Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001912-TA|BGIBMGA001912-PA|undefined
(104 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g55470.1 68418.m06909 sodium proton exchanger / Na+/H+ exchan... 29 0.78
At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative (CH... 29 0.78
At5g11780.1 68418.m01375 expressed protein 27 2.4
At1g78530.1 68414.m09153 protein kinase family protein contains ... 27 3.1
At1g61820.3 68414.m06976 glycosyl hydrolase family 1 protein con... 27 3.1
At1g61820.1 68414.m06975 glycosyl hydrolase family 1 protein con... 27 3.1
At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein con... 27 3.1
At4g28040.2 68417.m04023 nodulin MtN21 family protein similar to... 26 4.2
At4g28040.1 68417.m04022 nodulin MtN21 family protein similar to... 26 4.2
At5g61730.1 68418.m07746 ABC transporter family protein contains... 26 5.5
At2g40900.1 68415.m05047 nodulin MtN21 family protein similar to... 26 5.5
At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to ... 25 7.3
At2g17090.1 68415.m01973 protein kinase family protein similar t... 25 7.3
At2g05755.1 68415.m00619 integral membrane family protein contai... 25 7.3
At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00... 25 9.6
At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to... 25 9.6
At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to... 25 9.6
At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containi... 25 9.6
At1g21460.1 68414.m02683 nodulin MtN3 family protein contains si... 25 9.6
At1g04960.1 68414.m00494 expressed protein 25 9.6
>At5g55470.1 68418.m06909 sodium proton exchanger / Na+/H+ exchanger
4 (NHX4) identical to Na+/H+ exchanger 4 [Arabidopsis
thaliana] GI:19919844; Member of The Monovalent
Cation:Proton Antiporter (CPA1) Family, PMID:11500563
Length = 529
Score = 28.7 bits (61), Expect = 0.78
Identities = 21/85 (24%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 15 YSLFLAYSVFVGIIGSFI--TIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVY 72
+S + VG+I SF+ T+Y E +++ ++A S +LA + ++++ TV+
Sbjct: 219 FSTSTLLGIGVGLITSFVLKTLYFGRHSTTRELAIMVLMAYLSYMLAEL-FSLSGILTVF 277
Query: 73 FLGPVLDMFSSAGATSLRSLASKLV 97
F G ++ ++S T + S+ V
Sbjct: 278 FCGVLMSHYASYNVTESSRITSRHV 302
>At3g44920.1 68416.m04839 cation/hydrogen exchanger, putative
(CHX11) monovalent cation:proton antiporter family 2
(CPA2) member, PMID:11500563
Length = 671
Score = 28.7 bits (61), Expect = 0.78
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 5 RYKHKFTDIDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVY 63
R +FTDI +++FL + V + + +T+ L+ K + E + +I + + ++Y
Sbjct: 236 RILSQFTDIYFNIFLTLLILVIKLVACLTLCLYYKLPRSESLAVSLILSYKSFVEFVLY 294
>At5g11780.1 68418.m01375 expressed protein
Length = 494
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/70 (21%), Positives = 31/70 (44%)
Query: 27 IIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVYFLGPVLDMFSSAGA 86
++ + I +S + F D + + +CF +++ S + + + V L PV+ S
Sbjct: 61 LVWFYSAIRFYSSKLAFRDDSVRLTSCFFQLIVSFSDSFSGVKKVSLLSPVVYQLSRLVI 120
Query: 87 TSLRSLASKL 96
+ R S L
Sbjct: 121 SRRRDALSLL 130
>At1g78530.1 68414.m09153 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 355
Score = 26.6 bits (56), Expect = 3.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 16 SLFLAYSVFVGIIGSFITIYLFSKRWK 42
+ ++ SV +IG + LF KRWK
Sbjct: 8 TFYITISVVAFVIGKIVIALLFYKRWK 34
>At1g61820.3 68414.m06976 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-mannosidase enzyme (GI:17226270)
[Lycopersicon esculentum]
Length = 377
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 57 ILASIVYAVAPNRTVYFLGPVLDMFSSAGATSLRSLAS 94
