Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001915-TA|BGIBMGA001915-PA|IPR000243|Peptidase T1A,
proteasome beta-subunit, IPR006593|Cytochrome b561 / ferric reductase
transmembrane, IPR001353|20S proteasome, A and B subunits
(424 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1) (... 213 1e-55
At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2) ... 116 4e-26
At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1) ... 114 1e-25
At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2) ... 106 2e-23
At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1) 105 6e-23
At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putativ... 101 7e-22
At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1) (... 101 1e-21
At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1) ... 90 2e-18
At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid t... 90 2e-18
At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2) ... 87 2e-17
At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2) ... 82 8e-16
At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1) ... 80 3e-15
At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1) (... 73 3e-13
At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1) (P... 47 2e-05
At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger) fa... 33 0.36
At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2) (... 33 0.48
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote... 32 0.63
At1g04650.1 68414.m00462 hypothetical protein 32 0.63
At1g72480.1 68414.m08381 expressed protein 31 1.9
At5g23540.1 68418.m02763 26S proteasome regulatory subunit, puta... 30 3.4
At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1) (P... 30 3.4
At5g47470.1 68418.m05862 nodulin MtN21 family protein integral m... 29 5.9
At4g26090.1 68417.m03756 disease resistance protein RPS2 (CC-NBS... 29 7.8
>At3g22110.1 68416.m02791 20S proteasome alpha subunit C (PAC1)
(PRC9) identical to GB:AAC32057 from [Arabidopsis
thaliana] (Genetics (1998) 149 (2), 677-692); identical
to cDNA proteasome subunit prc9 GI:2511583
Length = 250
Score = 213 bits (521), Expect = 1e-55
Identities = 108/209 (51%), Positives = 144/209 (68%), Gaps = 20/209 (9%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
GRLYQVEYAMEAI +AG+++GIL+ DG++L E++ T+KLL +EK+YK++D + C+
Sbjct: 16 GRLYQVEYAMEAIGNAGSAIGILSKDGVVLIGEKKVTSKLLQTSTSAEKMYKIDDHVACA 75
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305
VAGI SDAN+L N R+ AQRY Y E +P + RPFGVS L
Sbjct: 76 VAGIMSDANILINTARVQAQRYTFMYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFL 135
Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
+ GWDKH+G+QLY SDPSGNYGGWKA +G N+ AA S LKQ+YK+ + T EA LA+K
Sbjct: 136 FAGWDKHHGFQLYMSDPSGNYGGWKAAAVGANNQAAQSILKQDYKD-DATREEAVELALK 194
Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNKTI 394
VL+KT+D T LT EK+E+A + +KT+
Sbjct: 195 VLTKTMDSTSLTSEKLELAEVYLTPSKTV 223
>At3g14290.1 68416.m01808 20S proteasome alpha subunit E2 (PAE2)
identical to 20S proteasome subunit PAE2 GB:AAC32061
from [Arabidopsis thaliana]
Length = 237
Score = 116 bits (278), Expect = 4e-26
Identities = 72/202 (35%), Positives = 116/202 (57%), Gaps = 26/202 (12%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
GRL+QVEYA+EAI T++G+ +G++LA E+R T+ LL E EKI +++D + C+
Sbjct: 19 GRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLL-EPSSVEKIMEIDDHIGCA 77
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP--------C--------------KRPFGV 302
