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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001915-TA|BGIBMGA001915-PA|IPR000243|Peptidase T1A,
proteasome beta-subunit, IPR006593|Cytochrome b561 / ferric reductase
transmembrane, IPR001353|20S proteasome, A and B subunits
         (424 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome al...   260   2e-69
Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical pr...    99   5e-21
Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical pr...    97   2e-20
Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical pr...    93   3e-19
Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical pr...    79   8e-15
Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical pr...    79   8e-15
AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome al...    71   1e-12
AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome be...    38   0.018
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    32   0.89 
AC006637-5|AAM54176.2|  844|Caenorhabditis elegans Glutamate rec...    31   2.0  
U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta...    30   2.7  
U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical pr...    30   2.7  
AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine re...    30   2.7  
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z70755-1|CAA94781.2|  292|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr...    29   6.3  
Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical pr...    29   8.3  
AF022983-6|AAK82915.1|   79|Caenorhabditis elegans Hypothetical ...    29   8.3  

>AC006708-4|AAF60416.2|  250|Caenorhabditis elegans Proteasome alpha
           subunit protein 3 protein.
          Length = 250

 Score =  260 bits (636), Expect = 2e-69
 Identities = 136/236 (57%), Positives = 170/236 (72%), Gaps = 22/236 (9%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRLYQVEYAMEAISHAGT LGIL+++GI++AAER+N +KLLD+   +EK+Y+L+D++ C+
Sbjct: 16  GRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCT 75

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP--------C-----------KRPFGVSIL 305
           VAGIT+DAN+L N LR  A  Y   YGE +P        C           KRPFGVS+L
Sbjct: 76  VAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLL 135

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
           Y+GWDKHYGYQLYQSDPSGNY GWKATCIG+N  AAV+ LKQEYK     L EA+ LAIK
Sbjct: 136 YIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYK--SPNLEEAKQLAIK 193

Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSLPNSKRPKLKLKLPE 421
           VL KTLD+ KL  EKVEMA LTR+D KT++  LT  EV+  +   ++ + + +  E
Sbjct: 194 VLWKTLDV-KLASEKVEMAVLTRRDGKTVLEELTTKEVDALIAEHEKKEKEAETAE 248


>Z79754-8|CAB02097.1|  248|Caenorhabditis elegans Hypothetical
           protein F25H2.9 protein.
          Length = 248

 Score = 99.1 bits (236), Expect = 5e-21
 Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 27/205 (13%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRL+QVEYA+EA+    TS+GI  ++G+LLAAE+R+T+KL+      EKI K++  +  +
Sbjct: 19  GRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAI-EKISKVDQHIGVT 77

Query: 265 VAGITSDANVLTNELRLIAQRY--------------------LLQYGE---SIPCKRPFG 301
            AG+ +D+  L    ++ AQ +                     LQ+G+        RPFG
Sbjct: 78  FAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFG 137

Query: 302 VSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQA 361
           V++L+ G D+  G +L+  DPSG +   KA  IG  S  A  +LK++Y  +  T+ E   
Sbjct: 138 VAMLFAGVDQE-GAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQY-HDALTIKEGLK 195

Query: 362 LAIKVLSKTLDMTKLTPEKVEMATL 386
           +A+ +L + ++  KL    VE+  +
Sbjct: 196 MALAILKQVME-EKLNSANVEVVVI 219


>Z74030-2|CAA98441.1|  231|Caenorhabditis elegans Hypothetical
           protein D1054.2 protein.
          Length = 231

 Score = 97.5 bits (232), Expect = 2e-20
 Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 30/223 (13%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           G+L Q+EYA+ A+ +   S+G+ A DG++LA E  N   +L +     K+ +++  + C 
Sbjct: 16  GKLMQIEYALNAVKNGQPSVGLRAKDGVVLATE--NVGSVLTDD--QPKVEQISKHIGCV 71

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPC-------------------KRPFGVSIL 305
            +G+  D  +L  + R IA  Y + YGE +P                     RPFG S+L
Sbjct: 72  YSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLL 131

Query: 306 YMGWDKHYGYQL-YQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAI 364
             GWDK+ G  L +Q DPSG Y  WKAT +G N   A + L++ + E    L +    A+
Sbjct: 132 IAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSE-ALELDDGIHTAL 190

