GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001915-TA|BGIBMGA001915-PA|IPR000243|Peptidase T1A,
proteasome beta-subunit, IPR006593|Cytochrome b561 / ferric reductase
transmembrane, IPR001353|20S proteasome, A and B subunits
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)                  81   2e-15
SB_16719| Best HMM Match : No HMM Matches (HMM E-Value=.)              61   2e-09
SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)            58   1e-08
SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)            56   7e-08
SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.020
SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)         36   0.047
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35)            31   2.3  
SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09)           30   4.1  
SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.1  
SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.5  

>SB_39285| Best HMM Match : Proteasome (HMM E-Value=0)
          Length = 215

 Score = 81.0 bits (191), Expect = 2e-15
 Identities = 50/153 (32%), Positives = 78/153 (50%), Gaps = 20/153 (13%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           G L+QVEYA EA+    T++G+   + ++L  ER+   K L E     KI  L+D ++ +
Sbjct: 16  GHLFQVEYAQEAVKKGSTAVGVRGNNIVVLGVERKAVAK-LQEPRTVRKICTLDDHVLMA 74

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPC-------------------KRPFGVSIL 305
            AG+T+DA +L N+ R+  Q + L   + +                     +RPFG+S L
Sbjct: 75  FAGLTADARILVNKARVECQSHKLTVEDPVTLEYITRFIATLKQRYTQSNGRRPFGISTL 134

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNS 338
            +G+D     +LYQ+DPSG Y  WK    G  +
Sbjct: 135 IVGFDFDGTPRLYQTDPSGTYHAWKVVQSGGKN 167


>SB_16719| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 42

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 29/41 (70%), Positives = 36/41 (87%)

Query: 340 AAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEK 380
           AAVS LKQEYKE+E +L +A  L+IKVLSKTLD+TK+TP+K
Sbjct: 1   AAVSLLKQEYKEDEMSLKDALTLSIKVLSKTLDVTKITPDK 41


>SB_47434| Best HMM Match : Proteasome (HMM E-Value=4.3e-17)
          Length = 308

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GR++QVEYA +A+ ++GT++ I   DG++   E+   +KL  E   +++I+ ++  +  +
Sbjct: 148 GRVFQVEYANKAVENSGTAIAIRCKDGVVFGVEKLVLSKLY-EYGANKRIFHIDTHIGMA 206

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK 297
           +AG+ +D+  +    R  A  Y   YG  IP K
Sbjct: 207 IAGLIADSRQIVATAREEAANYRSVYGSPIPLK 239


>SB_31216| Best HMM Match : Proteasome (HMM E-Value=2.8e-35)
          Length = 224

 Score = 55.6 bits (128), Expect = 7e-08
 Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 4/111 (3%)

Query: 298 RPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENET-TL 356
           RP G  ++ +G D+  G QLY++DP+G + G+KA  +G     A S L+++ K+    T 
Sbjct: 110 RPLGCGMILIGIDEEKGPQLYKTDPAGYFCGFKACSVGVKQTEANSFLEKKVKKKHAWTF 169

Query: 357 AEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
            E    AI  LS  L      P ++E+  ++  DN    R LT  E++  L
Sbjct: 170 NETVETAISCLSSVLS-ADFKPSELEVGVVS-MDNPR-FRKLTEAEIDTHL 217


>SB_40084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 67

 Score = 37.5 bits (83), Expect = 0.020
 Identities = 17/31 (54%), Positives = 21/31 (67%), Gaps = 1/31 (3%)

Query: 298 RPFGVSILYMGWDKHYGYQLYQSDPSGNYGG 328
           RPFGVS+L  GWD    Y L+Q DPS ++ G
Sbjct: 4   RPFGVSLLVAGWDDDRPY-LFQCDPSESFEG 33


>SB_24524| Best HMM Match : Proteasome (HMM E-Value=1.4013e-45)
          Length = 291

 Score = 36.3 bits (80), Expect = 0.047
 Identities = 21/78 (26%), Positives = 34/78 (43%)

Query: 219 HAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDANVLTNE 278
           + GT L I   D  ++A++ R +         S K+YKL    V   +G   D   LT  
Sbjct: 86  NGGTVLAISGEDFAVIASDTRLSQGFQIHTRDSPKVYKLTGSTVLGCSGFHGDCLTLTKH 145

Query: 279 LRLIAQRYLLQYGESIPC 296
           +    Q Y   +G+++ C
Sbjct: 146 ISARLQMYEHDHGKAMSC 163


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 31.5 bits (68), Expect = 1.3
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 330 KATCIGNNSAAAVSSLKQEYKENETT--LAEAQALAIKVLSKTLDMTKLTPEKVEMATLT 387
           +++ I   S  +  SL+     N TT  LAEA A++  VL  T  +   + E   MAT +
Sbjct: 840 ESSSIATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSSMESSSMATTS 899

