GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001914-TA|BGIBMGA001914-PA|IPR004877|Cytochrome b561,
IPR006593|Cytochrome b561 / ferric reductase transmembrane
         (237 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25570.1 68417.m03685 cytochrome B561 family protein contains...    28   6.4  

>At4g25570.1 68417.m03685 cytochrome B561 family protein contains
           Pfam domain, PF03188: Cytochrome b561
          Length = 239

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 71  HIYLCVTGYVILMSQAILTFSPNNGWTNSLKYPNKKMVHWVMQVXXXXXXXXXXXXRFTN 130
           H  L + G++IL  +AI+++      +  L+ P KK++H ++               F N
Sbjct: 50  HPVLMLIGFIILGGEAIISYK-----SLPLEKPVKKLIHLILHAIALALGIFGICAAFKN 104

Query: 131 LNE 133
            NE
Sbjct: 105 HNE 107


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.328    0.137    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,565,434
Number of Sequences: 28952
Number of extensions: 108670
Number of successful extensions: 241
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 1
length of query: 237
length of database: 12,070,560
effective HSP length: 79
effective length of query: 158
effective length of database: 9,783,352
effective search space: 1545769616
effective search space used: 1545769616
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 58 (27.5 bits)