BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001915-TA|BGIBMGA001915-PA|IPR000243|Peptidase T1A, proteasome beta-subunit, IPR006593|Cytochrome b561 / ferric reductase transmembrane, IPR001353|20S proteasome, A and B subunits (424 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome al... 260 2e-69 Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical pr... 99 5e-21 Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical pr... 97 2e-20 Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical pr... 93 3e-19 Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical pr... 79 8e-15 Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 79 8e-15 AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome al... 71 1e-12 AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome be... 38 0.018 U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate fi... 32 0.89 AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate rec... 31 2.0 U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta... 30 2.7 U23180-3|AAC46729.2| 856|Caenorhabditis elegans Hypothetical pr... 30 2.7 AF068713-6|AAC17797.1| 282|Caenorhabditis elegans Serpentine re... 30 2.7 Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 6.3 Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 6.3 Z70755-1|CAA94781.2| 292|Caenorhabditis elegans Hypothetical pr... 29 6.3 Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 29 6.3 Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical pr... 29 8.3 AF022983-6|AAK82915.1| 79|Caenorhabditis elegans Hypothetical ... 29 8.3 >AC006708-4|AAF60416.2| 250|Caenorhabditis elegans Proteasome alpha subunit protein 3 protein. Length = 250 Score = 260 bits (636), Expect = 2e-69 Identities = 136/236 (57%), Positives = 170/236 (72%), Gaps = 22/236 (9%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 GRLYQVEYAMEAISHAGT LGIL+++GI++AAER+N +KLLD+ +EK+Y+L+D++ C+ Sbjct: 16 GRLYQVEYAMEAISHAGTCLGILSSEGIVVAAERKNVHKLLDDSVMTEKVYRLSDNISCT 75 Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP--------C-----------KRPFGVSIL 305 VAGIT+DAN+L N LR A Y YGE +P C KRPFGVS+L Sbjct: 76 VAGITADANILINHLRWWAASYRNSYGEEMPVEQLVQNLCNEKQRYTQIGGKRPFGVSLL 135 Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365 Y+GWDKHYGYQLYQSDPSGNY GWKATCIG+N AAV+ LKQEYK L EA+ LAIK Sbjct: 136 YIGWDKHYGYQLYQSDPSGNYTGWKATCIGSNHQAAVTLLKQEYK--SPNLEEAKQLAIK 193 Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSLPNSKRPKLKLKLPE 421 VL KTLD+ KL EKVEMA LTR+D KT++ LT EV+ + ++ + + + E Sbjct: 194 VLWKTLDV-KLASEKVEMAVLTRRDGKTVLEELTTKEVDALIAEHEKKEKEAETAE 248 >Z79754-8|CAB02097.1| 248|Caenorhabditis elegans Hypothetical protein F25H2.9 protein. Length = 248 Score = 99.1 bits (236), Expect = 5e-21 Identities = 68/205 (33%), Positives = 111/205 (54%), Gaps = 27/205 (13%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 GRL+QVEYA+EA+ TS+GI ++G+LLAAE+R+T+KL+ EKI K++ + + Sbjct: 19 GRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLMVNDAI-EKISKVDQHIGVT 77 Query: 265 VAGITSDANVLTNELRLIAQRY--------------------LLQYGE---SIPCKRPFG 301 AG+ +D+ L ++ AQ + LQ+G+ RPFG Sbjct: 78 FAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLALQFGDDDVKASMSRPFG 137 Query: 302 VSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQA 361 V++L+ G D+ G +L+ DPSG + KA IG S A +LK++Y + T+ E Sbjct: 138 VAMLFAGVDQE-GAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQY-HDALTIKEGLK 195 Query: 362 LAIKVLSKTLDMTKLTPEKVEMATL 386 +A+ +L + ++ KL VE+ + Sbjct: 196 MALAILKQVME-EKLNSANVEVVVI 219 >Z74030-2|CAA98441.1| 231|Caenorhabditis elegans Hypothetical protein D1054.2 protein. Length = 231 Score = 97.5 bits (232), Expect = 2e-20 Identities = 70/223 (31%), Positives = 109/223 (48%), Gaps = 30/223 (13%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 G+L