++G+ +DA L R+ Q + YGE + C RPFGV
Sbjct: 78 MSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGV 137
Query: 303 SILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL 362
S+L G D++ G LY +DPSG + A IG+ S A SSL++++ + + TL EA+ +
Sbjct: 138 SLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNK-DITLQEAETI 195
Query: 363 AIKVLSKTLDMTKLTPEKVEMA 384
A+ +L + ++ K+TP V++A
Sbjct: 196 AVSILKQVME-EKVTPNNVDIA 216
>At1g53850.1 68414.m06129 20S proteasome alpha subunit E1 (PAE1)
identical to 20S proteasome subunit PAE1 GI:3421087 from
[Arabidopsis thaliana]
Length = 237
Score = 114 bits (274), Expect = 1e-25
Identities = 71/202 (35%), Positives = 116/202 (57%), Gaps = 26/202 (12%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
GRL+QVEYA+EAI T++G+ +G++LA E+R T+ LL E EKI +++D + C+
Sbjct: 19 GRLFQVEYAIEAIKLGSTAIGVKTKEGVVLAVEKRITSPLL-EPSSVEKIMEIDDHIGCA 77
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP--------C--------------KRPFGV 302
++G+ +DA L R+ Q + YGE + C RPFGV
Sbjct: 78 MSGLIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGEEESMSRPFGV 137
Query: 303 SILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQAL 362
S+L G D++ G LY +DPSG + A IG+ S A SSL++++ + + +L EA+ +
Sbjct: 138 SLLIAGHDEN-GPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNK-DLSLQEAETI 195
Query: 363 AIKVLSKTLDMTKLTPEKVEMA 384
A+ +L + ++ K+TP V++A
Sbjct: 196 AVSILKQVME-EKVTPNNVDIA 216
>At5g66140.1 68418.m08332 20S proteasome alpha subunit D2 (PAD2)
(PRS1) (PRC6) identical to SP|O24616 Proteasome subunit
alpha type 7-2 (EC 3.4.25.1) (20S proteasome alpha
subunit D2) {Arabidopsis thaliana}
Length = 250
Score = 106 bits (255), Expect = 2e-23
Identities = 73/220 (33%), Positives = 119/220 (54%), Gaps = 28/220 (12%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
G L+QVEYA+EA+ ++G+ TD ++LA E+++T KL D + KI L++ + +
Sbjct: 15 GHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRS-ARKIVSLDNHIALA 73
Query: 265 VAGITSDANVLTNELRLIAQ------------RYLLQYGESIPCK-------RPFGVSIL 305
AG+ +DA VL N+ R+ Q Y+ +Y + K RPFG+S L
Sbjct: 74 CAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTL 133
Query: 306 YMGWDKHYGY-QLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAI 364
+G+D + LYQ+DPSG + WKA G NS + L++ YKE+ E LAI
Sbjct: 134 IVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKESSG--QETIKLAI 191
Query: 365 KVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVE 404
+ L L++ + + +E+A +TR++ T +R L E++
Sbjct: 192 RAL---LEVVESGGKNIEVAVMTREE--TGLRQLEEAEID 226
>At3g51260.1 68416.m05611 20S proteasome alpha subunit D (PAD1)
Length = 250
Score = 105 bits (252), Expect = 6e-23
Identities = 71/220 (32%), Positives = 119/220 (54%), Gaps = 28/220 (12%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
G L+QVEYA+EA+ ++G+ TD ++LA E+++T KL D + KI L++ + +
Sbjct: 15 GHLFQVEYALEAVRKGNAAVGVRGTDTVVLAVEKKSTPKLQDSRS-ARKIVSLDNHIALA 73
Query: 265 VAGITSDANVLTNELRLIAQ------------RYLLQYGESIPCK-------RPFGVSIL 305
AG+ +DA VL N+ R+ Q Y+ +Y + K RPFG+S L
Sbjct: 74 CAGLKADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTL 133
Query: 306 YMGWDKHYGYQ-LYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAI 364
+G+D + LYQ+DPSG + WKA G NS + L++ YKE+ E LAI
Sbjct: 134 IVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKESAG--QETVKLAI 191
Query: 365 KVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVE 404
+ L L++ + + +E+A +TR++ +++ L E++
Sbjct: 192 RAL---LEVVESGGKNIEVAVMTREEG--VLKQLEEEEID 226
