GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001914-TA|BGIBMGA001914-PA|IPR004877|Cytochrome b561,
IPR006593|Cytochrome b561 / ferric reductase transmembrane
         (237 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21677| Best HMM Match : Cytochrom_B561 (HMM E-Value=0)              30   1.9  

>SB_21677| Best HMM Match : Cytochrom_B561 (HMM E-Value=0)
          Length = 246

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 31/129 (24%), Positives = 49/129 (37%), Gaps = 11/129 (8%)

Query: 71  HIYLCVTGYVILMSQAILTFSPNNGWTNSLKYPNKKMVHWVMQVXXXXXXXXXXXXRFTN 130
           H    V G V L S+A++ +     + N  KY   K+VH+ +Q+             F  
Sbjct: 56  HPVCMVIGLVYLYSEAMIVYRV---FRNETKY-TVKLVHFALQLVAFFVAVFGLKAAFDF 111

Query: 131 LNE----HMQXXXXXXXXXXXXXXXXSLIGGVVNLIFPKQTSA--LILRSLHACFGLLTV 184
            N+    +M                  L+GG V+ ++PK   A       +H  FG+  V
Sbjct: 112 HNKQGFPNMYSLHSWLGLCTVLLFTFQLVGGFVSFLYPKLPDAPRASYLKVHVFFGVF-V 170

Query: 185 SVAFICLCL 193
            V  +  CL
Sbjct: 171 FVLAVTTCL 179


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.328    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,904,819
Number of Sequences: 59808
Number of extensions: 143445
Number of successful extensions: 322
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 1
length of query: 237
length of database: 16,821,457
effective HSP length: 80
effective length of query: 157
effective length of database: 12,036,817
effective search space: 1889780269
effective search space used: 1889780269
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 59 (27.9 bits)