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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001915-TA|BGIBMGA001915-PA|IPR000243|Peptidase T1A,
proteasome beta-subunit, IPR006593|Cytochrome b561 / ferric reductase
transmembrane, IPR001353|20S proteasome, A and B subunits
         (424 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (...   213   1e-55
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ...   116   4e-26
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ...   114   1e-25
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ...   106   2e-23
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)        105   6e-23
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ...   101   7e-22
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (...   101   1e-21
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ...    90   2e-18
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t...    90   2e-18
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ...    87   2e-17
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ...    82   8e-16
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ...    80   3e-15
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (...    73   3e-13
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P...    47   2e-05
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa...    33   0.36 
At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2) (...    33   0.48 
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote...    32   0.63 
At1g04650.1 68414.m00462 hypothetical protein                          32   0.63 
At1g72480.1 68414.m08381 expressed protein                             31   1.9  
At5g23540.1 68418.m02763 26S proteasome regulatory subunit, puta...    30   3.4  
At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1) (P...    30   3.4  
At5g47470.1 68418.m05862 nodulin MtN21 family protein integral m...    29   5.9  
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS...    29   7.8  

>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
           (PRC9) identical to GB:AAC32057 from [Arabidopsis
           thaliana] (Genetics (1998) 149 (2), 677-692); identical
           to cDNA proteasome subunit prc9 GI:2511583
          Length = 250

 Score =  213 bits (521), Expect = 1e-55
 Identities = 108/209 (51%), Positives = 144/209 (68%), Gaps = 20/209 (9%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRLYQVEYAMEAI +AG+++GIL+ DG++L  E++ T+KLL     +EK+YK++D + C+
Sbjct: 16  GRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACA 75

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305
           VAGI SDAN+L N  R+ AQRY   Y E +P +                   RPFGVS L
Sbjct: 76  VAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFL 135

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
           + GWDKH+G+QLY SDPSGNYGGWKA  +G N+ AA S LKQ+YK+ + T  EA  LA+K
Sbjct: 136 FAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKD-DATREEAVELALK 194

Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNKTI 394
           VL+KT+D T LT EK+E+A +    +KT+
Sbjct: 195 VLTKTMDSTSLTSEKLELAEVYLTPSKTV 223


>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
           identical to 20S proteasome subunit PAE2 GB:AAC32061
           from [Arabidopsis thaliana]
          Length = 237

 Score =  116 bits (278), Expect = 4e-26
 Identities = 72/202 (35%), Positives = 116/202 (57%), Gaps = 26/202 (12%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRL+QVEYA+EAI    T++G+   +G++LA E+R T+ LL E    EKI +++D + C+
Sbjct: 19  GRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLL-EPSSVEKIMEIDDHIGCA 77

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP--------C--------------KRPFGV 302
           ++G+ +DA  L    R+  Q +   YGE +         C               RPFGV
Sbjct: 78  MSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGV 137

Query: 303 SILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL 362
           S+L  G D++ G  LY +DPSG +    A  IG+ S  A SSL++++ + + TL EA+ +
Sbjct: 138 SLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNK-DITLQEAETI 195

Query: 363 AIKVLSKTLDMTKLTPEKVEMA 384
           A+ +L + ++  K+TP  V++A
Sbjct: 196 AVSILKQVME-EKVTPNNVDIA 216


>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
           identical to 20S proteasome subunit PAE1 GI:3421087 from
           [Arabidopsis thaliana]
          Length = 237

 Score =  114 bits (274), Expect = 1e-25
 Identities = 71/202 (35%), Positives = 116/202 (57%), Gaps = 26/202 (12%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRL+QVEYA+EAI    T++G+   +G++LA E+R T+ LL E    EKI +++D + C+
Sbjct: 19  GRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLL-EPSSVEKIMEIDDHIGCA 77

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP--------C--------------KRPFGV 302
           ++G+ +DA  L    R+  Q +   YGE +         C               RPFGV
Sbjct: 78  MSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGV 137

Query: 303 SILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL 362
           S+L  G D++ G  LY +DPSG +    A  IG+ S  A SSL++++ + + +L EA+ +
Sbjct: 138 SLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNK-DLSLQEAETI 195