>At1g79210.1 68414.m09235 20S proteasome alpha subunit B, putative
nearly identical to SP|O23708 Proteasome subunit alpha
type 2 (EC 3.4.25.1) (20S proteasome alpha subunit B)
{Arabidopsis thaliana} and to At1g16470
Length = 235
Score = 101 bits (243), Expect = 7e-22
Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 26/222 (11%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
G+L Q+E+A+ A+ TSLGI A++G+++A E++ + L+DE +KI L ++
Sbjct: 17 GKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASV-QKIQHLTPNIGTV 75
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305
+G+ D VL + R A++YL Y E IP RPFGVS+L
Sbjct: 76 YSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLL 135
Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
G+D G QLYQ DPSG+Y WKA+ +G N + A + L++ Y E + L +A AI
Sbjct: 136 VAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE-DMELDDAIHTAIL 193
Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
L + + +++ + +E+ + + R+LT E+++ L
Sbjct: 194 TLKEGFE-GEISSKNIEIGKI---GTDKVFRVLTPAEIDDYL 231
>At1g16470.1 68414.m01970 20S proteasome alpha subunit B (PAB1)
(PRC3) identical to proteasome subunit alpha type 2
SP:O23708, GI:6093778; identical to cDNA proteasome
subunit prc3 GI:2511573
Length = 235
Score = 101 bits (241), Expect = 1e-21
Identities = 72/222 (32%), Positives = 119/222 (53%), Gaps = 26/222 (11%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
G+L Q+E+A+ A+ TSLGI A++G+++A E++ + L+DE +KI L ++
Sbjct: 17 GKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPSILVDEASV-QKIQHLTPNIGVV 75
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305
+G+ D VL + R A++YL Y E IP RPFGVS+L
Sbjct: 76 YSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLL 135
Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
G+D G QLYQ DPSG+Y WKA+ +G N + A + L++ Y E + L +A AI
Sbjct: 136 VAGYDDK-GPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTE-DMELDDAIHTAIL 193
Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
L + + +++ + +E+ + + R+LT E+++ L
Sbjct: 194 TLKEGFE-GEISSKNIEIGKI---GADKVFRVLTPAEIDDYL 231
>At5g35590.1 68418.m04237 20S proteasome alpha subunit A1 (PAA1)
(PRC1) identical to proteasome subunit alpha type 6-1
SP:O81146 GI:12643647 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc1 GI:2511587
Length = 246
Score = 90.2 bits (214), Expect = 2e-18
Identities = 69/224 (30%), Positives = 107/224 (47%), Gaps = 25/224 (11%)
Query: 205 GRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVC 263
GRL+QVEYA +A+ AG TS+G+ D + + +++ +KLLD+ + ++ + +
Sbjct: 20 GRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTH-LFPITKYIGL 78
Query: 264 SVAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSI 304
GIT+DA L + R A + YG +P RP GV
Sbjct: 79 VATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVA 138
Query: 305 LYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENET-TLAEAQALA 363
+ MG D+ G LY+ DP+G++ G KAT G AV+ L+++ KEN + T E A
Sbjct: 139 MVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTA 198
Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
I L L ++E+ + R +N R LT E+E L
Sbjct: 199 ISALQSVL-QEDFKATEIEVG-VVRAENPE-FRALTTEEIEEHL 239
>At4g15160.1 68417.m02327 protease inhibitor/seed storage/lipid
transfer protein (LTP) family protein similar to
SP|Q00451|PRF1_LYCES 36.4 kDa proline-rich protein
Lycopersicon esculentum, proline-rich cell wall protein
[Medicago sativa] GI:3818416; contains Pfam profile
PF00234 Protease inhibitor/seed storage/LTP family
Length = 428
