Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001913-TA|BGIBMGA001913-PA|IPR010294|ADAM-TS Spacer 1,
IPR000884|Thrombospondin, type I
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0512 + 29675835-29675901,29676681-29676813,29677020-296771... 34 0.35
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 33 0.47
01_05_0671 - 24164490-24164544,24164920-24165086,24165787-241659... 32 1.1
09_02_0167 + 5221910-5222516,5222826-5224642 32 1.4
05_05_0098 + 22373384-22373522,22373566-22373772,22373879-223739... 31 2.5
11_01_0125 + 1018059-1018403 31 3.3
06_01_0912 - 7036420-7037503,7037599-7037819 30 5.8
01_06_1310 - 36176008-36176472,36176547-36176774,36177313-361780... 30 5.8
10_08_0491 - 18283404-18283482,18283590-18283658,18283767-182838... 29 7.6
08_02_0110 + 12650328-12650552,12650827-12651423,12651480-126518... 29 7.6
07_01_0862 - 7172083-7172931 29 7.6
>02_05_0512 +
29675835-29675901,29676681-29676813,29677020-29677164,
29677586-29678407
Length = 388
Score = 33.9 bits (74), Expect = 0.35
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 13/76 (17%)
Query: 444 DCSPSWYLSD-----WSECKGPCEAGVQ-SRTVWCARGGIEGANGAARD------GECPG 491
DC+ SW+ +D WS + C G + R+ W R GI+ GAA D G+
Sbjct: 145 DCTSSWWNADRSPPWWSPSRWCCPRGSRIPRSPWQIRAGID-KQGAAADAGELLSGQVKA 203
Query: 492 VRPPAKKMCVPARCTS 507
VR P + C R TS
Sbjct: 204 VRKPWRSRCRRRRGTS 219
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 33.5 bits (73), Expect = 0.47
Identities = 31/109 (28%), Positives = 41/109 (37%), Gaps = 9/109 (8%)
Query: 300 DHARGIIKISDQKCPLPMPPS-SERCNVPNCDGSVTTTALPRLDSRRQVRPKDRT----- 353
+H G +D C P S +E C P DG + L + PKD T
Sbjct: 741 EHGTGEGSCTDATCGSPTVISCNESC--PEEDGQGSNALLHHKQTEPPKDPKDHTASTNN 798
Query: 354 DHF-REGPVITLATNLTDNEITSTPPTSYSFSAGGGWLYTEWSEASEWS 401
H +EG + LT E + S+SF G TE + A WS
Sbjct: 799 SHVSKEGSSRNVKPTLTSEETHTAEDKSFSFEVGAPLNITEKAHAPAWS 847
>01_05_0671 -
24164490-24164544,24164920-24165086,24165787-24165941,
24166291-24166458,24167471-24167552
Length = 208
Score = 32.3 bits (70), Expect = 1.1
Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
Query: 449 WYLSDWSECKGPCEAGVQSRTVWCARGGIEGA---NGAARDGECPGVRPPAKK 498
W W +C PC+ GV+ R V C G + A + D C PA++
Sbjct: 88 WVAGPWMKCSSPCDGGVRYRDVAC-YGNLSDATIKHYPVDDASCSADEMPARQ 139
>09_02_0167 + 5221910-5222516,5222826-5224642
Length = 807
Score = 31.9 bits (69), Expect = 1.4
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 38 LVSGLFSKPRLPLGYSYVTTVPRGACRLNVTEVV 71
+VS LF+ L L Y+ V +PR CRLN +++
Sbjct: 494 VVSNLFNLRYLDLAYTRVKVIPRSLCRLNKLQML 527
>05_05_0098 +
22373384-22373522,22373566-22373772,22373879-22373953,
22374611-22374744,22375189-22375674,22375854-22376621,
22377367-22377594,22378294-22378773
Length = 838
Score = 31.1 bits (67), Expect = 2.5
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 39 VSGLFSKPRLPLGYSYVTTVPRGACRLNVTEVVPSENYIALKE 81
V+G F + PL VT VPRG L + VP+EN + KE
Sbjct: 622 VAGWFLEHAEPL--LKVTIVPRGTAALGFAQYVPNENLLMTKE 662
>11_01_0125 + 1018059-1018403
Length = 114
Score = 30.7 bits (66), Expect = 3.3
