GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001914-TA|BGIBMGA001914-PA|IPR004877|Cytochrome b561,
IPR006593|Cytochrome b561 / ferric reductase transmembrane
         (237 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051967-1|AAK93391.1|  228|Drosophila melanogaster LD43293p pro...    58   1e-08
AE014134-3123|AAF53819.1|  228|Drosophila melanogaster CG10165-P...    58   1e-08
AE014134-3122|AAF53818.1|  228|Drosophila melanogaster CG10165-P...    58   1e-08
AY075529-1|AAL68336.1|  269|Drosophila melanogaster RH01238p pro...    36   0.065
AE014134-3134|AAF53830.1|  269|Drosophila melanogaster CG13077-P...    36   0.065

>AY051967-1|AAK93391.1|  228|Drosophila melanogaster LD43293p
           protein.
          Length = 228

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 51  VALSAFIFANVFHGTNNLKQHIYLCVTGYVILMSQAILTFSPNNGWTNSLKYPNKKMVHW 110
           VA+  FI A       +   H+++  TG+ +L++QA+++ S  N  T  L + NK   H 
Sbjct: 29  VAVFFFILARSLE-FKDTAMHMFMTGTGFHVLIAQAMMSHSKVNPLTRWLSHRNKSRFHA 87

Query: 111 VMQVXXXXXXXXXXXXRFTNLNEHMQXXXXXXXXXXXXXXXXSLIGGVVNLIFPKQTSAL 170
           ++Q+            +F++   H                  S++GG VN   PK    +
Sbjct: 88  ILQIVGGSMVLLGSLGKFSSKEVHFNTWHGRVGGAASFFCAASIVGGFVNYFQPKFALKV 147

Query: 171 I----LRSLHACFGLLTVSVAFICLCLGF 195
           +    LR  H  FGL+T S+    + LG+
Sbjct: 148 MPPSELRFRHNLFGLVTFSLGMGAIYLGY 176


>AE014134-3123|AAF53819.1|  228|Drosophila melanogaster CG10165-PB,
           isoform B protein.
          Length = 228

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 51  VALSAFIFANVFHGTNNLKQHIYLCVTGYVILMSQAILTFSPNNGWTNSLKYPNKKMVHW 110
           VA+  FI A       +   H+++  TG+ +L++QA+++ S  N  T  L + NK   H 
Sbjct: 29  VAVFFFILARSLE-FKDTAMHMFMTGTGFHVLIAQAMMSHSKVNPLTRWLSHRNKSRFHA 87

Query: 111 VMQVXXXXXXXXXXXXRFTNLNEHMQXXXXXXXXXXXXXXXXSLIGGVVNLIFPKQTSAL 170
           ++Q+            +F++   H                  S++GG VN   PK    +
Sbjct: 88  ILQIVGGSMVLLGSLGKFSSKEVHFNTWHGRVGGAASFFCAASIVGGFVNYFQPKFALKV 147

Query: 171 I----LRSLHACFGLLTVSVAFICLCLGF 195
           +    LR  H  FGL+T S+    + LG+
Sbjct: 148 MPPSELRFRHNLFGLVTFSLGMGAIYLGY 176


>AE014134-3122|AAF53818.1|  228|Drosophila melanogaster CG10165-PA,
           isoform A protein.
          Length = 228

 Score = 58.0 bits (134), Expect = 1e-08
 Identities = 38/149 (25%), Positives = 65/149 (43%), Gaps = 5/149 (3%)

Query: 51  VALSAFIFANVFHGTNNLKQHIYLCVTGYVILMSQAILTFSPNNGWTNSLKYPNKKMVHW 110
           VA+  FI A       +   H+++  TG+ +L++QA+++ S  N  T  L + NK   H 
Sbjct: 29  VAVFFFILARSLE-FKDTAMHMFMTGTGFHVLIAQAMMSHSKVNPLTRWLSHRNKSRFHA 87

