Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001915-TA|BGIBMGA001915-PA|IPR000243|Peptidase T1A,
proteasome beta-subunit, IPR006593|Cytochrome b561 / ferric reductase
transmembrane, IPR001353|20S proteasome, A and B subunits
(424 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 260 2e-69
Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 99 5e-21
Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 97 2e-20
Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 93 3e-19
Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 79 8e-15
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 79 8e-15
AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 71 1e-12
AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 38 0.018
U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 32 0.89
AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 31 2.0
U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 30 2.7
U23180-3|AAC46729.2| 856|Caenorhabditis elegans Hypothetical pr... 30 2.7
AF068713-6|AAC17797.1| 282|Caenorhabditis elegans Serpentine re... 30 2.7
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z70755-1|CAA94781.2| 292|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 6.3
Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical pr... 29 8.3
AF022983-6|AAK82915.1| 79|Caenorhabditis elegans Hypothetical ... 29 8.3
>AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha
subunit protein 3 protein.
Length = 250
Score = 260 bits (636), Expect = 2e-69
Identities = 136/236 (57%), Positives = 170/236 (72%), Gaps = 22/236 (9%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
GRLYQVEYAMEAISHAGT LGIL+++GI++AAER+N +KLLD+ +EK+Y+L+D++ C+
Sbjct: 16 GRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCT 75
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP--------C-----------KRPFGVSIL 305
VAGIT+DAN+L N LR A Y YGE +P C KRPFGVS+L
Sbjct: 76 VAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLL 135
Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
Y+GWDKHYGYQLYQSDPSGNY GWKATCIG+N AAV+ LKQEYK L EA+ LAIK
Sbjct: 136 YIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYK--SPNLEEAKQLAIK 193
Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSLPNSKRPKLKLKLPE 421
VL KTLD+ KL EKVEMA LTR+D KT++ LT EV+ + ++ + + + E
Sbjct: 194 VLWKTLDV-KLASEKVEMAVLTRRDGKTVLEELTTKEVDALIAEHEKKEKEAETAE 248
>Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical
protein F25H2.9 protein.
Length = 248
Score = 99.1 bits (236), Expect = 5e-21
Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 27/205 (13%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
GRL+QVEYA+EA+ TS+GI ++G+LLAAE+R+T+KL+ EKI K++ + +
Sbjct: 19 GRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAI-EKISKVDQHIGVT 77
Query: 265 VAGITSDANVLTNELRLIAQRY--------------------LLQYGE---SIPCKRPFG 301
AG+ +D+ L ++ AQ + LQ+G+ RPFG
Sbjct: 78 FAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFG 137
Query: 302 VSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQA 361
V++L+ G D+ G +L+ DPSG + KA IG S A +LK++Y + T+ E
Sbjct: 138 VAMLFAGVDQE-GAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQY-HDALTIKEGLK 195
Query: 362 LAIKVLSKTLDMTKLTPEKVEMATL 386
+A+ +L + ++ KL VE+ +
Sbjct: 196 MALAILKQVME-EKLNSANVEVVVI 219
>Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical
protein D1054.2 protein.
Length = 231
Score = 97.5 bits (232), Expect = 2e-20
Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 30/223 (13%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
G+L Q+EYA+ A+ + S+G+ A DG++LA E N +L + K+ +++ + C
Sbjct: 16 GKLMQIEYALNAVKNGQPSVGLRAKDGVVLATE--NVGSVLTDD--QPKVEQISKHIGCV 71
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPC-------------------KRPFGVSIL 305
+G+ D +L + R IA Y + YGE +P RPFG S+L
Sbjct: 72 YSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLL 131
Query: 306 YMGWDKHYGYQL-YQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAI 364
GWDK+ G L +Q DPSG Y WKAT +G N A + L++ + E L + A+
Sbjct: 132 IAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSE-ALELDDGIHTAL 190
Query: 365 KVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
L ++ D+ + VE+A N T LT +V + L
Sbjct: 191 LTLRESFDV-GMNENNVEVAVC----NSTGFHRLTKQQVHDHL 228
>Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical
protein C36B1.4 protein.
