GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001911-TA|BGIBMGA001911-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (328 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)                104   1e-22
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)                 94   1e-19
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   3e-10
SB_49164| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   3e-09
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              57   2e-08
SB_57014| Best HMM Match : PMP22_Claudin (HMM E-Value=4.6)             56   3e-08
SB_13129| Best HMM Match : PUCC (HMM E-Value=0.013)                    40   0.002
SB_48374| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.046
SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.14 
SB_51838| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 31   1.3  
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)         30   2.3  
SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  

>SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)
          Length = 446

 Score =  104 bits (249), Expect = 1e-22
 Identities = 81/278 (29%), Positives = 131/278 (47%), Gaps = 21/278 (7%)

Query: 47  RLRTKITVEPFVICYVLPSVLAGLAVQNMCLEKSCLVNLQYDEETCRHIMQGRTQNYTEQ 106
           R    ITVEP +  Y+  + ++   +Q +   K C  +  Y+   C ++      +Y  +
Sbjct: 5   RSMKSITVEPVLFLYMFCTFMSSPLLQQLAYRKICKEH--YNTSACNNL-----SDYQNE 57

Query: 107 EKKVQRMVTTMSSWS--SPLQTAPPGILA-LFIGAWSDRTGNRKAFMIVPILGKLISAIG 163
           +  VQ   T+ S+W     L  A P I + L +GAWSDR G RKA MI+P +G ++  I 
Sbjct: 58  QNYVQ---TSTSNWMRYQALALALPSIASSLVLGAWSDRVG-RKAIMILPPVGNILMNIN 113

Query: 164 VMLSAVFFRQVGMNETXXXXXXXXXXXXXRVAMTM-AVYSYISDITSESERTFRIGIVTA 222
            ML+  FF    +N                 A T+ +V+SY++DIT +S RT RI I+ +
Sbjct: 114 YMLNVHFF---SLNVNYLIIGIVIAGTFGGFATTLLSVFSYMADITDKSHRTLRISILES 170

Query: 223 VLTLSKPVGLALSGIMTSNFGYKAVFVTACFIYMFGFIYILLRIXXXXXXTVDGTKLECV 282
           ++ L   VG  ++G+M  + G+ A F  A  +      Y+   +          +   C 
Sbjct: 171 MVFLGGSVGELVAGVMLDHSGFMATFGLALGLNCCIAAYVTFILPESYFPNGQVSNQRC- 229

Query: 283 SLFSLSDLVATVKVGFKAREGTHRVQVILILICYMLIV 320
             F L  L    KV FK REG  R+ ++++L   M ++
Sbjct: 230 --FLLEHLSTAAKVLFKRREGNSRLYLLVVLFGAMSVL 265


>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
          Length = 1193

 Score = 94.3 bits (224), Expect = 1e-19
 Identities = 74/285 (25%), Positives = 127/285 (44%), Gaps = 15/285 (5%)

Query: 52  ITVEPFVICYVLPSVLAGLAVQNMC---LEKSCLVNLQYDEE----TCRHIMQGRTQNYT 104
           ITVEP + CY    +L    +Q      L +   +  +Y+      TC  I    +   T
Sbjct: 39  ITVEPVIFCYAFGIILHVPVIQQYIHQRLSEGKGLTYEYNNTDSRTTCEPIQMANSSEET 98

Query: 105 -EQEKKVQRMVTTMSSWSSPLQTAPPGILALFIGAWSDRTGNRKAFMIVPILGKLISAIG 163
            E +K+VQ   + M        + P  ++AL +GAWSDR G R+A M +PI G  + +  
Sbjct: 99  LELQKEVQAEASYMQMGLVLSVSTPSLLVALLLGAWSDRAGRRRA-MAMPIFGSAVESAI 157

Query: 164 VMLSAVFFRQVGMNETXXXXXXXXXXXXXRVAMTMAVYSYISDITSESERTFRIGIVTAV 223
           +++   F   V                     M ++V+SYI+DIT ES+R FR+GI+ A+
Sbjct: 158 ILVIMYFELPVTF---LLLAEFINGSCGFFPTMVLSVFSYIADITEESQRAFRLGILEAI 214

Query: 224 LTLSKPVGLALSGIMTSNFGYKAVFVTACFIYMFGFIYILLRIXXXXXXTVDGTKLECVS 283
             +S  +    SG   +N G++A +     +  F  +Y+   +       V   +   V 
Sbjct: 215 AFISGMLSHLTSGWWINNLGFRAPYWLLLILNTFALLYVTFILPESRAKHV--MEKSKVR 272

Query: 284 LFSLSDLVATVKVGFKAREGTHRVQVILILICYMLIVGPLLGKYF 328
           + SL  + A V +  K+R+   R+ + +++   M++     G  F
Sbjct: 273 VLSLDHIRAIVMIFTKSRD-PQRMTIFMVISGLMIVSSIGFGSVF 316