Query: 365 KVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
             L ++ D+  +    VE+A      N T    LT  +V + L
Sbjct: 191 LTLRESFDV-GMNENNVEVAVC----NSTGFHRLTKQQVHDHL 228


>Z80215-2|CAB02269.1|  253|Caenorhabditis elegans Hypothetical
           protein C36B1.4 protein.
          Length = 253

 Score = 93.5 bits (222), Expect = 3e-19
 Identities = 63/238 (26%), Positives = 119/238 (50%), Gaps = 22/238 (9%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           G L+QVEYA EA+    T++G+   D I++  E+++   L D+     KI+ ++D ++ +
Sbjct: 15  GHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTI-RKIHMIDDHVMLA 73

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESI-------------------PCKRPFGVSIL 305
            AG+++DA VL +  R+  Q Y L   + +                   P +RPFG+S+L
Sbjct: 74  FAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISML 133

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
             G+D     +L++++PSG Y  + A   G         L+++Y E E T+ EA  L + 
Sbjct: 134 IGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSE-ENTVDEATTLKL- 191

Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSLPNSKRPKLKLKLPETA 423
           V+     +     + +E+A + + +++   R+L+  E+E  L   +  ++  +  E A
Sbjct: 192 VVKSLAQVVPPGSQNIEIAVMKKVNDELQQRVLSTEEIEALLKVVETERVAAEAEEAA 249


>Z81035-5|CAB02738.1|  246|Caenorhabditis elegans Hypothetical
           protein C15H11.7 protein.
          Length = 246

 Score = 78.6 bits (185), Expect = 8e-15
 Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 25/224 (11%)

Query: 205 GRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVC 263
           GR+YQVEYA +AI+    T++ +   D  ++A ++R  + L+     +  +Y+++  + C
Sbjct: 20  GRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTS-VYQISQSVGC 78

Query: 264 SVAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSI 304
              G+  DA       +  A  +  + G  +PC+                   R  G ++
Sbjct: 79  CAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCAL 138

Query: 305 LYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEY-KENETTLAEAQALA 363
           L++ +D   G ++Y+ DP+G Y G K   +G     A S L+++  K++E T  EA  LA
Sbjct: 139 LFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELA 198

Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
           I+ L  +L +  +  + +E+  +T KDN    + LT+ +VE+ L
Sbjct: 199 IEALQTSLGI-DVRSKDLEVVVVT-KDNSKFTK-LTSDQVEHHL 239


>Z48544-9|CAA88436.2|  250|Caenorhabditis elegans Hypothetical
           protein ZK945.2 protein.
          Length = 250

 Score = 78.6 bits (185), Expect = 8e-15
 Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 20/205 (9%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GR++QVEYA +A+ +AGT + I   +G+++ A++  ++KL  +   + +++ +ND++  +
Sbjct: 19  GRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTD-NANPRMFNVNDNVGVA 77

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK------------------RPFGVSILY 306
           VAG   D   L N     A ++L  Y E +P +                  RPFG    +
Sbjct: 78  VAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTLGISRPFGAGAFF 137

Query: 307 MGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKV 366
           M W+K  G +L+  +PSG    +KA  +G +  AA + + ++ K  E  + +    A ++
Sbjct: 138 MSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEI-EKLKIEELDVNQLVKEAARI 196

Query: 367 LSKTLDMTKLTPEKVEMATLTRKDN 391
           +    D  K    ++EM  +  + N
Sbjct: 197 IMVVRDENKDKNVQIEMGWVGEQTN 221


>AF036694-1|AAB88344.1|  260|Caenorhabditis elegans Proteasome alpha
           subunit protein 6 protein.
          Length = 260

 Score = 71.3 bits (167), Expect = 1e-12
 Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 24/187 (12%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRL+QVEYA+EA+     ++GI +    ++ A +R  N L       +K+Y+++     S
Sbjct: 17  GRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSH---QKKVYEIDTHAGVS 73

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305
           +AG+ SD  +L   L+     +   Y +++P K                   RPFGV IL
Sbjct: 74  IAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGIL 133

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL-AI 364
             G+DK  G  + Q+DPS        T IG  S +A + L++     E +  E   + A+
Sbjct: 134 IAGYDKD-GAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHAL 192