Length = 253
Score = 93.5 bits (222), Expect = 3e-19
Identities = 63/238 (26%), Positives = 119/238 (50%), Gaps = 22/238 (9%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
G L+QVEYA EA+ T++G+ D I++ E+++ L D+ KI+ ++D ++ +
Sbjct: 15 GHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTI-RKIHMIDDHVMLA 73
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESI-------------------PCKRPFGVSIL 305
AG+++DA VL + R+ Q Y L + + P +RPFG+S+L
Sbjct: 74 FAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISML 133
Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
G+D +L++++PSG Y + A G L+++Y E E T+ EA L +
Sbjct: 134 IGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSE-ENTVDEATTLKL- 191
Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSLPNSKRPKLKLKLPETA 423
V+ + + +E+A + + +++ R+L+ E+E L + ++ + E A
Sbjct: 192 VVKSLAQVVPPGSQNIEIAVMKKVNDELQQRVLSTEEIEALLKVVETERVAAEAEEAA 249
>Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical
protein C15H11.7 protein.
Length = 246
Score = 78.6 bits (185), Expect = 8e-15
Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 25/224 (11%)
Query: 205 GRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVC 263
GR+YQVEYA +AI+ T++ + D ++A ++R + L+ + +Y+++ + C
Sbjct: 20 GRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTS-VYQISQSVGC 78
Query: 264 SVAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSI 304
G+ DA + A + + G +PC+ R G ++
Sbjct: 79 CAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCAL 138
Query: 305 LYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEY-KENETTLAEAQALA 363
L++ +D G ++Y+ DP+G Y G K +G A S L+++ K++E T EA LA
Sbjct: 139 LFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELA 198
Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
I+ L +L + + + +E+ +T KDN + LT+ +VE+ L
Sbjct: 199 IEALQTSLGI-DVRSKDLEVVVVT-KDNSKFTK-LTSDQVEHHL 239
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 78.6 bits (185), Expect = 8e-15
Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 20/205 (9%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
GR++QVEYA +A+ +AGT + I +G+++ A++ ++KL + + +++ +ND++ +
Sbjct: 19 GRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTD-NANPRMFNVNDNVGVA 77
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK------------------RPFGVSILY 306
VAG D L N A ++L Y E +P + RPFG +
Sbjct: 78 VAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTLGISRPFGAGAFF 137
Query: 307 MGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKV 366
M W+K G +L+ +PSG +KA +G + AA + + ++ K E + + A ++
Sbjct: 138 MSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEI-EKLKIEELDVNQLVKEAARI 196
Query: 367 LSKTLDMTKLTPEKVEMATLTRKDN 391
+ D K ++EM + + N
Sbjct: 197 IMVVRDENKDKNVQIEMGWVGEQTN 221
>AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha
subunit protein 6 protein.
Length = 260
Score = 71.3 bits (167), Expect = 1e-12
Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 24/187 (12%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
GRL+QVEYA+EA+ ++GI + ++ A +R N L +K+Y+++ S
Sbjct: 17 GRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSH---QKKVYEIDTHAGVS 73
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305
+AG+ SD +L L+ + Y +++P K RPFGV IL
Sbjct: 74 IAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGIL 133
Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL-AI 364
G+DK G + Q+DPS T IG S +A + L++ E + E + A+
Sbjct: 134 IAGYDKD-GAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHAL 192
Query: 365 KVLSKTL 371
L TL
Sbjct: 193 LALRDTL 199
>AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta
subunit protein 1 protein.
