GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001915-TA|BGIBMGA001915-PA|IPR000243|Peptidase T1A,
proteasome beta-subunit, IPR006593|Cytochrome b561 / ferric reductase
transmembrane, IPR001353|20S proteasome, A and B subunits
         (424 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    26   0.69 
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   3.7  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.7  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.8 bits (54), Expect = 0.69
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 352 NETT-LAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNT 401
           N TT + E  +LA++ + +T  M  +  EK E   + +  + +  R+ +NT
Sbjct: 183 NATTGMGELVSLAVQAIDRTNTMVYIADEKGEGLIMYQNSDDSFHRLTSNT 233


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 191 MVKSGPVKILHLAVGRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFF 250
           ++ S P+  + L   +      + + I HAG +L IL    +L        ++L+  V  
Sbjct: 173 LISSIPLDYIFLIFNQFQDFSESFQ-ILHAGRALRILRLAKLLSLVRLLRLSRLVRYVSQ 231

Query: 251 SEKIYKLN 258
            E++Y LN
Sbjct: 232 WEEVYFLN 239


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 7/28 (25%), Positives = 15/28 (53%)

Query: 43  LYNSSWDSAWRSICQLFNLLQHMQVAIV 70
           L+ + W   WRS+  LF+    + + ++
Sbjct: 113 LFTTDWCDVWRSLDVLFSTASILNLCVI 140


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,846
Number of Sequences: 429
Number of extensions: 4159
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 424
length of database: 140,377
effective HSP length: 60
effective length of query: 364
effective length of database: 114,637
effective search space: 41727868
effective search space used: 41727868
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 45 (22.2 bits)