>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 12/221 (5%)

Query: 98  GRTQNYTEQEKKVQRMVTTMSSWSSPLQTAPPGILALFIGAWSDRTGNRKAFMIVPILGK 157
           G++ N   QEK  Q ++    +++  LQ  P  + A  +G WSD+ G RK  M++   G 
Sbjct: 70  GQSANDAVQEKASQYIL----AYNLALQL-PAVLTACLLGTWSDKNG-RKPLMLIVAFGA 123

Query: 158 LISAIGVMLSAVFFRQVGMNETXXXXXXXXXXXXXRVAMTMAVYSYISDITSESERTFRI 217
           ++ A  V L  V+    G                    M +A+ +YI+D T    R  ++
Sbjct: 124 IVDA-SVALFTVYTD--GPLYPLIIGGGINGVMGFYPTMVLALLAYIADTTPPERRAIKL 180

Query: 218 GIVTAVLTLSKPVGLALSGIMTSNFGYKAVFVTACFIYMFGFIYILLRIXXXXXXTVDGT 277
            ++ A+  LS  +G   SGI   + GYKA F     +++  FIY+L  +           
Sbjct: 181 AVLEALAFLSGTLGHFSSGIYIHHLGYKATFWGILSLHLINFIYLLFFLPESMPKQRIEQ 240

Query: 278 KLECVSLFSLSDLVATVKVGFKAREGTHRVQVILILICYML 318
             +C+   +L  + +   V  K R+G   + V+ +L  + L
Sbjct: 241 SGKCL---TLEQVKSVYMVYLKKRDGRWILCVLSLLSVFFL 278


>SB_49164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 44/193 (22%), Positives = 87/193 (45%), Gaps = 9/193 (4%)

Query: 135 FIGAWSDRTGNRKAFMIVPILGKLISAIGVMLSAVFFRQVGMNETXXXXXXXXXXXXXRV 194
           F G+++DR G RK  +I P++G ++  + ++L  V + ++ +                  
Sbjct: 115 FTGSYTDRRG-RKPGLIAPLVGAILETLVLVL--VLYLELPVY-VLIVGGLVNGLTGNEA 170

Query: 195 AMTMAVYSYISDITSESERTFRIGIVTAVLTLSKPVGLALSGIMTSNFGYKAVFVTACFI 254
            M MA   Y++D T + ++ FR+ I+  VL  S  V    SG+     G++   +TA F 
Sbjct: 171 TMMMATTCYVTDTTDDKQKAFRLSILQGVLFFSATVSQLTSGLWIEYLGFR---ITAWFE 227

Query: 255 YMFGFIYILLRIXXXXXXTVDGTKLECVSLFSLSDLVATVKVGFKAREGTHRVQVILILI 314
                + ++  I           + +C   FSL  +   +++  KARE   R   +L++ 
Sbjct: 228 ISLLIVPLIYVIFFVEESRTSSRENDC-RFFSLESIKPALRIFTKARE-EGRGNFLLLIA 285

Query: 315 CYMLIVGPLLGKY 327
           C+ ++    +G +
Sbjct: 286 CFGIVFFSTVGTF 298


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 42/180 (23%), Positives = 76/180 (42%), Gaps = 6/180 (3%)

Query: 87  YDEETCRHIMQGRTQNYTEQEKKVQRMVTTMSSWSSPLQTAPPGILALFIGAWSDRTGNR 146
           Y  E       G   +    E+KVQ         +  + + P  I++L +G W+D  G +
Sbjct: 51  YSAERETGCQAGNDSDMAALERKVQDSAARYDIGNVMIMSIPSVIVSLMLGPWTDTAGRK 110

Query: 147 KAFMIVPILGKLISAIGVMLSAVFFRQVGMNETXXXXXXXXXXXXXRVAMTMAVYSYISD 206
           +A ++ P +G L+ +I  +L  V + +  +                 V MT A  +YI+D
Sbjct: 111 RA-IVAPAIGSLLESINTLL--VMYLKWPILVLFVGSAFTGFSGFFTV-MTQASMAYIAD 166

Query: 207 ITSESERTFRIGIVTAVLTLSKPVGLALSGIMTSNFGY--KAVFVTACFIYMFGFIYILL 264
            T E +   R+ I+  +L +   V    +G     +G+     F+ ACF     ++ +LL
Sbjct: 167 TTPEQQVALRLAIMQLMLLIGGLVSQLTTGPWLRTYGFIEPYWFIFACFTLATFYVVVLL 226


>SB_57014| Best HMM Match : PMP22_Claudin (HMM E-Value=4.6)
          Length = 177

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 11/174 (6%)

