Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001912-TA|BGIBMGA001912-PA|undefined
         (104 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC048285-1|AAH48285.1|  475|Homo sapiens solute carrier family 4...    34   0.091
AL139041-1|CAI95196.1|  475|Homo sapiens thymic stromal co-trans...    34   0.091
AF242557-1|AAK28343.1|  475|Homo sapiens thymic stromal co-trans...    34   0.091
AK055571-1|BAB70960.1|  475|Homo sapiens protein ( Homo sapiens ...    33   0.16 
BC036205-1|AAH36205.1|  723|Homo sapiens transmembrane channel-l...    28   4.5  
AY263165-1|AAP78780.1|  723|Homo sapiens TMC7 protein protein.         28   4.5  
AB065781-1|BAC06001.1|  313|Homo sapiens seven transmembrane hel...    28   6.0  

>BC048285-1|AAH48285.1|  475|Homo sapiens solute carrier family 46,
           member 2 protein.
          Length = 475

 Score = 33.9 bits (74), Expect = 0.091
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 13  IDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVY 72
           + Y +   Y++F   I SF+ + +FS+   F D+ + +I   S    +++ A      ++
Sbjct: 320 VGYGMAAGYTIF---ITSFLGVLVFSRC--FRDTTMIMIGMVSFGSGALLLAFVKETYMF 374

Query: 73  FLGPVLDMFSSAGATSLRSLASKLVDSDEVG 103
           ++   + +F+    T++RS  SKL+     G
Sbjct: 375 YIARAVMLFALIPVTTIRSAMSKLIKGSSYG 405


>AL139041-1|CAI95196.1|  475|Homo sapiens thymic stromal
           co-transporter protein.
          Length = 475

 Score = 33.9 bits (74), Expect = 0.091
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 13  IDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVY 72
           + Y +   Y++F   I SF+ + +FS+   F D+ + +I   S    +++ A      ++
Sbjct: 320 VGYGMAAGYTIF---ITSFLGVLVFSRC--FRDTTMIMIGMVSFGSGALLLAFVKETYMF 374

Query: 73  FLGPVLDMFSSAGATSLRSLASKLVDSDEVG 103
           ++   + +F+    T++RS  SKL+     G
Sbjct: 375 YIARAVMLFALIPVTTIRSAMSKLIKGSSYG 405


>AF242557-1|AAK28343.1|  475|Homo sapiens thymic stromal
           co-transporter protein.
          Length = 475

 Score = 33.9 bits (74), Expect = 0.091
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 13  IDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVY 72
           + Y +   Y++F   I SF+ + +FS+   F D+ + +I   S    +++ A      ++
Sbjct: 320 VGYGMAAGYTIF---ITSFLGVLVFSRC--FRDTTMIMIGMVSFGSGALLLAFVKETYMF 374

Query: 73  FLGPVLDMFSSAGATSLRSLASKLVDSDEVG 103
           ++   + +F+    T++RS  SKL+     G
Sbjct: 375 YIARAVMLFALIPVTTIRSAMSKLIKGSSYG 405


>AK055571-1|BAB70960.1|  475|Homo sapiens protein ( Homo sapiens
           cDNA FLJ31009 fis, clone HLUNG2000142, moderately
           similar to Mus musculus putative thymic stromal
           co-transporter TSCOT mRNA. ).
          Length = 475

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 5/91 (5%)

Query: 13  IDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVY 72
           + Y +   Y++F   I SF+ + +FS+   F D+ + +I   S    +++ A      ++
Sbjct: 320 VGYGMAAGYTIF---ITSFLGVLVFSRC--FRDTTMIMIGMVSFGSGALLLAFVKETYMF 374

Query: 73  FLGPVLDMFSSAGATSLRSLASKLVDSDEVG 103
           ++     +F+    T++RS  SKL+     G
Sbjct: 375 YIARAAMLFALIPVTTIRSAMSKLIKGSSYG 405


>BC036205-1|AAH36205.1|  723|Homo sapiens transmembrane channel-like
           7 protein.
          Length = 723

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 10  FTDIDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNR 69
           F+ + + + L   +F+ II   + + +   ++K  +S   +I          VY V+ + 
Sbjct: 164 FSFLRFLVLLNLVIFL-IIFMLVLLPVLLTKYKITNSSFVLIPFKDMDKQCTVYPVSSSG 222

Query: 70  TVYFLGPVLDMFSSAGATSLRSLASKLVDSDEVGF 104
            +YF   ++D+ S  G     SL       DEV F
Sbjct: 223 LIYFYSYIIDLLSGTGFLEETSLFYGHYTIDEVKF 257


>AY263165-1|AAP78780.1|  723|Homo sapiens TMC7 protein protein.
          Length = 723

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 10  FTDIDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNR 69
           F+ + + + L   +F+ II   + + +   ++K  +S   +I          VY V+ + 
Sbjct: 164 FSFLRFLVLLNLVIFL-IIFMLVLLPVLLTKYKITNSSFVLIPFKDMDKQCTVYPVSSSG 222

Query: 70  TVYFLGPVLDMFSSAGATSLRSLASKLVDSDEVGF 104
            +YF   ++D+ S  G     SL       DEV F
Sbjct: 223 LIYFYSYIIDLLSGTGFLEETSLFYGHYTIDEVKF 257


>AB065781-1|BAC06001.1|  313|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 8/75 (10%)

Query: 15  YSLFLA-YSVFV-GIIGSFITIYLFSK----RWKFEDSMIGVIACFSRILAS--IVYAVA 66
           + +FLA Y+V V G IG  + I +  K     + F   +  V  C+S I+A   +V  V 
Sbjct: 29  FLVFLAIYNVTVLGNIGLIVIIKINPKLHTPMYFFLSQLSFVDFCYSSIIAPKMLVNLVV 88

Query: 67  PNRTVYFLGPVLDMF 81
            +RT+ FLG V+  F
Sbjct: 89  KDRTISFLGCVVQFF 103


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.330    0.142    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,032,074
Number of Sequences: 224733
Number of extensions: 466616
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 7
length of query: 104
length of database: 73,234,838
effective HSP length: 78
effective length of query: 26
effective length of database: 55,705,664
effective search space: 1448347264
effective search space used: 1448347264
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 58 (27.5 bits)