GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001914-TA|BGIBMGA001914-PA|IPR004877|Cytochrome b561,
IPR006593|Cytochrome b561 / ferric reductase transmembrane
         (237 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.2  
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr...    25   9.7  
SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    25   9.7  

>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 8/24 (33%), Positives = 17/24 (70%)

Query: 181 LLTVSVAFICLCLGFDTIYRIVMG 204
           ++ +SVAF C+ +G + ++ I+ G
Sbjct: 483 IMNISVAFTCIVMGLEVMFLILKG 506


>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 11/19 (57%), Positives = 14/19 (73%)

Query: 153 SLIGGVVNLIFPKQTSALI 171
           S IGG+ NLI+P+ T  LI
Sbjct: 49  SRIGGIKNLIYPEGTHFLI 67


>SPAPB1A10.07c |||sphingolipid biosynthesis
          protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 49 GAVAL-SAFIFANVFHGTNNLKQHIYLCVTGYVILMSQAILTFSPNNGWTNS 99
          G V + S+F+  +V   TN+++ ++   ++  V+    ++L++   + W NS
Sbjct: 17 GVVGIASSFLVTSVLSLTNSIQSNVGAVISYAVLYFVNSLLSWCMLSSWFNS 68


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.328    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 720,305
Number of Sequences: 5004
Number of extensions: 22578
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 4
length of query: 237
length of database: 2,362,478
effective HSP length: 71
effective length of query: 166
effective length of database: 2,007,194
effective search space: 333194204
effective search space used: 333194204
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 52 (25.0 bits)