Score = 90.2 bits (214), Expect = 2e-18
Identities = 52/121 (42%), Positives = 73/121 (60%), Gaps = 5/121 (4%)
Query: 253 KIYKLNDDMVCSVAGITSDANVLTNELRLIAQRYLLQYGESIP--CKRPFGVSILYMGWD 310
K +L +V + + D VL E ++ ++ LLQ S+ K V+ GWD
Sbjct: 305 KFLQLLAMLVLPLEFLAKDGVVLVGEKKVTSK--LLQTSSSMEKMYKIDDHVACAVAGWD 362
Query: 311 KHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKT 370
+++G+QLY SDPSGNYGGW+A +G N+ AA S LKQ+YK+ + T E LAIKVLSKT
Sbjct: 363 RNHGFQLYMSDPSGNYGGWQAAAVGANNQAAQSILKQDYKD-DATREEVVQLAIKVLSKT 421
Query: 371 L 371
+
Sbjct: 422 M 422
Score = 45.2 bits (102), Expect = 8e-05
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 224 LGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAG 267
L LA DG++L E++ T+KLL EK+YK++D + C+VAG
Sbjct: 317 LEFLAKDGVVLVGEKKVTSKLLQTSSSMEKMYKIDDHVACAVAG 360
>At2g05840.1 68415.m00632 20S proteasome alpha subunit A2 (PAA2)
identical to GB:AF043519
Length = 246
Score = 87.0 bits (206), Expect = 2e-17
Identities = 65/224 (29%), Positives = 105/224 (46%), Gaps = 25/224 (11%)
Query: 205 GRLYQVEYAMEAISHAG-TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVC 263
GRL+QVEYA +A+ AG TS+G+ D + + +++ +KLLD+ S ++ + +
Sbjct: 20 GRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSH-LFPVTKYLGL 78
Query: 264 SVAGITSDANVLTNELRLIAQRYLLQYGESIPC-------------------KRPFGVSI 304
G+T+D+ L + R A + QYG +P RP GV
Sbjct: 79 LATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVA 138
Query: 305 LYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENET-TLAEAQALA 363
+ +G D+ G LY+ DP+G++ G KAT G AV+ L+++ KEN T E A
Sbjct: 139 MVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTA 198
Query: 364 IKVLSKTLDMTKLTPEKVEMATLTRKDNKTIIRILTNTEVENSL 407
I L L ++E+ + D + R L E++ L
Sbjct: 199 ISALQSVL-QEDFKATEIEVGVVRADD--PLFRSLRTEEIDEHL 239
>At1g47250.1 68414.m05231 20S proteasome alpha subunit F2 (PAF2)
(PRC2B) (PRS1) identical to GB:AAC32063 from
[Arabidopsis thaliana] (Genetics 149 (2), 677-692
(1998)); identical to cDNA proteasome subunit prc2b
GI:2511585
Length = 277
Score = 81.8 bits (193), Expect = 8e-16
Identities = 57/187 (30%), Positives = 99/187 (52%), Gaps = 24/187 (12%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
GRL+QVEYAMEA+ ++G+ + ++LA + ++L KI+K++D + +
Sbjct: 17 GRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSH---QRKIFKVDDHIGVA 73
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP--------------C-----KRPFGVSIL 305
+AG+T+D VL+ +R + + Y +P C KRP+GV +L
Sbjct: 74 IAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLL 133
Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKE-NETTLAEAQALAI 364
G D+ G LY + PSGNY ++A IG+ S AA + L+++++ E++ + AI
Sbjct: 134 VGGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAI 192
Query: 365 KVLSKTL 371
+ +TL
Sbjct: 193 MAIRETL 199
>At5g42790.1 68418.m05212 20S proteasome alpha subunit F1 (PAF1)
(gb|AAC32062.1)
Length = 278
Score = 79.8 bits (188), Expect = 3e-15
Identities = 52/165 (31%), Positives = 88/165 (53%), Gaps = 23/165 (13%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
GRL+QVEYAMEA+ ++G+ + ++LA + ++L KI+K++D + +
Sbjct: 17 GRLFQVEYAMEAVKQGSAAIGLRSRSHVVLACVNKAQSELSSH---QRKIFKVDDHIGVA 73
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIP--------------C-----KRPFGVSIL 305
+AG+T+D VL+ +R + + Y +P C KRP+GV +L
Sbjct: 74 IAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLL 133
Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYK 350
G D+ G LY + PSGNY ++A IG+ S AA + L++ ++