Query: 388 RKDNKTIIRILTNTEVENSL 407
                ++   +T     ++L
Sbjct: 900 TSSTPSLESSMTTNSTTSTL 919



 Score = 29.5 bits (63), Expect = 5.4
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 3/91 (3%)

Query: 334 IGNNSAAAVSSLKQEYKENETT--LAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDN 391
           +   S  +  SL+     N TT  LAEA A++  VL  T  +   + E   MAT +    
Sbjct: 538 MATTSTTSTPSLESSMTTNNTTSTLAEAVAISSLVLPTTTSVLTSSMESSSMATTSTTST 597

Query: 392 KTIIRILTNTEVENSLPNSKRPKLKLKLPET 422
            ++   +T T    S P        L LP T
Sbjct: 598 PSLESSMT-TNSTTSTPAEAVAISSLVLPST 627



 Score = 29.1 bits (62), Expect = 7.1
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 330 KATCIGNNSAAAVSSLKQEYKENETT--LAEAQALAIKVLSKTLDMTKLTPEKVEMATLT 387
           +++ +   S  +  SL+     N TT  LAEA A++  VL  T  +   + E   MAT +
Sbjct: 636 ESSSMATTSTTSTPSLESSMTTNSTTSTLAEAVAISSPVLPTTTSVLTSSMESSSMATTS 695

Query: 388 RKDNKTIIRILTNTEVENSL 407
                ++   +T     ++L
Sbjct: 696 TTSAPSLESSMTTNSTTSTL 715


>SB_10018| Best HMM Match : Sas10_Utp3 (HMM E-Value=7.6e-35)
          Length = 430

 Score = 30.7 bits (66), Expect = 2.3
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 348 EYKENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
           E +E E  +A  + + +       D+T+  P + +   L ++D KT+   LT    E  L
Sbjct: 128 EKEEEEEAIALQKRINMAFDDDDFDITESAPVEDDAVEL-QEDEKTVALDLTKLTKEQKL 186

Query: 408 PNSKRPKLKLKLPETAC 424
             +K  +LK KL  T C
Sbjct: 187 EGAKYIELKHKLYLTYC 203


>SB_43724| Best HMM Match : AMP-binding (HMM E-Value=2.6e-09)
          Length = 490

 Score = 29.9 bits (64), Expect = 4.1
 Identities = 18/76 (23%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 332 TCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDN 391
           T +  + A  +++++Q      TT+ ++ A+ I  + +++ MT  T E+    T+T  + 
Sbjct: 81  TTVEQSIAMTITTVEQSIAMTITTVEQSIAMTITTVEQSIAMTTTTVEQSIAMTITTVEQ 140

Query: 392 KTIIRILTNTEVENSL 407
                 +T T VE S+
Sbjct: 141 SI---AMTTTTVEQSI 153


>SB_49640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1177

 Score = 29.5 bits (63), Expect = 5.4
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 24  PYQAEITRAPAAYDEESGDLYNSSWDSAWRSICQLFNLLQHMQVAIVVF 72
           P Q EI      Y E+S +++ SS      S+   FNL +H+Q  +V+F
Sbjct: 297 PPQLEIEEEEFLYPEDSPEMFPSSGHGD--SLMGSFNLQEHLQENVVLF 343


>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2286

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 2    DRPSTSQQSVEKVEMFEVREHVPYQAEITRAPAAYDEESGDLYNSSWDSAWRSICQLFNL 61
            + PS S    EK    + + H P      R P  Y+ E+G  Y   +++   S+ +  NL
Sbjct: 1707 EEPSVSPPQQEKAAAPQPQLHSPRPCRARRPPKRYEPETGQWYEPHFETRQASLVK--NL 1764

Query: 62   LQHMQVAIVVFS 73
             Q     +  F+
Sbjct: 1765 QQGYHDGVFQFA 1776


>SB_30435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 28.7 bits (61), Expect = 9.5
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)

Query: 166 VIALAFTLVSFISGIIALF-----SSKVRLMVKSGPVKILHLAVGRL 207
           +I L F  + F+ G+I  F     +SK R    +G + ILHLA+  L
Sbjct: 46  IIRLLFQTLLFLGGVIGNFLVCLVTSKKRRQTSTGNLLILHLAISDL 92


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,249,718
Number of Sequences: 59808
Number of extensions: 511849
Number of successful extensions: 4562
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4541
Number of HSP's gapped (non-prelim): 26
length of query: 424
length of database: 16,821,457
effective HSP length: 84
effective length of query: 340
effective length of database: 11,797,585
effective search space: 4011178900
effective search space used: 4011178900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)