Q+EYA+ A+ + S+G+ A DG++LA E N +L + K+ +++ + C Sbjct: 16 GKLMQIEYALNAVKNGQPSVGLRAKDGVVLATE--NVGSVLTDD--QPKVEQISKHIGCV 71 Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPC-------------------KRPFGVSIL 305 +G+ D +L + R IA Y + YGE +P RPFG S+L Sbjct: 72 YSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLL 131 Query: 306 YMGWDKHYGYQL-YQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAI 364 GWDK+ G L +Q DPSG Y WKAT +G N A + L++ + E L + A+ Sbjct: 132 IAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSE-ALELDDGIHTAL 190 Query: 365 KVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407 L ++ D+ + VE+A N T LT +V + L Sbjct: 191 LTLRESFDV-GMNENNVEVAVC----NSTGFHRLTKQQVHDHL 228 >Z80215-2|CAB02269.1| 253|Caenorhabditis elegans Hypothetical protein C36B1.4 protein. Length = 253 Score = 93.5 bits (222), Expect = 3e-19 Identities = 63/238 (26%), Positives = 119/238 (50%), Gaps = 22/238 (9%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 G L+QVEYA EA+ T++G+ D I++ E+++ L D+ KI+ ++D ++ + Sbjct: 15 GHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKKSIPALQDDRTI-RKIHMIDDHVMLA 73 Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESI-------------------PCKRPFGVSIL 305 AG+++DA VL + R+ Q Y L + + P +RPFG+S+L Sbjct: 74 FAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISML 133 Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365 G+D +L++++PSG Y + A G L+++Y E E T+ EA L + Sbjct: 134 IGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSE-ENTVDEATTLKL- 191 Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSLPNSKRPKLKLKLPETA 423 V+ + + +E+A + + +++ R+L+ E+E L + ++ + E A Sbjct: 192 VVKSLAQVVPPGSQNIEIAVMKKVNDELQQRVLSTEEIEALLKVVETERVAAEAEEAA 249 >Z81035-5|CAB02738.1| 246|Caenorhabditis elegans Hypothetical protein C15H11.7 protein. Length = 246 Score = 78.6 bits (185), Expect = 8e-15 Identities = 60/224 (26%), Positives = 111/224 (49%), Gaps = 25/224 (11%) Query: 205 GRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVC 263 GR+YQVEYA +AI+ T++ + D ++A ++R + L+ + +Y+++ + C Sbjct: 20 GRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVTS-VYQISQSVGC 78 Query: 264 SVAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSI 304 G+ DA + A + + G +PC+ R G ++ Sbjct: 79 CAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCAL 138 Query: 305 LYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEY-KENETTLAEAQALA 363 L++ +D G ++Y+ DP+G Y G K +G A S L+++ K++E T EA LA Sbjct: 139 LFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELA 198 Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407 I+ L +L + + + +E+ +T KDN + LT+ +VE+ L Sbjct: 199 IEALQTSLGI-DVRSKDLEVVVVT-KDNSKFTK-LTSDQVEHHL 239 >Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical protein ZK945.2 protein. Length = 250 Score = 78.6 bits (185), Expect = 8e-15 Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 20/205 (9%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 GR++QVEYA +A+ +AGT + I +G+++ A++ ++KL + + +++ +ND++ + Sbjct: 19 GRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSKLYTD-NANPRMFNVNDNVGVA 77 Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK------------------RPFGVSILY 306 VAG D L N A ++L Y E +P + RPFG + Sbjct: 78 VAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHTLGISRPFGAGAFF 137 Query: 307 MGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKV 366 M W+K G +L+ +PSG +KA +G + AA + + ++ K E + + A ++ Sbjct: 138 MSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHRQAAKAEI-EKLKIEELDVNQLVKEAARI 196 Query: 367 LSKTLDMTKLTPEKVEMATLTRKDN 391 + D K ++EM + + N Sbjct: 197 IMVVRDENKDKNVQIEMGWVGEQTN 221 >AF036694-1|AAB88344.1| 260|Caenorhabditis elegans Proteasome alpha subunit protein 6 protein. Length = 260 Score = 71.3 bits (167), Expect = 1e-12 Identities = 55/187 (29%), Positives = 87/187 (46%), Gaps = 24/187 (12%) Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264 GRL+QVEYA+EA+ ++GI + ++ A +R N L +K+Y+++ S Sbjct: 17 GRLHQVEYAVEAMKQGSATVGIKSETHAVIVALKRAQNDLSSH---QKKVYEIDTHAGVS 73 Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305 +AG+ SD +L L+ + Y +++P K RPFGV IL Sbjct: 74 IAGLLSDGRILARYLQTECSSWRWDYKQAVPIKKLAESMQLKLQANTQYYGRRPFGVGIL 133 Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL-AI 364 G+DK G + Q+DPS T IG S +A + L++ E + E + A+ Sbjct: 134 IAGYDKD-GAHIIQTDPSAEVVSMHGTSIGARSQSARTYLERNVDNFEKSTPEQLIVHAL 192 Query: 365 KVLSKTL 371 L TL Sbjct: 193 LALRDTL 199 >AC006672-3|AAK84540.1| 239|Caenorhabditis elegans Proteasome beta subunit protein 1 protein. Length = 239 Score = 37.5 bits (83), Expect = 0.018 Identities = 34/165 (20%), Positives = 63/165 (38%), Gaps = 15/165 (9%) Query: 212 YAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSD 271 Y E IS T + + G+++ + R + + KI + D+MV +G +D Sbjct: 15 YPQEEISTGTTLIAMEYNGGVVVGTDSRTSAGSFITSRATNKITPITDNMVVCRSGSAAD 74 Query: 272 ANVLTNELRLIAQRYLLQYGESIPCKRP--------------FGVSILYMGWDKHYGYQL 317 + + + Y + + + R S+L GWD+ G Q+ Sbjct: 75 TQAIADIAKYHIDVYTMTENKPVTIYRSSQIFRQFLYNYREQLSASVLVAGWDEELGGQV 134 Query: 318 YQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL 362 Y G ++T G+ S L +++ N TL E +A+ Sbjct: 135 YAIPIGGFVSRQRSTASGSGSTFVQGFLDSQWRPN-LTLEECKAI 178 >U50197-4|AAA91257.1| 443|Caenorhabditis elegans Intermediate filament, d protein 2 protein. Length = 443 Score = 31.9 bits (69), Expect = 0.89 Identities = 17/64 (26%), Positives = 33/64 (51%) Query: 343 SSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTE 402 +SL +EN+ ++ A+ K+ + K ++ TR+D ++ ++IL+N E Sbjct: 110 ASLFTLVRENKAKISTAEQNIRKLEPDVISAKKNLESSFQLRVQTREDKRSQMKILSNLE 169 Query: 403 VENS 406 ENS Sbjct: 170 AENS 173 >AC006637-5|AAM54176.2| 844|Caenorhabditis elegans Glutamate receptor family (ampa)protein 6, isoform a protein. Length = 844 Score = 30.7 bits (66), Expect = 2.0 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 5/90 (5%) Query: 92 LHIIFAGTGYQLFLVEAIMTLHRHNSWSSQLSKDSKRIIHGCLQLIGALFVLAGTFLALA 151 L + F GTG + I + H +S + ++ RI ++ GA F+ +F+AL Sbjct: 8 LLLSFLGTGVSSIRIGLITSHHLEHSVRTAVNIIVPRINEQIVKTRGACFITHTSFIALK 67 Query: 152 EVNMQINTAHGICGVIALAFTLVSFISGII 181 + +NT IC LA + VS I G++ Sbjct: 68 NSHEDLNTK--ICD---LANSEVSVIIGVV 92 >U55855-2|AAA98018.1| 204|Caenorhabditis elegans Proteasome beta subunit protein 3 protein. Length = 204 Score = 30.3 bits (65), Expect = 2.7 Identities = 18/82 (21%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Query: 214 MEAISHAGTSLGILATDG-ILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDA 272 M +S+ G ++ +A D + +A++ R ++ +K++K+ D + +AG SDA Sbjct: 1 MSIMSYTGGTVVAMAGDECVCIASDLRIGEQMTTIATDQKKVHKVTDKVYVGLAGFQSDA 60 Query: 273 NVLTNELRLIAQRYLLQYGESI 294 + ++ Y L+ +I Sbjct: 61 RTVLEKIMFRKNLYELRENRNI 82 >U23180-3|AAC46729.2| 856|Caenorhabditis elegans Hypothetical protein C28F5.4 protein. Length = 856 Score = 30.3 bits (65), Expect = 2.7 Identities = 20/85 (23%), Positives = 38/85 (44%), Gaps = 1/85 (1%) Query: 145 GTFLALAEVNMQINTAHGICGV-IALAFTLVSFISGIIALFSSKVRLMVKSGPVKILHLA 203 G ++L N I + G+ V + L+ + + +I L + + + SGP K +H Sbjct: 318 GWVISLEADNHTIASGFGVFSVTMDLSTEGLEHVDDVIQLVFNFIGFLKSSGPQKWIHDE 377 Query: 204 VGRLYQVEYAMEAISHAGTSLGILA 228 + L V++ + + H ILA Sbjct: 378 LAELNAVDFRFDDVKHTMEKASILA 402 >AF068713-6|AAC17797.1| 282|Caenorhabditis elegans Serpentine receptor, class bc (class b-like) protein 67 protein. Length = 282 Score = 30.3 bits (65), Expect = 2.7 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 5/89 (5%) Query: 103 LFLVEAIMTLHRHNSWSSQLSKDSKRIIHGCLQLIGALFVLAG----TFLALAEVNMQIN 158 LF + + + + S S+ + I + C ++ L+VLAG TF+ L + + Sbjct: 27 LFTIFCLKGITSKSDMSLVYSRFAADIGYSCSIIVFKLYVLAGMISKTFI-LKNIIFFVI 