GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001914-TA|BGIBMGA001914-PA|IPR004877|Cytochrome b561,
IPR006593|Cytochrome b561 / ferric reductase transmembrane
         (237 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0099 - 25816029-25816337,25816825-25817027,25817108-258171...    30   1.9  
09_02_0156 + 5070962-5072351,5072466-5073139                           28   7.6  
02_01_0453 + 3255106-3256062,3256140-3256301,3256394-3256762           28   7.6  

>02_05_0099 -
           25816029-25816337,25816825-25817027,25817108-25817156,
           25818274-25818417
          Length = 234

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 35/143 (24%), Positives = 52/143 (36%), Gaps = 13/143 (9%)

Query: 62  FHGTN-NL--KQHIYLCVTGYVILMSQAILTFSPNNGWTNSLKYPNKKMVHWVMQVXXXX 118
           F  TN NL    H  L + GY+IL S+AI+ +     W    K+   K++H ++      
Sbjct: 38  FEATNKNLIFNVHPVLMLIGYIILGSEAIMVYKVLPTW----KHDTTKLIHLILHAIALV 93

Query: 119 XXXXXXXXRFTNLNE----HMQXXXXXXXXXXXXXXXXSLIGGVVNLIFPKQTSALILRS 174
                    F   NE    ++                   I G V   FP+ + ++    
Sbjct: 94  FGAVGIYCAFKFHNESGIANLYSLHSWLGIGTICLYGIQWIFGFVAFFFPRASPSVRKGV 153

Query: 175 L--HACFGLLTVSVAFICLCLGF 195
           L  H  FGL    +A     LGF
Sbjct: 154 LPWHILFGLFVYILALATAELGF 176


>09_02_0156 + 5070962-5072351,5072466-5073139
          Length = 687

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 203 MGDVNANLSIAFTVMALIGVLSSAVSNLTRRYM 235
           +G  N NLS   + MA +G  S+A  + TR Y+
Sbjct: 273 LGSANRNLSSVLSEMAYVGFSSAAGRDNTRHYI 305


>02_01_0453 + 3255106-3256062,3256140-3256301,3256394-3256762
          Length = 495

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 55  AFIFANVFHGTNNLKQHIYLCVTG 78
           AF+ +N+F  T +  +H+YLC  G
Sbjct: 265 AFLCSNIFGSTADCVEHLYLCSGG 288


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.328    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,181,109
Number of Sequences: 37544
Number of extensions: 120728
Number of successful extensions: 322
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 320
Number of HSP's gapped (non-prelim): 3
length of query: 237
length of database: 14,793,348
effective HSP length: 80
effective length of query: 157
effective length of database: 11,789,828
effective search space: 1851002996
effective search space used: 1851002996
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)