Query: 363 AIKVLSKTLDMTKLTPEKVEMA 384
           A+ +L + ++  K+TP  V++A
Sbjct: 196 AVSILKQVME-EKVTPNNVDIA 216


>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
           (PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
           alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
           subunit D2) {Arabidopsis thaliana}
          Length = 250

 Score =  106 bits (255), Expect = 2e-23
 Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 28/220 (12%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           G L+QVEYA+EA+     ++G+  TD ++LA E+++T KL D    + KI  L++ +  +
Sbjct: 15  GHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRS-ARKIVSLDNHIALA 73

Query: 265 VAGITSDANVLTNELRLIAQ------------RYLLQYGESIPCK-------RPFGVSIL 305
            AG+ +DA VL N+ R+  Q             Y+ +Y   +  K       RPFG+S L
Sbjct: 74  CAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTL 133

Query: 306 YMGWDKHYGY-QLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAI 364
            +G+D +     LYQ+DPSG +  WKA   G NS +    L++ YKE+     E   LAI
Sbjct: 134 IVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKESSG--QETIKLAI 191

Query: 365 KVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVE 404
           + L   L++ +   + +E+A +TR++  T +R L   E++
Sbjct: 192 RAL---LEVVESGGKNIEVAVMTREE--TGLRQLEEAEID 226


>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
          Length = 250

 Score =  105 bits (252), Expect = 6e-23
 Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 28/220 (12%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           G L+QVEYA+EA+     ++G+  TD ++LA E+++T KL D    + KI  L++ +  +
Sbjct: 15  GHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRS-ARKIVSLDNHIALA 73

Query: 265 VAGITSDANVLTNELRLIAQ------------RYLLQYGESIPCK-------RPFGVSIL 305
            AG+ +DA VL N+ R+  Q             Y+ +Y   +  K       RPFG+S L
Sbjct: 74  CAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTL 133

Query: 306 YMGWDKHYGYQ-LYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAI 364
            +G+D +     LYQ+DPSG +  WKA   G NS +    L++ YKE+     E   LAI
Sbjct: 134 IVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKESAG--QETVKLAI 191

Query: 365 KVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVE 404
           + L   L++ +   + +E+A +TR++   +++ L   E++
Sbjct: 192 RAL---LEVVESGGKNIEVAVMTREEG--VLKQLEEEEID 226


>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
           nearly identical to SP|O23708 Proteasome subunit alpha
           type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
           {Arabidopsis thaliana} and to At1g16470
          Length = 235

 Score =  101 bits (243), Expect = 7e-22
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 26/222 (11%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           G+L Q+E+A+ A+    TSLGI A++G+++A E++  + L+DE    +KI  L  ++   
Sbjct: 17  GKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASV-QKIQHLTPNIGTV 75

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305
            +G+  D  VL  + R  A++YL  Y E IP                     RPFGVS+L
Sbjct: 76  YSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLL 135

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
             G+D   G QLYQ DPSG+Y  WKA+ +G N + A + L++ Y E +  L +A   AI 
Sbjct: 136 VAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE-DMELDDAIHTAIL 193

Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
            L +  +  +++ + +E+  +       + R+LT  E+++ L
Sbjct: 194 TLKEGFE-GEISSKNIEIGKI---GTDKVFRVLTPAEIDDYL 231


>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
           (PRC3) identical to proteasome subunit alpha type 2
           SP:O23708, GI:6093778; identical to cDNA proteasome
           subunit prc3 GI:2511573
          Length = 235

 Score =  101 bits (241), Expect = 1e-21
 Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 26/222 (11%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           G+L Q+E+A+ A+    TSLGI A++G+++A E++  + L+DE    +KI  L  ++   
Sbjct: 17  GKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASV-QKIQHLTPNIGVV 75

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305
            +G+  D  VL  + R  A++YL  Y E IP                     RPFGVS+L
Sbjct: 76  YSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLL 135

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
             G+D   G QLYQ DPSG+Y  WKA+ +G N + A + L++ Y E +  L +A   AI 
Sbjct: 136 VAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE-DMELDDAIHTAIL 193

Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
            L +  +  +++ + +E+  +       + R+LT  E+++ L
Sbjct: 194 TLKEGFE-GEISSKNIEIGKI---GADKVFRVLTPAEIDDYL 231


