Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001912-TA|BGIBMGA001912-PA|undefined
(104 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711... 29 0.52
01_01_1214 - 9793854-9794003,9795418-9795456,9795604-9795702,979... 29 0.52
09_02_0430 - 9313768-9314259,9314347-9315299,9316875-9317022 29 0.91
12_01_0918 + 9072774-9072863,9073385-9073539,9073834-9074213,907... 26 4.9
05_06_0150 - 25994562-25995980 25 8.5
04_01_0175 - 1972361-1972429,1973185-1973334,1974956-1975105,197... 25 8.5
01_06_0517 + 29981537-29981927,29982024-29982231,29982373-299825... 25 8.5
01_01_0091 - 719842-720902,721042-721071,721521-722226 25 8.5
>03_05_0328 -
23170019-23170168,23170865-23170903,23171043-23171141,
23171214-23171342,23171915-23172061,23172959-23173089,
23173938-23174157,23174294-23174387,23174469-23174581,
23174727-23174861,23175231-23175335,23175440-23175544,
23176240-23176327,23176415-23176536,23176611-23176670,
23177434-23177529,23177620-23177772,23177865-23177951,
23179179-23179246,23179603-23179726,23180235-23180330,
23180430-23180539,23180647-23180761,23181622-23181699,
23181843-23181908,23182203-23182363,23182781-23183099
Length = 1069
Score = 29.5 bits (63), Expect = 0.52
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 2 LFTRYKHKFTDIDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASI 61
L R+K F + Y ++G++ F T L S +W +S+ +++ +SR++ S+
Sbjct: 370 LLGRFKVNFQLSELLSIEFYGEWIGLVAEFTTKSLLSWQWA-SNSVYYLLSLWSRLVTSV 428
Query: 62 VY 63
Y
Sbjct: 429 PY 430
>01_01_1214 -
9793854-9794003,9795418-9795456,9795604-9795702,
9795779-9795907,9796473-9796619,9797513-9797643,
9798497-9798716,9798858-9798951,9799021-9799133,
9799799-9799903,9800008-9800112,9800762-9800849,
9800933-9801054,9801130-9801189,9802313-9802408,
9802506-9802658,9802752-9802838,9803995-9804062,
9804429-9804552,9805057-9805152,9805250-9805359,
9805459-9805573,9806877-9806942,9807260-9807420,
9807927-9808167
Length = 972
Score = 29.5 bits (63), Expect = 0.52
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 2 LFTRYKHKFTDIDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASI 61
L R+K F + Y ++G++ F T L S +W +S+ +++ +SR++ S+
Sbjct: 318 LLGRFKVNFQLSELLSIEFYGEWIGLVAEFTTKSLLSWQWA-SNSVYYLLSLWSRLVTSV 376
Query: 62 VY 63
Y
Sbjct: 377 PY 378
>09_02_0430 - 9313768-9314259,9314347-9315299,9316875-9317022
Length = 530
Score = 28.7 bits (61), Expect = 0.91
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 9 KFTDIDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPN 68
K+ + +LF + F G++ +F +L +R + M+G ++ F L V A A N
Sbjct: 81 KYDNQVLTLFTSSLYFAGLVSTFAASHLTRRRGRRATIMVGAVSFF---LGGAVNAAAAN 137
Query: 69 RTVYFLGPVL 78
+ G +L
Sbjct: 138 VAMLIAGRLL 147
>12_01_0918 +
9072774-9072863,9073385-9073539,9073834-9074213,
9074299-9075273,9076001-9076134
Length = 577
Score = 26.2 bits (55), Expect = 4.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 27 IIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTV 71
II + + LF K K +++G AC+++ + V V+P +TV
Sbjct: 225 IINAGMNTPLFFKVAKHRLTVVGADACYTKPYKTDVVVVSPGQTV 269
>05_06_0150 - 25994562-25995980
Length = 472
Score = 25.4 bits (53), Expect = 8.5
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 57 ILASIVYAVAPNRTVYFLGPVLDMFSSAGATSLRSLASKLVDS 99
+ A + P + VYF+GP++D G+ + R +D+
Sbjct: 220 LAAGVCVPNEPKQRVYFIGPLVDARKKVGSGAERHACLAWLDA 262
>04_01_0175 -
1972361-1972429,1973185-1973334,1974956-1975105,
1975370-1975417,1975717-1975793,1975897-1975999,
1977103-1977233,1978793-1978970,1980656-1980676,
1981233-1981290,1981381-1981444,1982261-1982431,
1982526-1982637,1982779-1983021,1983783-1983964,
1984785-1984920
Length = 630
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 38 SKRWKFEDSMIGVIACFSRILASIVYAVAPNRT---VYFLGPV 77
+K + ED + G + F R L S AP +T + FLGP+
Sbjct: 567 AKAMESEDGVSGAVRAFLRHLPSRAEETAPQQTSSFLEFLGPL 609
>01_06_0517 +
29981537-29981927,29982024-29982231,29982373-29982544,
29984468-29984533,29984658-29984771,29984880-29984996,
29985097-29985223,29985317-29985603,29985701-29985891,
29985981-29986063,29986175-29986251,29986729-29986896
Length = 666
Score = 25.4 bits (53), Expect = 8.5
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 13 IDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIV 62
I Y+ +G+ SF+ +++ + +G +A S +LASI+
Sbjct: 116 ISYARLANLPPIIGLYSSFVPPLMYAVFGSSNNLAVGTVAAASLLLASII 165
>01_01_0091 - 719842-720902,721042-721071,721521-722226
Length = 598
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 41 WKFEDSMIGVIACFSRILASIVYAVAPNRTVYFL 74
W DS+ G I+C S S+ Y VAP V L
Sbjct: 121 WDSTDSIFGPISCLSNASQSL-YLVAPYAFVSIL 153
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.330 0.142 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,618,400
Number of Sequences: 37544
Number of extensions: 90070
Number of successful extensions: 238
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 9
length of query: 104
length of database: 14,793,348
effective HSP length: 72
effective length of query: 32
effective length of database: 12,090,180
effective search space: 386885760
effective search space used: 386885760
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 53 (25.4 bits)
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