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 397 ASEWSKCSAGC-GGRQVRGVICIGGNGRRLRDSACRGTKPETERD 440
+S W +AG GG + GV +GG R R +A RG + + RD
Sbjct: 38 SSAWKVSAAGIDGGEEQLGVEGVGGRDRWRRGAARRGRRRQRPRD 82
>06_01_0912 - 7036420-7037503,7037599-7037819
Length = 434
Score = 29.9 bits (64), Expect = 5.8
Identities = 25/71 (35%), Positives = 30/71 (42%), Gaps = 10/71 (14%)
Query: 395 SEASEWSKCSAGCG---GRQVRGVICIGGNGRRLRDSACRGTKPETERDCGGDCSPSWYL 451
S E S +A C GR VR G+ RR +AC KPE +DC G+ P
Sbjct: 73 SGVEERSSAAASCDYSVGRWVRAP----GHARRYNGTACN-VKPE--QDCVGNGRPETGY 125
Query: 452 SDWSECKGPCE 462
DW CE
Sbjct: 126 LDWRWQPASCE 136
>01_06_1310 -
36176008-36176472,36176547-36176774,36177313-36178080,
36178250-36178732,36179883-36180010,36180539-36180607,
36180688-36180892,36181005-36181067
Length = 802
Score = 29.9 bits (64), Expect = 5.8
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 39 VSGLFSKPRLPLGYSYVTTVPRGACRLNVTEVVPSENYIALKE 81
V+G F + PL VT VPRG L + VP++N + KE
Sbjct: 591 VAGWFLEHAEPL--LKVTIVPRGTAALGFAQYVPNDNLLMTKE 631
>10_08_0491 -
18283404-18283482,18283590-18283658,18283767-18283883,
18283953-18284068,18284149-18284223,18284248-18284430,
18284530-18284591,18284668-18285606,18285723-18285846,
18285917-18286060,18286151-18286225,18286359-18286382,
18287025-18287095,18287305-18287407,18287555-18287781,
18287910-18288027,18288220-18288311,18288793-18288874
Length = 899
Score = 29.5 bits (63), Expect = 7.6
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 504 RCTSKPVINPNVISPPAVSDPQQRVTRHQIN-TPPHIRDR 542
R S PV++P V P SD Q+R T + + T P IR +
Sbjct: 398 RSDSLPVVSPRVRLNPKFSDDQKRQTDYAVPITTPRIRSK 437
>08_02_0110 +
12650328-12650552,12650827-12651423,12651480-12651857,
12651997-12652218,12652407-12652483,12652553-12652631,
12652920-12653105
Length = 587
Score = 29.5 bits (63), Expect = 7.6
Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 490 PGVRPPAKKMCVPA-RCTSKPVINPNVISPPAVSDP 524
PG PP VP + S PV+ P V SP DP
Sbjct: 240 PGPEPPVASPPVPEPQVASPPVLEPPVASPQTEKDP 275
>07_01_0862 - 7172083-7172931
Length = 282
Score = 29.5 bits (63), Expect = 7.6
Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 6/92 (6%)
Query: 436 ETERDCGGDCSPSWYLSDWS-ECKGPCEAGVQSRTVWCARGGIEGANGAARDGECPGVRP 494
E ER G W W+ E + P E G R VW A AA D C +R
Sbjct: 56 EVERRFTGVRRRPW--GRWAAEIRDPKENG---RRVWLGTFDTAEAAAAAYDDACLRLRG 110
Query: 495 PAKKMCVPARCTSKPVINPNVISPPAVSDPQQ 526
P + +P+R P P PP ++ ++
Sbjct: 111 PGAALNLPSRRCVAPAPPPPPPPPPPTAEEKK 142
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,611,816
Number of Sequences: 37544
Number of extensions: 874410
Number of successful extensions: 2095
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 2088
Number of HSP's gapped (non-prelim): 14
length of query: 574
length of database: 14,793,348
effective HSP length: 86
effective length of query: 488
effective length of database: 11,564,564
effective search space: 5643507232
effective search space used: 5643507232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 63 (29.5 bits)
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