>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
           (PRC1) identical to proteasome subunit alpha type 6-1
           SP:O81146 GI:12643647 from [Arabidopsis thaliana];
           identical to cDNA proteasome subunit prc1 GI:2511587
          Length = 246

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 69/224 (30%), Positives = 107/224 (47%), Gaps = 25/224 (11%)

Query: 205 GRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVC 263
           GRL+QVEYA +A+  AG TS+G+   D + +  +++  +KLLD+   +  ++ +   +  
Sbjct: 20  GRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTH-LFPITKYIGL 78

Query: 264 SVAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSI 304
              GIT+DA  L  + R  A  +   YG  +P                     RP GV  
Sbjct: 79  VATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVA 138

Query: 305 LYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENET-TLAEAQALA 363
           + MG D+  G  LY+ DP+G++ G KAT  G     AV+ L+++ KEN + T  E    A
Sbjct: 139 MVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTA 198

Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
           I  L   L        ++E+  + R +N    R LT  E+E  L
Sbjct: 199 ISALQSVL-QEDFKATEIEVG-VVRAENPE-FRALTTEEIEEHL 239


>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein similar to
           SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
           Lycopersicon esculentum, proline-rich cell wall protein
           [Medicago sativa] GI:3818416; contains Pfam profile
           PF00234 Protease inhibitor/seed storage/LTP family
          Length = 428

 Score = 90.2 bits (214), Expect = 2e-18
 Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 5/121 (4%)

Query: 253 KIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIP--CKRPFGVSILYMGWD 310
           K  +L   +V  +  +  D  VL  E ++ ++  LLQ   S+    K    V+    GWD
Sbjct: 305 KFLQLLAMLVLPLEFLAKDGVVLVGEKKVTSK--LLQTSSSMEKMYKIDDHVACAVAGWD 362

Query: 311 KHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKT 370
           +++G+QLY SDPSGNYGGW+A  +G N+ AA S LKQ+YK+ + T  E   LAIKVLSKT
Sbjct: 363 RNHGFQLYMSDPSGNYGGWQAAAVGANNQAAQSILKQDYKD-DATREEVVQLAIKVLSKT 421

Query: 371 L 371
           +
Sbjct: 422 M 422



 Score = 45.2 bits (102), Expect = 8e-05
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 224 LGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAG 267
           L  LA DG++L  E++ T+KLL      EK+YK++D + C+VAG
Sbjct: 317 LEFLAKDGVVLVGEKKVTSKLLQTSSSMEKMYKIDDHVACAVAG 360


>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
           identical to GB:AF043519
          Length = 246

 Score = 87.0 bits (206), Expect = 2e-17
 Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 25/224 (11%)

Query: 205 GRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVC 263
           GRL+QVEYA +A+  AG TS+G+   D + +  +++  +KLLD+   S  ++ +   +  
Sbjct: 20  GRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSH-LFPVTKYLGL 78

Query: 264 SVAGITSDANVLTNELRLIAQRYLLQYGESIPC-------------------KRPFGVSI 304
              G+T+D+  L  + R  A  +  QYG  +P                     RP GV  
Sbjct: 79  LATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVA 138

Query: 305 LYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENET-TLAEAQALA 363
           + +G D+  G  LY+ DP+G++ G KAT  G     AV+ L+++ KEN   T  E    A
Sbjct: 139 MVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTA 198

Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
           I  L   L        ++E+  +   D   + R L   E++  L
Sbjct: 199 ISALQSVL-QEDFKATEIEVGVVRADD--PLFRSLRTEEIDEHL 239


>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
           (PRC2B) (PRS1) identical to GB:AAC32063 from
           [Arabidopsis thaliana] (Genetics 149 (2), 677-692
           (1998)); identical to cDNA proteasome subunit prc2b
           GI:2511585
          Length = 277

 Score = 81.8 bits (193), Expect = 8e-16
 Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 24/187 (12%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRL+QVEYAMEA+     ++G+ +   ++LA   +  ++L        KI+K++D +  +
Sbjct: 17  GRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSH---QRKIFKVDDHIGVA 73

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP--------------C-----KRPFGVSIL 305
           +AG+T+D  VL+  +R  +  +   Y   +P              C     KRP+GV +L
Sbjct: 74  IAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLL 133