Query: 365 KVLSKTL 371
             L  TL
Sbjct: 193 LALRDTL 199


>AC006672-3|AAK84540.1|  239|Caenorhabditis elegans Proteasome beta
           subunit protein 1 protein.
          Length = 239

 Score = 37.5 bits (83), Expect = 0.018
 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 15/165 (9%)

Query: 212 YAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSD 271
           Y  E IS   T + +    G+++  + R +         + KI  + D+MV   +G  +D
Sbjct: 15  YPQEEISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAAD 74

Query: 272 ANVLTNELRLIAQRYLLQYGESIPCKRP--------------FGVSILYMGWDKHYGYQL 317
              + +  +     Y +   + +   R                  S+L  GWD+  G Q+
Sbjct: 75  TQAIADIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQV 134

Query: 318 YQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL 362
           Y     G     ++T  G+ S      L  +++ N  TL E +A+
Sbjct: 135 YAIPIGGFVSRQRSTASGSGSTFVQGFLDSQWRPN-LTLEECKAI 178


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 31.9 bits (69), Expect = 0.89
 Identities = 17/64 (26%), Positives = 33/64 (51%)

Query: 343 SSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTE 402
           +SL    +EN+  ++ A+    K+    +   K      ++   TR+D ++ ++IL+N E
Sbjct: 110 ASLFTLVRENKAKISTAEQNIRKLEPDVISAKKNLESSFQLRVQTREDKRSQMKILSNLE 169

Query: 403 VENS 406
            ENS
Sbjct: 170 AENS 173


>AC006637-5|AAM54176.2|  844|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 6, isoform a protein.
          Length = 844

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%)

Query: 92  LHIIFAGTGYQLFLVEAIMTLHRHNSWSSQLSKDSKRIIHGCLQLIGALFVLAGTFLALA 151
           L + F GTG     +  I + H  +S  + ++    RI    ++  GA F+   +F+AL 
Sbjct: 8   LLLSFLGTGVSSIRIGLITSHHLEHSVRTAVNIIVPRINEQIVKTRGACFITHTSFIALK 67

Query: 152 EVNMQINTAHGICGVIALAFTLVSFISGII 181
             +  +NT   IC    LA + VS I G++
Sbjct: 68  NSHEDLNTK--ICD---LANSEVSVIIGVV 92


>U55855-2|AAA98018.1|  204|Caenorhabditis elegans Proteasome beta
           subunit protein 3 protein.
          Length = 204

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%)

Query: 214 MEAISHAGTSLGILATDG-ILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDA 272
           M  +S+ G ++  +A D  + +A++ R   ++       +K++K+ D +   +AG  SDA
Sbjct: 1   MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60

Query: 273 NVLTNELRLIAQRYLLQYGESI 294
             +  ++      Y L+   +I
Sbjct: 61  RTVLEKIMFRKNLYELRENRNI 82


>U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical
           protein C28F5.4 protein.
          Length = 856

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%)

Query: 145 GTFLALAEVNMQINTAHGICGV-IALAFTLVSFISGIIALFSSKVRLMVKSGPVKILHLA 203
           G  ++L   N  I +  G+  V + L+   +  +  +I L  + +  +  SGP K +H  
Sbjct: 318 GWVISLEADNHTIASGFGVFSVTMDLSTEGLEHVDDVIQLVFNFIGFLKSSGPQKWIHDE 377

Query: 204 VGRLYQVEYAMEAISHAGTSLGILA 228
           +  L  V++  + + H      ILA
Sbjct: 378 LAELNAVDFRFDDVKHTMEKASILA 402


>AF068713-6|AAC17797.1|  282|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 67 protein.
          Length = 282

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%)

Query: 103 LFLVEAIMTLHRHNSWSSQLSKDSKRIIHGCLQLIGALFVLAG----TFLALAEVNMQIN 158
           LF +  +  +   +  S   S+ +  I + C  ++  L+VLAG    TF+ L  +   + 
Sbjct: 27  LFTIFCLKGITSKSDMSLVYSRFAADIGYSCSIIVFKLYVLAGMISKTFI-LKNIIFFVI 85