Length = 239
Score = 37.5 bits (83), Expect = 0.018
Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 15/165 (9%)
Query: 212 YAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSD 271
Y E IS T + + G+++ + R + + KI + D+MV +G +D
Sbjct: 15 YPQEEISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAAD 74
Query: 272 ANVLTNELRLIAQRYLLQYGESIPCKRP--------------FGVSILYMGWDKHYGYQL 317
+ + + Y + + + R S+L GWD+ G Q+
Sbjct: 75 TQAIADIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQV 134
Query: 318 YQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL 362
Y G ++T G+ S L +++ N TL E +A+
Sbjct: 135 YAIPIGGFVSRQRSTASGSGSTFVQGFLDSQWRPN-LTLEECKAI 178
>U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate
filament, d protein 2 protein.
Length = 443
Score = 31.9 bits (69), Expect = 0.89
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 343 SSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTE 402
+SL +EN+ ++ A+ K+ + K ++ TR+D ++ ++IL+N E
Sbjct: 110 ASLFTLVRENKAKISTAEQNIRKLEPDVISAKKNLESSFQLRVQTREDKRSQMKILSNLE 169
Query: 403 VENS 406
ENS
Sbjct: 170 AENS 173
>AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate
receptor family (ampa)protein 6, isoform a protein.
Length = 844
Score = 30.7 bits (66), Expect = 2.0
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 92 LHIIFAGTGYQLFLVEAIMTLHRHNSWSSQLSKDSKRIIHGCLQLIGALFVLAGTFLALA 151
L + F GTG + I + H +S + ++ RI ++ GA F+ +F+AL
Sbjct: 8 LLLSFLGTGVSSIRIGLITSHHLEHSVRTAVNIIVPRINEQIVKTRGACFITHTSFIALK 67
Query: 152 EVNMQINTAHGICGVIALAFTLVSFISGII 181
+ +NT IC LA + VS I G++
Sbjct: 68 NSHEDLNTK--ICD---LANSEVSVIIGVV 92
>U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta
subunit protein 3 protein.
Length = 204
Score = 30.3 bits (65), Expect = 2.7
Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 214 MEAISHAGTSLGILATDG-ILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDA 272
M +S+ G ++ +A D + +A++ R ++ +K++K+ D + +AG SDA
Sbjct: 1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60
Query: 273 NVLTNELRLIAQRYLLQYGESI 294
+ ++ Y L+ +I
Sbjct: 61 RTVLEKIMFRKNLYELRENRNI 82
>U23180-3|AAC46729.2| 856|Caenorhabditis elegans Hypothetical
protein C28F5.4 protein.
Length = 856
Score = 30.3 bits (65), Expect = 2.7
Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 145 GTFLALAEVNMQINTAHGICGV-IALAFTLVSFISGIIALFSSKVRLMVKSGPVKILHLA 203
G ++L N I + G+ V + L+ + + +I L + + + SGP K +H
Sbjct: 318 GWVISLEADNHTIASGFGVFSVTMDLSTEGLEHVDDVIQLVFNFIGFLKSSGPQKWIHDE 377
Query: 204 VGRLYQVEYAMEAISHAGTSLGILA 228
+ L V++ + + H ILA
Sbjct: 378 LAELNAVDFRFDDVKHTMEKASILA 402
>AF068713-6|AAC17797.1| 282|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 67 protein.