Query: 111 VMQVXXXXXXXXXXXXRFTNLNEHMQXXXXXXXXXXXXXXXXSLIGGVVNLIFPKQTSAL 170
           ++Q+            +F++   H                  S++GG VN   PK    +
Sbjct: 88  ILQIVGGSMVLLGSLGKFSSKEVHFNTWHGRVGGAASFFCAASIVGGFVNYFQPKFALKV 147

Query: 171 I----LRSLHACFGLLTVSVAFICLCLGF 195
           +    LR  H  FGL+T S+    + LG+
Sbjct: 148 MPPSELRFRHNLFGLVTFSLGMGAIYLGY 176


>AY075529-1|AAL68336.1|  269|Drosophila melanogaster RH01238p
           protein.
          Length = 269

 Score = 35.5 bits (78), Expect = 0.065
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 5/176 (2%)

Query: 64  GTNNLKQHIYLCVTGYVILMSQAILTFSPNNGWTNSLKYPNKKMVHWVMQVXXXXXXXXX 123
           G +    H +L   G+   M++ ++     N  TN  K   K  +HWV+           
Sbjct: 88  GLSGTGLHAWLVTIGFSFFMAEGVMIHYGGNVLTNGYKRQTKTTIHWVLLTLGGGCGAAG 147

Query: 124 XXXRFTNLNEHMQXXXXXXXXXXXXXXXXSLIGGVVNLI---FPKQTSALILRSLHACFG 180
              +       +Q                ++  G+  L      K  + L+ ++ H   G
Sbjct: 148 ALIKMIQKGFLLQSTHGRLGMTAFVLCILAMSSGLAALFSSRIKKLITPLLNKTFHNFLG 207

Query: 181 LLTVSVAFICLCLGFDTIYRIVMGDVNANLSIAFTVMALIGVLSSAVSNLTRRYMK 236
                +A +    G+ T Y         +  I    + LI ++ S+   +   Y K
Sbjct: 208 FACFVIALVTQYYGYQTGY--FKSRSETDFQILMKCLTLISLVLSSYGPMKALYQK 261


>AE014134-3134|AAF53830.1|  269|Drosophila melanogaster CG13077-PA
           protein.
          Length = 269

 Score = 35.5 bits (78), Expect = 0.065
 Identities = 30/176 (17%), Positives = 57/176 (32%), Gaps = 5/176 (2%)

Query: 64  GTNNLKQHIYLCVTGYVILMSQAILTFSPNNGWTNSLKYPNKKMVHWVMQVXXXXXXXXX 123
           G +    H +L   G+   M++ ++     N  TN  K   K  +HWV+           
Sbjct: 88  GLSGTGLHAWLVTIGFSFFMAEGVMIHYGGNVLTNGYKRQTKTTIHWVLLTLGGGCGAAG 147

Query: 124 XXXRFTNLNEHMQXXXXXXXXXXXXXXXXSLIGGVVNLI---FPKQTSALILRSLHACFG 180
              +       +Q                ++  G+  L      K  + L+ ++ H   G
Sbjct: 148 ALIKMIQKGFLLQSTHGRLGMTAFVLCILAMSSGLAALFSSRIKKLITPLLNKTFHNFLG 207

Query: 181 LLTVSVAFICLCLGFDTIYRIVMGDVNANLSIAFTVMALIGVLSSAVSNLTRRYMK 236
                +A +    G+ T Y         +  I    + LI ++ S+   +   Y K
Sbjct: 208 FACFVIALVTQYYGYQTGY--FKSRSETDFQILMKCLTLISLVLSSYGPMKALYQK 261


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.328    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,287,044
Number of Sequences: 52641
Number of extensions: 217553
Number of successful extensions: 481
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 473
Number of HSP's gapped (non-prelim): 5
length of query: 237
length of database: 24,830,863
effective HSP length: 83
effective length of query: 154
effective length of database: 20,461,660
effective search space: 3151095640
effective search space used: 3151095640
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 60 (28.3 bits)