IL +VY P V LG L FSS SL S S
Sbjct: 157 ILDPVVYGKYPEEMVNLLGSALPKFSSNEMNSLMSYKS 194
>At1g61820.1 68414.m06975 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-mannosidase enzyme (GI:17226270)
[Lycopersicon esculentum]
Length = 516
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/38 (42%), Positives = 17/38 (44%)
Query: 57 ILASIVYAVAPNRTVYFLGPVLDMFSSAGATSLRSLAS 94
IL +VY P V LG L FSS SL S S
Sbjct: 296 ILDPVVYGKYPEEMVNLLGSALPKFSSNEMNSLMSYKS 333
>At1g61810.1 68414.m06972 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase (GI:3820531) [Pinus
contorta]; similar to beta-glucosidase GI:804655 from
(Hordeum vulgare)
Length = 520
Score = 26.6 bits (56), Expect = 3.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 57 ILASIVYAVAPNRTVYFLGPVLDMFSSAGATSLRSLASKLV 97
IL ++Y P V LGP L FSS +L + V
Sbjct: 299 ILDPVIYGKYPKEMVDILGPALPQFSSNEVKNLEKSRADFV 339
>At4g28040.2 68417.m04023 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 359
Score = 26.2 bits (55), Expect = 4.2
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 16 SLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVYFLG 75
++F+ Y + + FI F W+ E+ + F + + V V N+ YF G
Sbjct: 37 TVFVVYRQAIATL--FICPISFISAWRKENKPSLGVRGFWWVALTAVIGVTVNQNAYFKG 94
Query: 76 PVLDMFSSAGATSLRSL--ASKLVDSDEVGF 104
+D+ SS+ A ++ +L A + S VGF
Sbjct: 95 --IDLSSSSMACAMTNLIPAVTFIISIIVGF 123
>At4g28040.1 68417.m04022 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 359
Score = 26.2 bits (55), Expect = 4.2
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Query: 16 SLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVYFLG 75
++F+ Y + + FI F W+ E+ + F + + V V N+ YF G
Sbjct: 37 TVFVVYRQAIATL--FICPISFISAWRKENKPSLGVRGFWWVALTAVIGVTVNQNAYFKG 94
Query: 76 PVLDMFSSAGATSLRSL--ASKLVDSDEVGF 104
+D+ SS+ A ++ +L A + S VGF
Sbjct: 95 --IDLSSSSMACAMTNLIPAVTFIISIIVGF 123
>At5g61730.1 68418.m07746 ABC transporter family protein contains
Pfam profile: PF00005 ABC transporter
Length = 940
Score = 25.8 bits (54), Expect = 5.5
Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 30 SFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVYFLGPVLDMFSSAG--AT 87
SF+ ++L + F+ +MIG+ S I++ A V+ +G + + ++AG +
Sbjct: 307 SFVLVFLLF--FLFQFNMIGLAFALSSIISKSSSATTVGFLVFLVGFITQIVTTAGFPYS 364
Query: 88 SLRSLASKLV 97
S S+ S+++
Sbjct: 365 SAYSIGSRVI 374
>At2g40900.1 68415.m05047 nodulin MtN21 family protein similar to
MtN21 [Medicago truncatula] GI:2598575; contains Pfam
profile PF00892: Integral membrane protein
Length = 394
Score = 25.8 bits (54), Expect = 5.5
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 21 YSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVYFLGPVLDM 80
+S V I ITI L + ++ E + + C +++ ++V V +++ GP ++
Sbjct: 103 FSSAVSNIVPAITIIL-ATLFRMEKVEMRKVRCLVKVMGTLVTVVGSILMIFYKGPFINF 161
Query: 81 FSS 83
F S
Sbjct: 162 FRS 164
>At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to
MtN3 GI:1619602 (root nodule development) from [Medicago
truncatula]
Length = 294
Score = 25.4 bits (53), Expect = 7.3
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 1 MLFTRYKHKFTDIDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFS-RILA 59
+LF Y +K T I L F+G + L +K E + G+ FS + A
Sbjct: 88 VLFVSYANKKTRISTLKVLGLLNFLGFAAIVLVCELLTKGSTREKVLGGICVGFSVSVFA 147
Query: 60 ---SIVYAVAPNRTVYFLGPVLDMFSSAGATS 88
SI+ V R+V F+ L +F + A +
Sbjct: 148 APLSIMRVVVRTRSVEFMPFSLSLFLTISAVT 179
>At2g17090.1 68415.m01973 protein kinase family protein similar to
Arabidopsis thaliana APK1A [SP|Q06548], APK1B
[SP|P46573]; contains Pfam profile: PF00069 Protein
