaps = 4/81 (4%)

Query: 128 RIIHGCLQLIGALFVLAGTFLALAEVNMQINTA--HG--ICGVIALAFTLVSFISGIIAL 183
           +++ G    + A+++L   F AL  V++ I+     G     V +   T+ +FI+ +IA+
Sbjct: 172 KVLKGACYAMRAMYILGFIFFALTIVSIVISCLPFFGPLFLNVFSFFATIFTFIAAVIAV 231

Query: 184 FSSKVRLMVKSGPVKILHLAV 204
            + ++ +      ++IL++ +
Sbjct: 232 ATYRIAISELEKNIEILNIPI 252


>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 190

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 309 WDKHYGYQLYQSDPSG--NYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKV 366
           +DK YG Q    D     N  G K     +N+    + L +E K  E    EA+ +A KV
Sbjct: 46  YDKLYGEQDLSKDLENTLNVSGTK----DSNAEEQPAKLTKEEKRVERE--EAKRMASKV 99

Query: 367 LSKTLDMTK 375
           L KT++ TK
Sbjct: 100 LIKTIERTK 108


>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 275 LTNELRLIAQRYLLQYGESIPCKRPFGVSILYMGWDKHYGYQLYQSD 321
           LT+   + A ++L QY +       F +S  +  W + +GY LY +D
Sbjct: 161 LTSTTMMAAAKFLSQYIKDE--SNSFVISSDFCHWGRRFGYTLYLND 205


>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 59  FNLLQHMQVAIVVFSLWHFALTSAPS-GAISNLQLH---IIFAGTGYQLFLVEAIMTLHR 114
           FN L+ M+        W FA+ S    G++  + L    ++    GY+ FLV A  T + 
Sbjct: 225 FNALRDMRQYPSFLRSWWFAIKSEGELGSVFLISLICSVLVLCLLGYEFFLVYAGYTTNE 284

Query: 115 HNSWS 119
              WS
Sbjct: 285 SEKWS 289


>SPCC18.08 |||lysine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 531

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)

Query: 227 LATDGILLAAERRNTNKLLDEVFFSE 252
           L + GIL   +R+NT  L+  V++SE
Sbjct: 6   LLSKGILSIIKRKNTGNLIPHVYYSE 31


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,329
Number of Sequences: 5004
Number of extensions: 73637
Number of successful extensions: 243
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 26
length of query: 424
length of database: 2,362,478
effective HSP length: 75
effective length of query: 349
effective length of database: 1,987,178
effective search space: 693525122
effective search space used: 693525122
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)

- SilkBase 1999-2023 -