Length = 282
Score = 30.3 bits (65), Expect = 2.7
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 103 LFLVEAIMTLHRHNSWSSQLSKDSKRIIHGCLQLIGALFVLAG----TFLALAEVNMQIN 158
LF + + + + S S+ + I + C ++ L+VLAG TF+ L + +
Sbjct: 27 LFTIFCLKGITSKSDMSLVYSRFAADIGYSCSIIVFKLYVLAGMISKTFI-LKNIIFFVI 85
Query: 159 TAHGICGVIALAFTLVSFISGIIALFSSK 187
A I G+I + + + IIALFSS+
Sbjct: 86 RATVILGIIRTSLLFIISLDRIIALFSSQ 114
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 29.1 bits (62), Expect = 6.3
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 308 GWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQ----EYKENETTLAEAQALA 363
GW ++ LY D + N W I NS V++LK + ++
Sbjct: 1520 GWFTNF--VLYPFDSTSNKDSWYPPTISRNSDDIVTALKNISTMSCPGSAPCSSQCPRPI 1577
Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRI 397
+ VLS LDM L + +TR + +++
Sbjct: 1578 VSVLSSILDMNALAAPNSVIVVITRSSPEDYLQV 1611
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 29.1 bits (62), Expect = 6.3
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 308 GWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQ----EYKENETTLAEAQALA 363
GW ++ LY D + N W I NS V++LK + ++
Sbjct: 1520 GWFTNF--VLYPFDSTSNKDSWYPPTISRNSDDIVTALKNISTMSCPGSAPCSSQCPRPI 1577
Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRI 397
+ VLS LDM L + +TR + +++
Sbjct: 1578 VSVLSSILDMNALAAPNSVIVVITRSSPEDYLQV 1611
>Z70755-1|CAA94781.2| 292|Caenorhabditis elegans Hypothetical
protein K06A4.1 protein.
Length = 292
Score = 29.1 bits (62), Expect = 6.3
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 5/87 (5%)
Query: 308 GWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEY-----KENETTLAEAQAL 362
G HY +++YQ S GG+ A I + + +V K++Y N TL +
Sbjct: 192 GSASHYNFKIYQRAKSYYMGGYDANSIMHYNFGSVPWQKRDYFSPSDIRNINTLYKCNNR 251
Query: 363 AIKVLSKTLDMTKLTPEKVEMATLTRK 389
+ T+ T T K L K
Sbjct: 252 VVSKFPSTIPSTSTTTTKAPQFELFEK 278
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
T25C12.3 protein.
Length = 2103
Score = 29.1 bits (62), Expect = 6.3
Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)
Query: 308 GWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQ----EYKENETTLAEAQALA 363
GW ++ LY D + N W I NS V++LK + ++
Sbjct: 1520 GWFTNF--VLYPFDSTSNKDSWYPPTISRNSDDIVTALKNISTMSCPGSAPCSSQCPRPI 1577
Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRI 397
+ VLS LDM L + +TR + +++
Sbjct: 1578 VSVLSSILDMNALAAPNSVIVVITRSSPEDYLQV 1611
>Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical
protein C14A4.3 protein.
Length = 603
Score = 28.7 bits (61), Expect = 8.3
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 9/104 (8%)
Query: 92 LHIIFAGTGYQ------LFLVEAIMTLHRHN---SWSSQLSKDSKRIIHGCLQLIGALFV 142
LH+ G G+Q ++ + + ++ H S + L D+K ++ ++L LF
Sbjct: 86 LHLFLYGEGFQTWEYSPVYAIRSYFYIYLHYIPASLFANLFGDTKIVVFTLIRLTIGLFC 145
Query: 143 LAGTFLALAEVNMQINTAHGICGVIALAFTLVSFISGIIALFSS 186
L G + A + +IN A G ++ F+ F++ + SS
Sbjct: 146 LLGEYYAFDAICKKINIATGRFFILFSIFSSGMFLASTAFVPSS 189
>AF022983-6|AAK82915.1| 79|Caenorhabditis elegans Hypothetical
protein R13D11.10 protein.
Length = 79
Score = 28.7 bits (61), Expect = 8.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 308 GWDKHYGYQLYQSDPSGNYGGWKATCIG 335
GW GY Y P G YGGW +G
Sbjct: 38 GWGGRGGYGGYGYRPYGGYGGWGGRGMG 65
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,766,874
Number of Sequences: 27539
Number of extensions: 384170
Number of successful extensions: 1073
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 25
length of query: 424
length of database: 12,573,161
effective HSP length: 83
effective length of query: 341
effective length of database: 10,287,424
effective search space: 3508011584
effective search space used: 3508011584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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