kinase domain
Length = 465
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 69 RTVYFLGPVLDMFSSAGATSLRSLASKLVDSDEVG 103
R YF+ LD ++AG S +L++ V DE G
Sbjct: 150 RVAYFVAEALDYCNTAGFASYNNLSAYKVLFDEDG 184
>At2g05755.1 68415.m00619 integral membrane family protein contains
Pfam PF00892: Integral membrane protein domain
Length = 401
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 36 LFSKRWKFEDSMIGVIACFSRILASIVYAVAPNRTVYFLGPVLDMFSS 83
+ S+ W G FSR++ ++ ++ TVY +GP D SS
Sbjct: 353 VLSQLWLVSTGKTGSPGLFSRLVGCLLILLSVGYTVY-IGPAKDTESS 399
>At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00646
F-box domain
Length = 472
Score = 25.0 bits (52), Expect = 9.6
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 11 TDIDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSMIGVIACFSRILASIVYAVA 66
TD +YS +AY F + +++I FE ++ +I A I YAV+
Sbjct: 62 TDAEYSRIVAYRSFFCSVDKWVSITQHQVVESFEICFSHLVGFEDKIDALIEYAVS 117
>At4g01430.2 68417.m00184 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 305
Score = 25.0 bits (52), Expect = 9.6
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 1 MLFT-RYKHKFTDIDYSLFLAYSVFVGIIGSFITIYLFS--KRWKFEDSMIGVIACFSRI 57
MLF + K+ YS SVF + +++Y K W ED + ++ ++ I
Sbjct: 141 MLFQGKLSFKYPGNKYSSTCLMSVFASFQCAILSLYKSRDVKDWIIEDKFVILVTLYAGI 200
Query: 58 LASIVYAVAPNRTVYFLGPV 77
+ + V + ++ G V
Sbjct: 201 VGQAMSTVVTSWSIKMTGAV 220
>At4g01430.1 68417.m00183 nodulin MtN21 family protein similar to
MtN21 GI:2598575 (root nodule development) from
[Medicago truncatula]
Length = 365
Score = 25.0 bits (52), Expect = 9.6
Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 1 MLFT-RYKHKFTDIDYSLFLAYSVFVGIIGSFITIYLFS--KRWKFEDSMIGVIACFSRI 57
MLF + K+ YS SVF + +++Y K W ED + ++ ++ I
Sbjct: 201 MLFQGKLSFKYPGNKYSSTCLMSVFASFQCAILSLYKSRDVKDWIIEDKFVILVTLYAGI 260
Query: 58 LASIVYAVAPNRTVYFLGPV 77
+ + V + ++ G V
Sbjct: 261 VGQAMSTVVTSWSIKMTGAV 280
>At3g49140.1 68416.m05370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 1229
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 66 APNRTVYFLGPVLDMFSSAGATSLRSLASKLVDSD 100
+P TV+ LG VLD + +LR++ S+++ D
Sbjct: 37 SPQETVFLLGQVLDTYPD--IRTLRTVHSRIILED 69
>At1g21460.1 68414.m02683 nodulin MtN3 family protein contains
similarity to MTN3 (nodule development protein)
GB:Y08726 GI:1619601 from [Medicago truncatula]
Length = 247
Score = 25.0 bits (52), Expect = 9.6
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 31 FITIYLFSKRWKFEDSMIGVIACFSRILASI----VYAVAPNRTVYFLGPVLDMFSSAGA 86
++ I+LF K + + G+ +C + A++ ++A+ N F G +FS
Sbjct: 83 YVLIFLFYAPKKEKIKIFGIFSCVLAVFATVALVSLFALQGNGRKLFCGLAATVFSIIMY 142
Query: 87 TSLRSLASKLVDSDEVGF 104
S S+ +V + V F
Sbjct: 143 ASPLSIMRLVVKTKSVEF 160
>At1g04960.1 68414.m00494 expressed protein
Length = 317
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 12 DIDYSLFLAYSVFVGIIGSFITIYLFSKRWKFEDSM 47
D + S + +Y V +G+ Y++ K W F D+M
Sbjct: 86 DSNSSGYASYLVPAAAVGAMGYCYMWWKGWSFSDAM 121
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.330 0.142 0.420
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,209,655
Number of Sequences: 28952
Number of extensions: 77730
Number of successful extensions: 225
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 216
Number of HSP's gapped (non-prelim): 20
length of query: 104
length of database: 12,070,560
effective HSP length: 71
effective length of query: 33
effective length of database: 10,014,968
effective search space: 330493944
effective search space used: 330493944
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 52 (25.0 bits)
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