GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001913-TA|BGIBMGA001913-PA|IPR010294|ADAM-TS Spacer 1,
IPR000884|Thrombospondin, type I
         (574 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    26   0.62 
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           25   1.9  
EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   5.8  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    23   7.6  

>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 26.2 bits (55), Expect = 0.62
 Identities = 16/63 (25%), Positives = 19/63 (30%)

Query: 430 CRGTKPETERDCGGDCSPSWYLSDWSECKGPCEAGVQSRTVWCARGGIEGANGAARDGEC 489
           C   KP   R+C        +    S    P   G  +R V C   G  G   A   G  
Sbjct: 878 CENGKPTCWRECDKATCEKLFRMKKSSALRPASGGTTARVVRCVCAGSTGTRRATGCGRV 937

Query: 490 PGV 492
             V
Sbjct: 938 ESV 940


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 13/30 (43%), Positives = 17/30 (56%)

Query: 320 SSERCNVPNCDGSVTTTALPRLDSRRQVRP 349
           S +  NVPN     T+TA+ R  +  QVRP
Sbjct: 27  SQQPRNVPNFAAPSTSTAVQRPQAILQVRP 56


>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
          peptide receptor 1 protein.
          Length = 374

 Score = 23.0 bits (47), Expect = 5.8
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 8  LLFVIFVTMVVGREGVL 24
          LL+V+FV +V G  GVL
Sbjct: 30 LLWVLFVIIVAGNVGVL 46


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
          vasopressin receptor protein.
          Length = 403

 Score = 22.6 bits (46), Expect = 7.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 1  MAGADLYLLFVIFVTMVVGREGVLASSSERELRCGSRLVSGLF 43
          +A  ++  L +IF+  V+G   VL +   R    G + +S ++
Sbjct: 34 LARVEVATLAIIFLVTVIGNSTVLLALWTRRRYAGRKKLSRMY 76


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,003
Number of Sequences: 317
Number of extensions: 5915
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 4
length of query: 574
length of database: 114,650
effective HSP length: 60
effective length of query: 514
effective length of database: 95,630
effective search space: 49153820
effective search space used: 49153820
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)