BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001911-TA|BGIBMGA001911-PA|IPR007114|Major facilitator superfamily, IPR011701|Major facilitator superfamily MFS_1 (328 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 29 0.91 SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyce... 29 0.91 SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces p... 28 1.6 SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 28 2.1 SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 3.7 SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 27 3.7 SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 26 6.4 SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 26 6.4 SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 26 6.4 SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 6.4 SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 26 6.4 SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c... 26 8.5 SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ... 26 8.5 SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 26 8.5 >SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 557 Score = 29.1 bits (62), Expect = 0.91 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 201 YSYISDITSESERTFRIGIVTAVLTLSKPVGLALSGIMTSNFGYKAVFVTACFIYMFGFI 260 Y+ ++D S S R G++T ++ + G +S T G + + C IY+ G I Sbjct: 44 YNPVTDTYSYSSA--RQGLITGMVNVGSFFGCLISSPTTDRIGKRNSIIGFCVIYLIGVI 101 >SPCC1529.01 ||SPCC794.14|membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 462 Score = 29.1 bits (62), Expect = 0.91 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 3/108 (2%) Query: 157 KLISAIGVMLSAVFFRQVGMNETXXXXXXXXXXXXXRVAMTMAVYS-YISDITSESERTF 215 +++ +G ++ VF G+ T A M + S ISD+ + ER Sbjct: 112 RMLLQVGNVIFIVFNMACGLARTKAQMYIFRFLAGFGSATPMGLGSGTISDLFTPDERGK 171 Query: 216 RIGIVTAVLTLSKPVGLALSGIMTSNFGYKAVFVTACFIYMFGFIYIL 263 + +++ L +G +SG + YK +F + GFI+ L Sbjct: 172 AVAVMSLAPLLGPTIGPVVSGFIAEYTTYKWIFWSTTI--FSGFIFAL 217 >SPBC4B4.08 |ght2||hexose transporter Ght2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 531 Score = 28.3 bits (60), Expect = 1.6 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 201 YSYISDITSESERTFRIGIVTAVLTLSKPVGLALSGIMTSNFGYKAVFVTACFIYMFGFI 260 Y I+D S S R G++T ++ + G +S + FG + + C +Y+ G I Sbjct: 48 YDPITDQYSLSSA--RQGLLTGMVNVGSLFGCIISSPIADRFGKRLSIIGFCAVYIIGII 105 >SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 630 Score = 27.9 bits (59), Expect = 2.1 Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 25 SKEINTENKLSRDLKESLKKIWRLRTKI 52 S ++ + KL DLK +KK+ RLR +I Sbjct: 24 SNSVSQKEKLEGDLKTQIKKLQRLRDQI 51 >SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit Bgs2|Schizosaccharomyces pombe|chr 1|||Manual Length = 1894 Score = 27.1 bits (57), Expect = 3.7 Identities = 17/59 (28%), Positives = 26/59 (44%) Query: 47 RLRTKITVEPFVICYVLPSVLAGLAVQNMCLEKSCLVNLQYDEETCRHIMQGRTQNYTE 105 RLR KI + ++L L + + + K L N + D +MQ R N+TE Sbjct: 1826 RLRKKIVQRYGTMFFLLLIAFLALIIIPLVVAKDLLANFEMDILRTYGLMQPRDTNWTE 1884 >SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Schizosaccharomyces pombe|chr 1|||Manual Length = 729 Score = 27.1 bits (57), Expect = 3.7 Identities = 13/38 (34%), Positives = 20/38 (52%) Query: 281 CVSLFSLSDLVATVKVGFKAREGTHRVQVILILICYML 318 C+ L S+S LV K G ++ T +Q+I+ I L Sbjct: 302 