BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001915-TA|BGIBMGA001915-PA|IPR000243|Peptidase T1A, proteasome beta-subunit, IPR006593|Cytochrome b561 / ferric reductase transmembrane, IPR001353|20S proteasome, A and B subunits (424 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) 81 2e-15 SB_16719| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 2e-09 SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17) 58 1e-08 SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35) 56 7e-08 SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.020 SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45) 36 0.047 SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3 SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35) 31 2.3 SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09) 30 4.1 SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.4 SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 7.1 SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.5 >SB_39285| Best HMM Match : Proteasome (HMM E-Value=0) Length = 215 Score = 81.0 bits (191), Expect = 2e-15 Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 20/153 (13%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 G L+QVEYA EA+ T++G+ + ++L ER+ K L E KI L+D ++ + Sbjct: 16 GHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAK-LQEPRTVRKICTLDDHVLMA 74 Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPC-------------------KRPFGVSIL 305 AG+T+DA +L N+ R+ Q + L + + +RPFG+S L Sbjct: 75 FAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTL 134 Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNS 338 +G+D +LYQ+DPSG Y WK G + Sbjct: 135 IVGFDFDGTPRLYQTDPSGTYHAWKVVQSGGKN 167 >SB_16719| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 42 Score = 60.9 bits (141), Expect = 2e-09 Identities = 29/41 (70%), Positives = 36/41 (87%) Query: 340 AAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEK 380 AAVS LKQEYKE+E +L +A L+IKVLSKTLD+TK+TP+K Sbjct: 1 AAVSLLKQEYKEDEMSLKDALTLSIKVLSKTLDVTKITPDK 41 >SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17) Length = 308 Score = 58.0 bits (134), Expect = 1e-08 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 1/93 (1%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 GR++QVEYA +A+ ++GT++ I DG++ E+ +KL E +++I+ ++ + + Sbjct: 148 GRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLY-EYGANKRIFHIDTHIGMA 206 Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK 297 +AG+ +D+ + R A Y YG IP K Sbjct: 207 IAGLIADSRQIVATAREEAANYRSVYGSPIPLK 239 >SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35) Length = 224 Score = 55.6 bits (128), Expect = 7e-08 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 4/111 (3%) Query: 298 RPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENET-TL 356 RP G ++ +G D+ G QLY++DP+G + G+KA +G A S L+++ K+ T Sbjct: 110 RPLGCGMILIGIDEEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKKKHAWTF 169 Query: 357 AEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407 E AI LS L P ++E+ ++ DN R LT E++ L Sbjct: 170 NETVETAISCLSSVLS-ADFKPSELEVGVVS-MDNPR-FRKLTEAEIDTHL 217 >SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 67 Score = 37.5 bits (83), Expect = 0.020 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Query: 298 RPFGVSILYMGWDKHYGYQLYQSDPSGNYGG 328 RPFGVS+L GWD Y L+Q DPS ++ G Sbjct: 4 RPFGVSLLVAGWDDDRPY-LFQCDPSESFEG 33 >SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45) Length = 291 Score = 36.3 bits (80), Expect = 0.047 Identities = 21/78 (26%), Positives = 34/78 (43%) Query: 219 HAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDANVLTNE 278 + GT L I D ++A++ R + S K+YKL V +G D LT Sbjct: 86 NGGTVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLTKH 145 Query: 279 LRLIAQRYLLQYGESIPC 296 + Q Y +G+++ C Sbjct: 146 ISARLQMYEHDHGKAMSC 163 >SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1067 Score = 31.5 bits (68), Expect = 1.3 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 330 KATCIGNNSAAAVSSLKQEYKENETT--LAEAQALAIKVLSKTLDMTKLTPEKVEMATLT 387 +++ I S + SL+ N TT LAEA A++ VL T + + E MAT + Sbjct: 840 ESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSSMESSSMATTS 899 Query: 388 RKDNKTIIRILTNTEVENSL 407 ++ +T ++L Sbjct: 900 TSSTPSLESSMTTNSTTSTL 919 Score = 29.5 bits (63), Expect = 5.4 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 3/91 (3%) Query: 334 IGNNSAAAVSSLKQEYKENETT--LAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDN 391 + S + SL+ N TT LAEA A++ VL T + + E MAT + Sbjct: 538 MATTSTTSTPSLESSMTTNNTTSTLAEAVAISSLVLPTTTSVLTSSMESSSMATTSTTST 597 Query: 392 KTIIRILTNTEVENSLPNSKRPKLKLKLPET 422 ++ +T T S P L LP T Sbjct: 598 PSLESSMT-TNSTTSTPAEAVAISSLVLPST 627 Score = 29.1 bits (62), Expect = 7.1 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%) Query: 330 KATCIGNNSAAAVSSLKQEYKENETT--LAEAQALAIKVLSKTLDMTKLTPEKVEMATLT 387 +++ + S + SL+ N TT LAEA A++ VL T + + E MAT + Sbjct: 636 ESSSMATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSSMESSSMATTS 695 Query: 388 RKDNKTIIRILTNTEVENSL 407 ++ +T ++L Sbjct: 696 TTSAPSLESSMTTNSTTSTL 715 >SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35) Length = 430 Score = 30.7 bits (66), Expect = 2.3 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 348 EYKENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407 E +E E +A + + + D+T+ P + + L ++D KT+ LT E L Sbjct: 128 EKEEEEEAIALQKRINMAFDDDDFDITESAPVEDDAVEL-QEDEKTVALDLTKLTKEQKL 186 Query: 408 PNSKRPKLKLKLPETAC 424 +K +LK KL T C Sbjct: 187 EGAKYIELKHKLYLTYC 203 >SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09) Length = 490 Score = 29.9 bits (64), Expect = 4.1 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%) Query: 332 TCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDN 391 T + + A +++++Q TT+ ++ A+ I + +++ MT T E+ T+T + Sbjct: 81 TTVEQSIAMTITTVEQSIAMTITTVEQSIAMTITTVEQSIAMTTTTVEQSIAMTITTVEQ 140 Query: 392 KTIIRILTNTEVENSL 407 +T T VE S+ Sbjct: 141 SI---AMTTTTVEQSI 153 >SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1177 Score = 29.5 bits (63), Expect = 5.4 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%) Query: 24 PYQAEITRAPAAYDEESGDLYNSSWDSAWRSICQLFNLLQHMQVAIVVF 72 P Q EI Y E+S +++ SS S+ FNL +H+Q +V+F Sbjct: 297 PPQLEIEEEEFLYPEDSPEMFPSSGHGD--SLMGSFNLQEHLQENVVLF 343 >SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 2286 Score = 29.1 bits (62), Expect = 7.1 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%) Query: 2 DRPSTSQQSVEKVEMFEVREHVPYQAEITRAPAAYDEESGDLYNSSWDSAWRSICQLFNL 61 + PS S EK + + H P R P Y+ E+G Y +++ S+ + NL Sbjct: 1707 EEPSVSPPQQEKAAAPQPQLHSPRPCRARRPPKRYEPETGQWYEPHFETRQASLVK--NL 1764 Query: 62 LQHMQVAIVVFS 73 Q + F+ Sbjct: 1765 QQGYHDGVFQFA 1776 >SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 457 Score = 28.7 bits (61), Expect = 9.5 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%) Query: 166 VIALAFTLVSFISGIIALF-----SSKVRLMVKSGPVKILHLAVGRL 207 +I L F + F+ G+I F +SK R +G + ILHLA+ L Sbjct: 46 IIRLLFQTLLFLGGVIGNFLVCLVTSKKRRQTSTGNLLILHLAISDL 92 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.319 0.132 0.384 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,249,718 Number of Sequences: 59808 Number of extensions: 511849 Number of successful extensions: 4562 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 4541 Number of HSP's gapped (non-prelim): 26 length of query: 424 length of database: 16,821,457 effective HSP length: 84 effective length of query: 340 effective length of database: 11,797,585 effective search space: 4011178900 effective search space used: 4011178900 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 61 (28.7 bits)
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