GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001913-TA|BGIBMGA001913-PA|IPR010294|ADAM-TS Spacer 1,
IPR000884|Thrombospondin, type I
         (574 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   1.3  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   9.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   9.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 5/71 (7%)

Query: 319 PSSERCNVPNCDGSVTTTALPRLDSRRQVR---PKDRTDHFREGPVITLATNLTDNEITS 375
           P+S +   P  +    TT  P + SR++ +    K+  DH        + TN+T     +
Sbjct: 783 PNSTKETTPKKERKTATTTQPVISSRKEQKKSEEKNINDHCVTTEQSVVVTNVTTT--IN 840

Query: 376 TPPTSYSFSAG 386
           TP TS    +G
Sbjct: 841 TPTTSVISMSG 851


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 90  GEFAVSAPGTYDVAGARFLYTRTASLDGIFA 120
           G  A ++  TY V+G R+ Y   A++  + A
Sbjct: 234 GWLAFNSGSTYGVSGQRWQYAARAAISTMLA 264


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.6 bits (46), Expect = 9.1
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 308 ISDQKCPLPMPPSSERCNVPNCD 330
           + D + P P+PP+    N+   D
Sbjct: 646 LKDGQSPFPLPPNLASANISQLD 668


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,963
Number of Sequences: 429
Number of extensions: 7341
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 3
length of query: 574
length of database: 140,377
effective HSP length: 61
effective length of query: 513
effective length of database: 114,208
effective search space: 58588704
effective search space used: 58588704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)