Sbjct: 134 VGGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFE 177
>At2g27020.1 68415.m03244 20S proteasome alpha subunit G (PAG1)
(PRC8) identical to proteasome subunit alpha type 3
SP:O23715, GI:12644056 from [Arabidopsis thaliana];
identical to cDNA proteasome subunit prc8 GI:2511591
Length = 249
Score = 73.3 bits (172), Expect = 3e-13
Identities = 53/207 (25%), Positives = 100/207 (48%), Gaps = 22/207 (10%)
Query: 205 GRLYQVEYAMEAISHAGTSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCS 264
GR++Q+EYA +A+ ++GT +GI DGI++ E+ +K++ + +I+ ++ +
Sbjct: 19 GRVFQIEYAAKAVDNSGTVVGIKCKDGIVMGVEKLIASKMM-LPGSNRRIHSVHRHAGMA 77
Query: 265 VAGITSDANVLTNELRLIAQRYLLQYGESIPCK-------------------RPFGVSIL 305
VAG+ +D + + A+ Y YG+++P K RPFG ++
Sbjct: 78 VAGLAADGRQIVARAKSEARSYESVYGDAVPVKELSERVASYVHLCTLYWWLRPFGCGVI 137
Query: 306 YMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIK 365
G+D+ G QLY +PSG + IG AA + + ++ +E T E K
Sbjct: 138 LGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGKQAAKTEI-EKLNLSEMTCKEGVIEVAK 195
Query: 366 VLSKTLDMTKLTPEKVEMATLTRKDNK 392
++ K D K ++EM+ + + +
Sbjct: 196 IIYKLHDEAKDKAFELEMSWICEESKR 222
>At4g31300.1 68417.m04441 20S proteasome beta subunit A (PBA1)
(PRCD) identical to cDNA proteasome subunit prcd
GI:2511593
Length = 233
Score = 47.2 bits (107), Expect = 2e-05
Identities = 36/161 (22%), Positives = 71/161 (44%), Gaps = 15/161 (9%)
Query: 222 TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDANVLTNELRL 281
T +G+ G++L A+ R + + S+KI +L D++ +G +D+ V+++ +R
Sbjct: 14 TIIGVTYNGGVVLGADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYVRY 73
Query: 282 IAQRYLLQYGESIPC--------------KRPFGVSILYMGWDKHYGYQLYQSDPSGNYG 327
++ +Q+G+ K ++ GWDK+ G ++Y G
Sbjct: 74 FLHQHTIQHGQPATVKVSANLIRMLAYNNKNMLQTGLIVGGWDKYEGGKIYGIPLGGTVV 133
Query: 328 GWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLS 368
G+ S+ Q +K+N T EA+ L +K +S
Sbjct: 134 EQPFAIGGSGSSYLYGFFDQAWKDN-MTKEEAEQLVVKAVS 173
>At1g03770.1 68414.m00357 zinc finger (C3HC4-type RING finger)
family protein low similarity to polycomb-M33
interacting protein Ring1B [Mus musculus] GI:2239142;
contains Pfam profile PF00097: Zinc finger, C3HC4 type
(RING finger)
Length = 427
Score = 33.1 bits (72), Expect = 0.36
Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 327 GGWKA-TCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMAT 385
GG ++ T GNN+ A+S K L + +++ +++ L KL E+VE+
Sbjct: 318 GGTRSNTRQGNNNQGAISKRNARLKRLVEYLGSLEGNSVEYVARHL---KLKAEEVEL-- 372
Query: 386 LTRKDNKTIIRILTNTEVENSLPNSKR-PKLKL 417
L KD T+I T+TE SL + + KLK+
Sbjct: 373 LVSKDGDTVIGNKTSTEKMQSLQDDETVAKLKV 405
>At4g14800.1 68417.m02275 20S proteasome beta subunit D2 (PBD2)
(PRCGA) identical to SP|O24633 Proteasome subunit beta
type 2-2 (EC 3.4.25.1) (20S proteasome alpha subunit D2)
{Arabidopsis thaliana}, cDNA proteasome subunit prcga
GI:2511571
Length = 199
Score = 32.7 bits (71), Expect = 0.48
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 297 KRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTL 356
K P+ V+IL G+DK G LY D G S ++S++ + Y+ ++ ++
Sbjct: 94 KNPYSVNILMAGYDKEAGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYR-SDMSV 152
Query: 357 AEAQALAIKVLSKTLDMTKLTP 378
EA L K + + + P
Sbjct: 153 EEAIELVDKCILEIRSRLVIAP 174
>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
kinase, putative
Length = 751
Score = 32.3 bits (70), Expect = 0.63
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 222 TSLGILATDGILLAAERRNTNKLLDEVFFSEKIYKLNDDMVCSVAGITSDAN 273
