GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001913-TA|BGIBMGA001913-PA|IPR010294|ADAM-TS Spacer 1,
IPR000884|Thrombospondin, type I
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyce...    28   3.1  
SPCC1393.14 |||nuclear telomere cap complex subunit Ten1|Schizos...    27   5.3  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    27   7.1  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    27   7.1  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   9.3  

>SPBC530.04 |mod5||Tea1 anchoring protein Mod5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 490 PGVRP--PAKKMCVPARCTSKPVINPNVISPPAVSDPQQRVTRHQINTPPHI 539
           P V P  P      P    S P +      PPA    Q  ++ H+   PPH+
Sbjct: 429 PQVSPKRPTYSRSSPLPSASVPALGDGSPDPPAAPSIQNSLSVHESEMPPHV 480


>SPCC1393.14 |||nuclear telomere cap complex subunit
           Ten1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 102

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 286 CGPAHRTRIVGCVQDHARGIIKISD 310
           C    + R +GCVQ +  GI+++ D
Sbjct: 15  CKDGQKLRFLGCVQSYKNGILRLID 39


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 84  GTYIINGEFAVSAPGTYDVAGARFLYTRTASLDGIFAVGPIHKPIDIMILY-TQPNPN 140
           GT++    +A  A     +  +R +Y  T    G+   GP H+PI+    +   PN N
Sbjct: 443 GTFLNFVSYAAGAVRMAALNNSRVIYVATHDSIGLGEDGPTHQPIETFAHFRAMPNIN 500


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 386 GGGWLYTEWSEASEWSKCSAGCGGRQVRGVICIGGNGR 423
           GGG L  EW++    S   +  GGR+ RG    G +GR
Sbjct: 75  GGGVLRVEWAKQPPPSGPGSKRGGRRERGGRVHGDSGR 112


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)

Query: 490 PGVRPPAKKMCVPARCTSKPVINPNVIS------PPAVSDPQ 525
           P + P  + +C+P R ++KP I   + S      PP+ SD Q
Sbjct: 415 PPILPVGESVCLPPRTSAKPRIAEGIASLLNPEEPPSNSDKQ 456


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.135    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,549,573
Number of Sequences: 5004
Number of extensions: 104120
Number of successful extensions: 205
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 7
length of query: 574
length of database: 2,362,478
effective HSP length: 77
effective length of query: 497
effective length of database: 1,977,170
effective search space: 982653490
effective search space used: 982653490
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)