CIRLLSISCLVTLYKAGILSKNQTKEIQMIVTPILIRL 339 >SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 26.2 bits (55), Expect = 6.4 Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 230 VGLALSGIMTSNFGYKAVFVTACFIYMFGFIYILL 264 +G LS + NF + A ++ C MFGF + L Sbjct: 21 MGTGLSANVLHNFPFAARWLRICSYIMFGFALVCL 55 >SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 26.2 bits (55), Expect = 6.4 Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 230 VGLALSGIMTSNFGYKAVFVTACFIYMFGFIYILL 264 +G LS + NF + A ++ C MFGF + L Sbjct: 21 MGTGLSANVLHNFPFAARWLRICSYIMFGFALVCL 55 >SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 26.2 bits (55), Expect = 6.4 Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 230 VGLALSGIMTSNFGYKAVFVTACFIYMFGFIYILL 264 +G LS + NF + A ++ C MFGF + L Sbjct: 21 MGTGLSANVLHNFPFAARWLRICSYIMFGFALVCL 55 >SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1328 Score = 26.2 bits (55), Expect = 6.4 Identities = 12/31 (38%), Positives = 20/31 (64%) Query: 59 ICYVLPSVLAGLAVQNMCLEKSCLVNLQYDE 89 +CY LP+V+ G A + + L S L++L D+ Sbjct: 549 LCYQLPAVIEGGASRGVTLVISPLLSLMQDQ 579 >SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 26.2 bits (55), Expect = 6.4 Identities = 12/35 (34%), Positives = 18/35 (51%) Query: 230 VGLALSGIMTSNFGYKAVFVTACFIYMFGFIYILL 264 +G LS + NF + A ++ C MFGF + L Sbjct: 21 MGTGLSANVLHNFPFAARWLRICSYIMFGFALVCL 55 >SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr 2|||Manual Length = 519 Score = 25.8 bits (54), Expect = 8.5 Identities = 10/44 (22%), Positives = 23/44 (52%) Query: 204 ISDITSESERTFRIGIVTAVLTLSKPVGLALSGIMTSNFGYKAV 247 +SD + + +V+ V+ S +GL ++G + ++ +K V Sbjct: 423 LSDFVPKQHQGIAASLVSTVVNYSISIGLGIAGTVETHLNHKGV 466 >SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces pombe|chr 3|||Manual Length = 547 Score = 25.8 bits (54), Expect = 8.5 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 2/60 (3%) Query: 201 YSYISDITSESERTFRIGIVTAVLTLSKPVGLALSGIMTSNFGYKAVFVTACFIYMFGFI 260 Y+ ++D S S R G++T ++ + G LS + G + + +Y+ G I Sbjct: 44 YNPVTDTYSYSSA--RQGLITGMVNVGSMTGCILSSPLMDRIGKRVSIMFWTIVYLIGII 101 >SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pombe|chr 3|||Manual Length = 983 Score = 25.8 bits (54), Expect = 8.5 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 16/101 (15%) Query: 16 EPCKCNKQYSKEINTENKLSR------DLKESLKKIWRLRTKITVEP----FVICYVLPS 65 EP K YS ++ +N +S L+ S+ IWR TK+++ P F+ C L Sbjct: 34 EPGFFGKLYSIFLDKQNDMSLRWIAIIQLRNSIDIIWRKNTKMSLLPEERDFIRCNALLG 93 Query: 66 VLAG---LAVQNMCLEKSCLVNLQYDEE--TCRHIMQGRTQ 101 + L++QN L S + L Y E + H + G+ Q Sbjct: 94 SIKSENLLSIQN-ALVVSRIARLDYPTEWPSLFHDLLGKLQ 133 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.325 0.137 0.403 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,248,997 Number of Sequences: 5004 Number of extensions: 45000 Number of successful extensions: 180 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 168 Number of HSP's gapped (non-prelim): 14 length of query: 328 length of database: 2,362,478 effective HSP length: 73 effective length of query: 255 effective length of database: 1,997,186 effective search space: 509282430 effective search space used: 509282430 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.6 bits) S2: 54 (25.8 bits)
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