TSL L TDG+LL + R + ++D+ + + ++ +D+ CS G+T DA+
Sbjct: 27 TSLA-LTTDGVLLLSFRYS---IVDDPLYVFRSWRFDDETPCSWRGVTCDAS 74
>At1g04650.1 68414.m00462 hypothetical protein
Length = 936
Score = 32.3 bits (70), Expect = 0.63
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 367 LSKTLDMTKLTPEKVEMATLTRKDN--KTIIRILTNTEVENSLPNSKRPKLKLKLPETAC 424
L K + +TP + E+ L+++ K ++ L + S+ KRP K KLPE C
Sbjct: 821 LEKEQALLSITPSEEELELLSKEGTEVKATVQKLLEGRSQRSMEVEKRPNKKRKLPEGIC 880
>At1g72480.1 68414.m08381 expressed protein
Length = 509
Score = 30.7 bits (66), Expect = 1.9
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 39 ESGDLYNSSWDSAWRSICQLFNLLQHMQVAIVVFSLW 75
+S D+YN W +AW I F L + IV+ SLW
Sbjct: 407 KSKDVYNEHWQNAW--IIPAFWQLLSFSLLIVICSLW 441
>At5g23540.1 68418.m02763 26S proteasome regulatory subunit,
putative similar to 26S proteasome-associated pad1
homolog [Homo sapiens] GI:1923256, 26S proteasome,
non-ATPase subunit [Mus musculus] GI:2505940; contains
Pfam profile PF01398: Mov34/MPN/PAD-1 family
Length = 308
Score = 29.9 bits (64), Expect = 3.4
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 350 KENETTLAEAQALAIKVLSKTLDMTKLTPEKVEMATLTRKDNK 392
K NE T+ E +LA K + +L+PEK+ + + R+D K
Sbjct: 238 KTNEQTVQEMLSLAAKYNKAVQEEDELSPEKLAIVNVGRQDAK 280
>At3g22630.1 68416.m02857 20S proteasome beta subunit D (PBD1)
(PRGB) identical to GB:CAA74026 from [Arabidopsis
thaliana] ( FEBS Lett. (1997) 416 (3), 281-285);
identical to cDNA proteasome subunit prgb GI:2511589
Length = 204
Score = 29.9 bits (64), Expect = 3.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 297 KRPFGVSILYMGWDKHYGYQLYQSDPSGNYGGWKATCIGNNSAAAVSSLKQEYKENETTL 356
K P+ V+IL G+D G LY D G S ++S++ + Y+ ++ ++
Sbjct: 94 KNPYSVNILMAGYDDESGASLYYIDYIATLHKVDKGAFGYGSYFSLSTMDRHYR-SDMSV 152
Query: 357 AEAQALAIKVL 367
EA L K +
Sbjct: 153 EEAIELVDKCI 163
>At5g47470.1 68418.m05862 nodulin MtN21 family protein integral
membrane protein domain (PF00892); similar to MtN21
GI:2598575 (root nodule development) from [Medicago
truncatula]
Length = 364
Score = 29.1 bits (62), Expect = 5.9
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 125 DSKRIIHGCLQLIGALFVLAGTFLALAEVNMQINTAHGICGVIALAFTLVSFISGIIALF 184
D +++ GC+ L+GA+FVL+ + A + + + AL L++ + ++ L
Sbjct: 193 DRDKVV-GCIYLLGAVFVLSTNVVLQASTLAEFPAPISLSAITALLGVLITTV--VLLLQ 249
Query: 185 SSKVRLMVKS 194
+ K +++ S
Sbjct: 250 NRKTKVLASS 259
>At4g26090.1 68417.m03756 disease resistance protein RPS2
(CC-NBS-LRR class), putative domain signature CC-NBS-LRR
exists, suggestive of a disease resistance protein.
identical to RPS2 (gi:13661831)
Length = 909
Score = 28.7 bits (61), Expect = 7.8
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 325 NYGGWKATCIGNNSAAAVSSLKQEYKENETTLAEAQALAIKVLSKTL 371
+Y GW+ G + A + EY EN TTL L+++ L KTL
Sbjct: 639 SYAGWELQSFGEDEAEELGFADLEYLENLTTLG-ITVLSLETL-KTL 683
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.132 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,413,786
Number of Sequences: 28952
Number of extensions: 370696
Number of successful extensions: 994
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 940
Number of HSP's gapped (non-prelim): 37
length of query: 424
length of database: 12,070,560
effective HSP length: 83
effective length of query: 341
effective length of database: 9,667,544
effective search space: 3296632504
effective search space used: 3296632504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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