GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001914-TA|BGIBMGA001914-PA|IPR004877|Cytochrome b561,
IPR006593|Cytochrome b561 / ferric reductase transmembrane
         (237 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC047691-1|AAH47691.1|  222|Homo sapiens cytochrome b-561 domain...    39   0.018
AF040704-1|AAC70911.1|  222|Homo sapiens putative tumor suppress...    39   0.018
AC002481-2|AAB67309.1|  222|Homo sapiens WUGSC:H_LUCA12.2 protein.     39   0.018

>BC047691-1|AAH47691.1|  222|Homo sapiens cytochrome b-561 domain
           containing 2 protein.
          Length = 222

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 51  VALSAFIFANVFH--GTNNLKQHIYLCVTGYVILMSQAILTFSPNNGWTNSLKYPNKKMV 108
           VAL   IF  V    G++    H  L    +  LM++A+L FSP +   +SL    +   
Sbjct: 26  VALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARC 85

Query: 109 HWVMQV 114
           HWV+Q+
Sbjct: 86  HWVLQL 91


>AF040704-1|AAC70911.1|  222|Homo sapiens putative tumor suppressor
           protein protein.
          Length = 222

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 51  VALSAFIFANVFH--GTNNLKQHIYLCVTGYVILMSQAILTFSPNNGWTNSLKYPNKKMV 108
           VAL   IF  V    G++    H  L    +  LM++A+L FSP +   +SL    +   
Sbjct: 26  VALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARC 85

Query: 109 HWVMQV 114
           HWV+Q+
Sbjct: 86  HWVLQL 91


>AC002481-2|AAB67309.1|  222|Homo sapiens WUGSC:H_LUCA12.2 protein.
          Length = 222

 Score = 38.7 bits (86), Expect = 0.018
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 51  VALSAFIFANVFH--GTNNLKQHIYLCVTGYVILMSQAILTFSPNNGWTNSLKYPNKKMV 108
           VAL   IF  V    G++    H  L    +  LM++A+L FSP +   +SL    +   
Sbjct: 26  VALGFTIFVAVLARPGSSLFSWHPVLMSLAFSFLMTEALLVFSPESSLLHSLSRKGRARC 85

Query: 109 HWVMQV 114
           HWV+Q+
Sbjct: 86  HWVLQL 91


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.328    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,869,544
Number of Sequences: 224733
Number of extensions: 657837
Number of successful extensions: 4082
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4079
Number of HSP's gapped (non-prelim): 3
length of query: 237
length of database: 73,234,838
effective HSP length: 88
effective length of query: 149
effective length of database: 53,458,334
effective search space: 7965291766
effective search space used: 7965291766
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 64 (29.9 bits)