Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001913-TA|BGIBMGA001913-PA|IPR010294|ADAM-TS Spacer 1,
IPR000884|Thrombospondin, type I
(574 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g07510.1 68414.m00804 FtsH protease, putative similar to AAA-... 31 2.1
At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein ... 31 2.7
At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein ... 31 2.7
At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein ... 31 2.7
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen... 30 3.6
At2g29080.1 68415.m03535 FtsH protease, putative similar to AAA-... 30 3.6
At5g56890.1 68418.m07099 protein kinase family protein contains ... 29 8.4
At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing ... 29 8.4
At2g22660.1 68415.m02685 glycine-rich protein 29 8.4
>At1g07510.1 68414.m00804 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 813
Score = 31.1 bits (67), Expect = 2.1
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 39 VSGLFSKPRLPLGYSYVTTVPRGACRLNVTEVVPSENYIALKE 81
V+G F + PL VT VPRG L + VP+EN + KE
Sbjct: 598 VAGWFLEHAEPL--LKVTIVPRGTAALGFAQYVPNENLLMTKE 638
>At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 365
Score = 30.7 bits (66), Expect = 2.7
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 55 VTTVPRGACRLNVTEVVPSENYIALKESNGTYIIN----GEFAVSAPGTY 100
V V RGA ++N E+ + N +A K + GT I+ G F VS G Y
Sbjct: 240 VVPVIRGADKMNFAEIEKTINSLAKKANEGTISIDEMAGGSFTVSNGGVY 289
>At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 463
Score = 30.7 bits (66), Expect = 2.7
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 55 VTTVPRGACRLNVTEVVPSENYIALKESNGTYIIN----GEFAVSAPGTY 100
V V RGA ++N E+ + N +A K + GT I+ G F VS G Y
Sbjct: 338 VVPVIRGADKMNFAEIEKTINSLAKKANEGTISIDEMAGGSFTVSNGGVY 387
>At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 464
Score = 30.7 bits (66), Expect = 2.7
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 55 VTTVPRGACRLNVTEVVPSENYIALKESNGTYIIN----GEFAVSAPGTY 100
V V RGA ++N E+ + N +A K + GT I+ G F VS G Y
Sbjct: 339 VVPVIRGADKMNFAEIEKTINSLAKKANEGTISIDEMAGGSFTVSNGGVY 388
>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
for histone protein GB:X15142 GI:3204 [Physarum
polycephalum]
Length = 614
Score = 30.3 bits (65), Expect = 3.6
Identities = 26/93 (27%), Positives = 32/93 (34%), Gaps = 2/93 (2%)
Query: 395 SEASEWSKCSAGCGGRQVRGVICIGGNGRRLRDSACRGTKPETERDCGGDCSPSWYLSDW 454
S A S SA GG G GG+ +SA G + GG+ S
Sbjct: 288 SGAGAASGASAKTGGES--GEAASGGSAETGGESASAGAASGGSAETGGESGSGGAASGG 345
Query: 455 SECKGPCEAGVQSRTVWCARGGIEGANGAARDG 487
G +G T A G E A+G A G
Sbjct: 346 ESASGGATSGGSPETGGSAETGGESASGGAASG 378
Score = 29.5 bits (63), Expect = 6.3
Identities = 32/119 (26%), Positives = 39/119 (32%), Gaps = 5/119 (4%)
Query: 369 TDNEITSTPPTSYSFSAGGGWLYTEWSEASEWSKCSAGCGGRQVRGVICIGGNGRRLRDS 428
T E S S + +A G T S SA GG GG+ +S
Sbjct: 277 TGGESASGGAASGAGAASGASAKTGGESGEAASGGSAETGGESASAGAASGGSAETGGES 336
Query: 429 ACRGTKPETERDCGGDCSPSWYLSDWSECKGPCEAGVQSRTVWCARGGIEGANGAARDG 487
G E GG S E G E G +S + A GG + GAA G
Sbjct: 337 GSGGAASGGESASGGATS-----GGSPETGGSAETGGESASGGAASGGESASGGAASSG 390
>At2g29080.1 68415.m03535 FtsH protease, putative similar to
AAA-metalloprotease FtsH [Pisum sativum] GI:15021761;
contains Pfam profiles PF01434: Peptidase family M41,
PF00004: ATPase AAA family
Length = 809
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 55 VTTVPRGACRLNVTEVVPSENYIALKE 81
VT VPRG L + VP+EN + KE
Sbjct: 606 VTIVPRGTAALGFAQYVPNENLLMTKE 632
>At5g56890.1 68418.m07099 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 1113
Score = 29.1 bits (62), Expect = 8.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 502 PARCTSKPV-INPNVISPPAVSDPQQRVTRHQINTPP 537
PA T+KP+ + P+ SPP+++ + RH +T P
Sbjct: 282 PANETAKPLPVFPHKASPPSIAPSAPKFNRHSHHTSP 318
>At3g45630.1 68416.m04928 RNA recognition motif (RRM)-containing
protein similar to SP|P34909 General negative regulator
of transcription subunit 4 {Saccharomyces cerevisiae};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 989
Score = 29.1 bits (62), Expect = 8.4
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 460 PCEAGVQSRTVWCARGGIEGANGAARDGECPGVRPPAKK 498
PC+ G Q VWC ++ A +G CP R P K
Sbjct: 25 PCKCGYQI-CVWCWHHIMDMAEKDQSEGRCPACRTPYDK 62
>At2g22660.1 68415.m02685 glycine-rich protein
Length = 819
Score = 29.1 bits (62), Expect = 8.4
Identities = 18/61 (29%), Positives = 21/61 (34%)
Query: 401 SKCSAGCGGRQVRGVICIGGNGRRLRDSACRGTKPETERDCGGDCSPSWYLSDWSECKGP 460
S CS CG GG G R + + G CGG C + S C G
Sbjct: 748 SGCSGECGNMVKAANASGGGYGARCKAAKASGCGGGCGGGCGGGCGDMVKSVNASGCGGG 807
Query: 461 C 461
C
Sbjct: 808 C 808
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.135 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,096,089
Number of Sequences: 28952
Number of extensions: 617267
Number of successful extensions: 1328
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 14
length of query: 574
length of database: 12,070,560
effective HSP length: 85
effective length of query: 489
effective length of database: 9,609,640
effective search space: 4699113960
effective search space used: 4699113960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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