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKE-NETTLAEAQALAI 364
             G D+  G  LY + PSGNY  ++A  IG+ S AA + L+++++   E++  +    AI
Sbjct: 134 VGGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAI 192

Query: 365 KVLSKTL 371
             + +TL
Sbjct: 193 MAIRETL 199


>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
           (gb|AAC32062.1)
          Length = 278

 Score = 79.8 bits (188), Expect = 3e-15
 Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 23/165 (13%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GRL+QVEYAMEA+     ++G+ +   ++LA   +  ++L        KI+K++D +  +
Sbjct: 17  GRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSH---QRKIFKVDDHIGVA 73

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP--------------C-----KRPFGVSIL 305
           +AG+T+D  VL+  +R  +  +   Y   +P              C     KRP+GV +L
Sbjct: 74  IAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLL 133

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYK 350
             G D+  G  LY + PSGNY  ++A  IG+ S AA + L++ ++
Sbjct: 134 VGGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE 177


>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
           (PRC8) identical to proteasome subunit alpha type 3
           SP:O23715, GI:12644056 from [Arabidopsis thaliana];
           identical to cDNA proteasome subunit prc8 GI:2511591
          Length = 249

 Score = 73.3 bits (172), Expect = 3e-13
 Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 22/207 (10%)

Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
           GR++Q+EYA +A+ ++GT +GI   DGI++  E+   +K++     + +I+ ++     +
Sbjct: 19  GRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMM-LPGSNRRIHSVHRHAGMA 77

Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305
           VAG+ +D   +    +  A+ Y   YG+++P K                   RPFG  ++
Sbjct: 78  VAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVI 137

Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
             G+D+  G QLY  +PSG    +    IG    AA + + ++   +E T  E      K
Sbjct: 138 LGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGKQAAKTEI-EKLNLSEMTCKEGVIEVAK 195

Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNK 392
           ++ K  D  K    ++EM+ +  +  +
Sbjct: 196 IIYKLHDEAKDKAFELEMSWICEESKR 222


>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
           (PRCD) identical to cDNA proteasome subunit prcd
           GI:2511593
          Length = 233

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 15/161 (9%)

Query: 222 TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDANVLTNELRL 281
           T +G+    G++L A+ R +  +      S+KI +L D++    +G  +D+ V+++ +R 
Sbjct: 14  TIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRY 73

Query: 282 IAQRYLLQYGESIPC--------------KRPFGVSILYMGWDKHYGYQLYQSDPSGNYG 327
              ++ +Q+G+                  K      ++  GWDK+ G ++Y     G   
Sbjct: 74  FLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVV 133

Query: 328 GWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLS 368
                  G+ S+       Q +K+N  T  EA+ L +K +S
Sbjct: 134 EQPFAIGGSGSSYLYGFFDQAWKDN-MTKEEAEQLVVKAVS 173


>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
           family protein low similarity to polycomb-M33
           interacting protein Ring1B [Mus musculus] GI:2239142;
           contains Pfam profile PF00097: Zinc finger, C3HC4 type
           (RING finger)
          Length = 427

 Score = 33.1 bits (72), Expect = 0.36
 Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 7/93 (7%)

Query: 327 GGWKA-TCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMAT 385
           GG ++ T  GNN+  A+S      K     L   +  +++ +++ L   KL  E+VE+  
Sbjct: 318 GGTRSNTRQGNNNQGAISKRNARLKRLVEYLGSLEGNSVEYVARHL---KLKAEEVEL-- 372

Query: 386 LTRKDNKTIIRILTNTEVENSLPNSKR-PKLKL 417
           L  KD  T+I   T+TE   SL + +   KLK+
Sbjct: 373 LVSKDGDTVIGNKTSTEKMQSLQDDETVAKLKV 405


>At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2)
           (PRCGA) identical to SP|O24633 Proteasome subunit beta
           type 2-2 (EC 3.4.25.1) (20S proteasome alpha subunit D2)
           {Arabidopsis thaliana}, cDNA proteasome subunit prcga
           GI:2511571
          Length = 199

 Score = 32.7 bits (71), Expect = 0.48
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)

Query: 297 KRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTL 356
           K P+ V+IL  G+DK  G  LY  D             G  S  ++S++ + Y+ ++ ++
Sbjct: 94  KNPYSVNILMAGYDKEAGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYR-SDMSV 152