85 Query: 159 TAHGICGVIALAFTLVSFISGIIALFSSK 187 A I G+I + + + IIALFSS+ Sbjct: 86 RATVILGIIRTSLLFIISLDRIIALFSSQ 114 >Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical protein T25C12.3 protein. Length = 2103 Score = 29.1 bits (62), Expect = 6.3 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%) Query: 308 GWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQ----EYKENETTLAEAQALA 363 GW ++ LY D + N W I NS V++LK + ++ Sbjct: 1520 GWFTNF--VLYPFDSTSNKDSWYPPTISRNSDDIVTALKNISTMSCPGSAPCSSQCPRPI 1577 Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRI 397 + VLS LDM L + +TR + +++ Sbjct: 1578 VSVLSSILDMNALAAPNSVIVVITRSSPEDYLQV 1611 >Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical protein T25C12.3 protein. Length = 2103 Score = 29.1 bits (62), Expect = 6.3 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%) Query: 308 GWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQ----EYKENETTLAEAQALA 363 GW ++ LY D + N W I NS V++LK + ++ Sbjct: 1520 GWFTNF--VLYPFDSTSNKDSWYPPTISRNSDDIVTALKNISTMSCPGSAPCSSQCPRPI 1577 Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRI 397 + VLS LDM L + +TR + +++ Sbjct: 1578 VSVLSSILDMNALAAPNSVIVVITRSSPEDYLQV 1611 >Z70755-1|CAA94781.2| 292|Caenorhabditis elegans Hypothetical protein K06A4.1 protein. Length = 292 Score = 29.1 bits (62), Expect = 6.3 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 5/87 (5%) Query: 308 GWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEY-----KENETTLAEAQAL 362 G HY +++YQ S GG+ A I + + +V K++Y N TL + Sbjct: 192 GSASHYNFKIYQRAKSYYMGGYDANSIMHYNFGSVPWQKRDYFSPSDIRNINTLYKCNNR 251 Query: 363 AIKVLSKTLDMTKLTPEKVEMATLTRK 389 + T+ T T K L K Sbjct: 252 VVSKFPSTIPSTSTTTTKAPQFELFEK 278 >Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical protein T25C12.3 protein. Length = 2103 Score = 29.1 bits (62), Expect = 6.3 Identities = 22/94 (23%), Positives = 37/94 (39%), Gaps = 6/94 (6%) Query: 308 GWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQ----EYKENETTLAEAQALA 363 GW ++ LY D + N W I NS V++LK + ++ Sbjct: 1520 GWFTNF--VLYPFDSTSNKDSWYPPTISRNSDDIVTALKNISTMSCPGSAPCSSQCPRPI 1577 Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRI 397 + VLS LDM L + +TR + +++ Sbjct: 1578 VSVLSSILDMNALAAPNSVIVVITRSSPEDYLQV 1611 >Z49909-3|CAA90107.2| 603|Caenorhabditis elegans Hypothetical protein C14A4.3 protein. Length = 603 Score = 28.7 bits (61), Expect = 8.3 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 9/104 (8%) Query: 92 LHIIFAGTGYQ------LFLVEAIMTLHRHN---SWSSQLSKDSKRIIHGCLQLIGALFV 142 LH+ G G+Q ++ + + ++ H S + L D+K ++ ++L LF Sbjct: 86 LHLFLYGEGFQTWEYSPVYAIRSYFYIYLHYIPASLFANLFGDTKIVVFTLIRLTIGLFC 145 Query: 143 LAGTFLALAEVNMQINTAHGICGVIALAFTLVSFISGIIALFSS 186 L G + A + +IN A G ++ F+ F++ + SS Sbjct: 146 LLGEYYAFDAICKKINIATGRFFILFSIFSSGMFLASTAFVPSS 189 >AF022983-6|AAK82915.1| 79|Caenorhabditis elegans Hypothetical protein R13D11.10 protein. Length = 79 Score = 28.7 bits (61), Expect = 8.3 Identities = 12/28 (42%), Positives = 13/28 (46%) Query: 308 GWDKHYGYQLYQSDPSGNYGGWKATCIG 335 GW GY Y P G YGGW +G Sbjct: 38 GWGGRGGYGGYGYRPYGGYGGWGGRGMG 65 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.319 0.132 0.384 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,766,874 Number of Sequences: 27539 Number of extensions: 384170 Number of successful extensions: 1073 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 1045 Number of HSP's gapped (non-prelim): 25 length of query: 424 length of database: 12,573,161 effective HSP length: 83 effective length of query: 341 effective length of database: 10,287,424 effective search space: 3508011584 effective search space used: 3508011584 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 61 (28.7 bits)
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