GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001912-TA|BGIBMGA001912-PA|undefined
         (104 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   0.44 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   1.0  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   3.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   4.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   4.1  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.8 bits (49), Expect = 0.44
 Identities = 11/20 (55%), Positives = 16/20 (80%), Gaps = 1/20 (5%)

Query: 17  LFLAY-SVFVGIIGSFITIY 35
           LF A+ S+ VG+IG+FIT +
Sbjct: 305 LFRAWESIIVGMIGAFITCF 324


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 1.0
 Identities = 8/29 (27%), Positives = 17/29 (58%)

Query: 11  TDIDYSLFLAYSVFVGIIGSFITIYLFSK 39
           T +D+ +FL+++     I  F  ++ F+K
Sbjct: 274 TALDFFVFLSFAFIFATIIQFAVVHYFTK 302


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query: 2   LFTRYKHKFTDIDYSLFLAYSVFVGIIGSFITIYLF 37
           + +RY  +    DY   +A  +  GI+GS +  + +
Sbjct: 348 IISRYVFRSALEDYCNIVATHLVCGILGSILVPFFY 383


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 41  WKFEDSMIGVIACFSRILASI 61
           W +   +I +I  +SR+L+SI
Sbjct: 227 WAYVIPLIFIILFYSRLLSSI 247


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 41  WKFEDSMIGVIACFSRILASI 61
           W +   +I +I  +SR+L+SI
Sbjct: 227 WAYVIPLIFIILFYSRLLSSI 247


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.330    0.142    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,433
Number of Sequences: 429
Number of extensions: 838
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 104
length of database: 140,377
effective HSP length: 49
effective length of query: 55
effective length of database: 119,356
effective search space:  6564580
effective search space used:  6564580
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.9 bits)
S2: 38 (19.4 bits)