Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001912-TA|BGIBMGA001912-PA|undefined
(104 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.002
SB_16675| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.025
SB_22525| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.71
SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18) 28 1.6
SB_7469| Best HMM Match : FerB (HMM E-Value=1.1) 27 2.2
SB_41454| Best HMM Match : FLYWCH (HMM E-Value=3.7) 27 2.2
SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39) 27 2.9
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.8
SB_13129| Best HMM Match : PUCC (HMM E-Value=0.013) 25 8.8
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 37.5 bits (83), Expect = 0.002
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 18 FLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVYFLGPV 77
F+A+ IG + I +F KR+ DS I + S I + +V+A A V FL P+
Sbjct: 331 FMAFRFLTQGIGGIVGIGIF-KRF-LSDSNIARVGLISLIASLVVFAFASKTWVVFLVPI 388
Query: 78 LDMFSSAGATSLRSLASKLVDSDEVG 103
+ + + + ++ + ++L DE G
Sbjct: 389 VGLLTGTISPIMKGMITQLTRPDERG 414
>SB_16675| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 33.9 bits (74), Expect = 0.025
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 18 FLAYSVFVGIIGSFITIYLFSKRW-KFEDSMIGVIACFSRILASIVYAVAPNRTVYFLGP 76
+LAY F G +G + I L K + +G I+ S +L ++A + + FLGP
Sbjct: 125 YLAYKYFTGGLGGAVMISLLKKCLNELNIVRVGYISVMSGLL---LFAFSDRTWMVFLGP 181
Query: 77 VLDMFSSAGATSLRSLASKLVDSDEVG 103
+ ++SK+V D+ G
Sbjct: 182 AVSFARGVTDPIFLDMSSKIVSQDDQG 208
>SB_22525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 29.1 bits (62), Expect = 0.71
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 19 LAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVYFLGPVL 78
L +++ G++G +I L + R+ + I V A S L ++ V+ + YFL +
Sbjct: 136 LIFTIPQGLVGEYIPPELKAGRFLLCQTKINVTADDS--LCNLDDTVSSSGIHYFLFVLG 193
Query: 79 DMFSSAGATSLRSLASKLVDSD 100
+ + AGAT L +L +D +
Sbjct: 194 QLIAGAGATPLHTLGPAYLDDN 215
>SB_19870| Best HMM Match : RVT_1 (HMM E-Value=0.18)
Length = 530
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 13 IDYSLFLAYSVFVGIIGSFITIYLFSKRW-KFEDSMIGVIACFSR---ILASIVYAVAPN 68
I Y+ F + V + I+ YLF + + + S I + CFS ++ +++ +PN
Sbjct: 345 IFYNFFASIRVPINT-RKVISSYLFKQGFQRLSASYIPYLCCFSSATDLICRVIFTTSPN 403
Query: 69 RTV 71
RTV
Sbjct: 404 RTV 406
>SB_7469| Best HMM Match : FerB (HMM E-Value=1.1)
Length = 277
Score = 27.5 bits (58), Expect = 2.2
Identities = 28/72 (38%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 15 YSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVYFL 74
Y +FL +VGI I ++LF W +D + G FS + S V VA TVYFL
Sbjct: 74 YMIFLTTVFYVGIAMGLIKVFLF---WHLKD-LGGTQMLFS--IMSGVNCVA-EVTVYFL 126
Query: 75 GPVLDMFSSAGA 86
L SS GA
Sbjct: 127 SSRL--ISSFGA 136
>SB_41454| Best HMM Match : FLYWCH (HMM E-Value=3.7)
Length = 113
Score = 27.5 bits (58), Expect = 2.2
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 32 ITIYLFSKRW-KFEDSMIGVIACFSR---ILASIVYAVAPNRTV 71
I+ YLF + + + S I + CFS ++ +++ +PNRTV
Sbjct: 65 ISSYLFKQGFHRLSASYIPYLCCFSSATDLICRVIFTTSPNRTV 108
>SB_18818| Best HMM Match : Peptidase_C1 (HMM E-Value=1.1e-39)
Length = 504
Score = 27.1 bits (57), Expect = 2.9
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 46 SMIGVIA-CFSRILASIVYAVAPN--RTVYFLGPVLDMFSSAGATSLRSLASKLVDS 99
+ +GVI C S IL V V N + + LG +DM++ RS+A ++VDS
Sbjct: 10 AFLGVIVLCVSSILLGGVEDVDKNDPQLLKVLGFAVDMYNLRSNNLYRSMAEEVVDS 66
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 26.6 bits (56), Expect = 3.8
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 15 YSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVY-F 73
Y+ F YS + IG F +++ S+R+ F+ + + C+ + + +A+ + TV F
Sbjct: 4333 YTTFDGYSFTLIAIGEFYIMHVTSQRFTFQ---VRHVPCYMQSICINSFAMRVSNTVLSF 4389
Query: 74 LGP 76
GP
Sbjct: 4390 HGP 4392
>SB_13129| Best HMM Match : PUCC (HMM E-Value=0.013)
Length = 347
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 45 DSMIGVIACFSRILASIVYAVAPNRTVYFLGPVLDMFSSAGATSLRSLASKLVDSDEVG 103
DS++ V+ + I + ++ A + FL V + SLR+ SKL D+ G
Sbjct: 192 DSLMVVVGILANIASYLLTGFAETTLMMFLTLVPQIPQGLATASLRTAMSKLGPPDKQG 250
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.330 0.142 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,975,507
Number of Sequences: 59808
Number of extensions: 96493
Number of successful extensions: 364
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 360
Number of HSP's gapped (non-prelim): 10
length of query: 104
length of database: 16,821,457
effective HSP length: 72
effective length of query: 32
effective length of database: 12,515,281
effective search space: 400488992
effective search space used: 400488992
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 53 (25.4 bits)
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