Query: 357 AEAQALAIKVLSKTLDMTKLTP 378
            EA  L  K + +      + P
Sbjct: 153 EEAIELVDKCILEIRSRLVIAP 174


>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 751

 Score = 32.3 bits (70), Expect = 0.63
 Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 4/52 (7%)

Query: 222 TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDAN 273
           TSL  L TDG+LL + R +   ++D+  +  + ++ +D+  CS  G+T DA+
Sbjct: 27  TSLA-LTTDGVLLLSFRYS---IVDDPLYVFRSWRFDDETPCSWRGVTCDAS 74


>At1g04650.1 68414.m00462 hypothetical protein
          Length = 936

 Score = 32.3 bits (70), Expect = 0.63
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 367 LSKTLDMTKLTPEKVEMATLTRKDN--KTIIRILTNTEVENSLPNSKRPKLKLKLPETAC 424
           L K   +  +TP + E+  L+++    K  ++ L     + S+   KRP  K KLPE  C
Sbjct: 821 LEKEQALLSITPSEEELELLSKEGTEVKATVQKLLEGRSQRSMEVEKRPNKKRKLPEGIC 880


>At1g72480.1 68414.m08381 expressed protein 
          Length = 509

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 39  ESGDLYNSSWDSAWRSICQLFNLLQHMQVAIVVFSLW 75
           +S D+YN  W +AW  I   F  L    + IV+ SLW
Sbjct: 407 KSKDVYNEHWQNAW--IIPAFWQLLSFSLLIVICSLW 441


>At5g23540.1 68418.m02763 26S proteasome regulatory subunit,
           putative similar to 26S proteasome-associated pad1
           homolog [Homo sapiens] GI:1923256, 26S proteasome,
           non-ATPase subunit [Mus musculus] GI:2505940; contains
           Pfam profile PF01398: Mov34/MPN/PAD-1 family
          Length = 308

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 350 KENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDNK 392
           K NE T+ E  +LA K      +  +L+PEK+ +  + R+D K
Sbjct: 238 KTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAK 280


>At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1)
           (PRGB) identical to GB:CAA74026 from [Arabidopsis
           thaliana] ( FEBS Lett. (1997) 416 (3), 281-285);
           identical to cDNA proteasome subunit prgb GI:2511589
          Length = 204

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 297 KRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTL 356
           K P+ V+IL  G+D   G  LY  D             G  S  ++S++ + Y+ ++ ++
Sbjct: 94  KNPYSVNILMAGYDDESGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYR-SDMSV 152

Query: 357 AEAQALAIKVL 367
            EA  L  K +
Sbjct: 153 EEAIELVDKCI 163


>At5g47470.1 68418.m05862 nodulin MtN21 family protein integral
           membrane protein domain (PF00892); similar to MtN21
           GI:2598575 (root nodule development) from [Medicago
           truncatula]
          Length = 364

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 3/70 (4%)

Query: 125 DSKRIIHGCLQLIGALFVLAGTFLALAEVNMQINTAHGICGVIALAFTLVSFISGIIALF 184
           D  +++ GC+ L+GA+FVL+   +  A    +      +  + AL   L++ +  ++ L 
Sbjct: 193 DRDKVV-GCIYLLGAVFVLSTNVVLQASTLAEFPAPISLSAITALLGVLITTV--VLLLQ 249

Query: 185 SSKVRLMVKS 194
           + K +++  S
Sbjct: 250 NRKTKVLASS 259


>At4g26090.1 68417.m03756 disease resistance protein RPS2
           (CC-NBS-LRR class), putative domain signature CC-NBS-LRR
           exists, suggestive of a disease resistance protein.
           identical to RPS2 (gi:13661831)
          Length = 909

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 325 NYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKTL 371
           +Y GW+    G + A  +     EY EN TTL     L+++ L KTL
Sbjct: 639 SYAGWELQSFGEDEAEELGFADLEYLENLTTLG-ITVLSLETL-KTL 683


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.132    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,413,786
Number of Sequences: 28952
Number of extensions: 370696
Number of successful extensions: 994
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 37
length of query: 424
length of database: 12,070,560
effective HSP length: 83
effective length of query: 341
effective length of database: 9,667,544
effective search space: 3296632504
effective search space used: 3296632504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)

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