Query: 159 TAHGICGVIALAFTLVSFISGIIALFSSK 187
            A  I G+I  +   +  +  IIALFSS+
Sbjct: 86  RATVILGIIRTSLLFIISLDRIIALFSSQ 114


>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 308  GWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQ----EYKENETTLAEAQALA 363
            GW  ++   LY  D + N   W    I  NS   V++LK         +    ++     
Sbjct: 1520 GWFTNF--VLYPFDSTSNKDSWYPPTISRNSDDIVTALKNISTMSCPGSAPCSSQCPRPI 1577

Query: 364  IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRI 397
            + VLS  LDM  L      +  +TR   +  +++
Sbjct: 1578 VSVLSSILDMNALAAPNSVIVVITRSSPEDYLQV 1611


>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 308  GWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQ----EYKENETTLAEAQALA 363
            GW  ++   LY  D + N   W    I  NS   V++LK         +    ++     
Sbjct: 1520 GWFTNF--VLYPFDSTSNKDSWYPPTISRNSDDIVTALKNISTMSCPGSAPCSSQCPRPI 1577

Query: 364  IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRI 397
            + VLS  LDM  L      +  +TR   +  +++
Sbjct: 1578 VSVLSSILDMNALAAPNSVIVVITRSSPEDYLQV 1611


>Z70755-1|CAA94781.2|  292|Caenorhabditis elegans Hypothetical
           protein K06A4.1 protein.
          Length = 292

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 5/87 (5%)

Query: 308 GWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEY-----KENETTLAEAQAL 362
           G   HY +++YQ   S   GG+ A  I + +  +V   K++Y       N  TL +    
Sbjct: 192 GSASHYNFKIYQRAKSYYMGGYDANSIMHYNFGSVPWQKRDYFSPSDIRNINTLYKCNNR 251

Query: 363 AIKVLSKTLDMTKLTPEKVEMATLTRK 389
            +     T+  T  T  K     L  K
Sbjct: 252 VVSKFPSTIPSTSTTTTKAPQFELFEK 278


>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein
            T25C12.3 protein.
          Length = 2103

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%)

Query: 308  GWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQ----EYKENETTLAEAQALA 363
            GW  ++   LY  D + N   W    I  NS   V++LK         +    ++     
Sbjct: 1520 GWFTNF--VLYPFDSTSNKDSWYPPTISRNSDDIVTALKNISTMSCPGSAPCSSQCPRPI 1577

Query: 364  IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRI 397
            + VLS  LDM  L      +  +TR   +  +++
Sbjct: 1578 VSVLSSILDMNALAAPNSVIVVITRSSPEDYLQV 1611


>Z49909-3|CAA90107.2|  603|Caenorhabditis elegans Hypothetical
           protein C14A4.3 protein.
          Length = 603

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 92  LHIIFAGTGYQ------LFLVEAIMTLHRHN---SWSSQLSKDSKRIIHGCLQLIGALFV 142
           LH+   G G+Q      ++ + +   ++ H    S  + L  D+K ++   ++L   LF 
Sbjct: 86  LHLFLYGEGFQTWEYSPVYAIRSYFYIYLHYIPASLFANLFGDTKIVVFTLIRLTIGLFC 145

Query: 143 LAGTFLALAEVNMQINTAHGICGVIALAFTLVSFISGIIALFSS 186
           L G + A   +  +IN A G   ++   F+   F++    + SS
Sbjct: 146 LLGEYYAFDAICKKINIATGRFFILFSIFSSGMFLASTAFVPSS 189


>AF022983-6|AAK82915.1|   79|Caenorhabditis elegans Hypothetical
           protein R13D11.10 protein.
          Length = 79

 Score = 28.7 bits (61), Expect = 8.3
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 308 GWDKHYGYQLYQSDPSGNYGGWKATCIG 335
           GW    GY  Y   P G YGGW    +G
Sbjct: 38  GWGGRGGYGGYGYRPYGGYGGWGGRGMG 65


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,766,874
Number of Sequences: 27539
Number of extensions: 384170
Number of successful extensions: 1073
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 25
length of query: 424
length of database: 12,573,161
effective HSP length: 83
effective length of query: 341
effective length of database: 10,287,424
effective search space: 3508011584
effective search space used: 3508011584
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)

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