Query: 49  RTKITVEPFVICYVLPSVLAGLAVQNMCLEKSCLVN-LQYDEETCRHIMQGRTQNYTEQ- 106
           RT +T+EP +  YV   ++ G  +Q     K        YD  +  H   G    Y    
Sbjct: 9   RTLLTIEPVIFLYVYGILMHGPVIQQFVYSKIAKQKGFFYDPSS--HTGCGNETRYNSTL 66

Query: 107 ---EKKVQRMVTTMSSWSSPLQTAPPGILALFIGAWSDRTGNRKAFMIVPILGKLISAIG 163
              E++VQ     +    +  ++ P  +L+L +G+WSD  G RK  +++P++G ++ A+ 
Sbjct: 67  HNLEQEVQATAAYVQIGITMFESLPSIVLSLMVGSWSDCHG-RKPAILLPVIGSMLEAVC 125

Query: 164 VMLSAVFFRQVGMNETXXXXXXXXXXXXXRVAMTMAVYSYISDITSESERTFRI 217
           V++  V +  + +                   + M + +YI+D T ES+R  R+
Sbjct: 126 VLI--VMYCDLDVY-VLFIGALLNGCSGYLPTLLMGIMAYIADSTDESQRALRL 176


>SB_13129| Best HMM Match : PUCC (HMM E-Value=0.013)
          Length = 347

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 1/65 (1%)

Query: 201 YSYISDITSESERTFRIGIVTAVLTLSKPVGLALSGI-MTSNFGYKAVFVTACFIYMFGF 259
           ++Y+SDIT   +R  RIGI+ +V+ +       +SGI +  + GYK  F     I +F  
Sbjct: 28  FAYLSDITDIKKRGVRIGILESVIYVGATASFFISGIWVRESGGYKQPFWDCAGIALFTV 87

Query: 260 IYILL 264
           +Y L+
Sbjct: 88  LYTLV 92


>SB_48374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 573

 Score = 35.9 bits (79), Expect = 0.046
 Identities = 16/65 (24%), Positives = 33/65 (50%)

Query: 200 VYSYISDITSESERTFRIGIVTAVLTLSKPVGLALSGIMTSNFGYKAVFVTACFIYMFGF 259
           V++Y++D T ++ER+   G+V+A    S  +  AL   ++  +    V   A  I     
Sbjct: 20  VFAYVADCTEQNERSTAYGLVSATFAASLIISPALGAYLSKTYNDNLVVALATAIAALDI 79

Query: 260 IYILL 264
           +++L+
Sbjct: 80  LFVLV 84


>SB_22660| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1179

 Score = 34.3 bits (75), Expect = 0.14
 Identities = 43/175 (24%), Positives = 78/175 (44%), Gaps = 13/175 (7%)

Query: 3   LRVEVPGEKVVSVEPCKCNKQYSKEINTENKLSRDLKESLKKIWRLRT--KITVEPFVIC 60
           L + V GE+ V+  P      Y  EI TE ++ +   E  K + + RT  KI+ EP  + 
Sbjct: 58  LGIRVTGEEEVNHIPYP----YFDEIPTEEEMKKKSAEFYKSMKKRRTVRKISSEPVPLE 113

Query: 61  YVLPSV-LAGLAVQNMCLEKSCLVNLQYDE--ETCRHIMQGRTQ-NYTEQ--EKKVQRMV 114
            +   V +AG +      E    V ++  +  +  + +++   Q NY  +  EK VQ + 
Sbjct: 114 VIENIVRVAGTSPSGAHTEPWTYVVIRDPDLKKQIKEVVEEEEQLNYARRMGEKWVQDLS 173

Query: 115 TTMSSWSSPLQTAPPGILALFIGAWSDRTGNRKAFMIVPILGKLISAIGVMLSAV 169
              ++WS P   A P ++ +F   +  +    K       +   IS  G++L+A+
Sbjct: 174 MLKTTWSKPYIEAAPYLILIFKQVYGIKPDGEKKVHYYNEISVCISC-GLLLAAI 227


>SB_51838| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 358

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 51  KITVEPFVICYVLPSVLAGLAVQNMCLEKS 80
           K+ ++PF+ C+ LP   A L    MC EKS
Sbjct: 311 KVLLDPFIYCWRLPKYRAALRNTLMCREKS 340


>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
          Length = 741

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 26  KEINTENKLSRDLKESLKKIWRLRTKIT--VEPFVICYVLPSVLAGLAVQNMCLEKSCL 82
           K +N     +RDL   L +     T I+  V P  IC+  PS +     QN+CL+ SCL
Sbjct: 495 KSLNASEYNTRDLLTDLLQPKYFHTSISSSVLPSFICF--PSYMIPAFGQNICLKGSCL 551


>SB_17985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 818

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 6   EVPGEKVVSVEPCKCNKQYSKEINTENKLSRDLKESLKKIWRLRTKITVE 55
           EVP  +VV+    +C K+  K+  T  K   DL+E LK++   + K+  E
Sbjct: 271 EVPSSQVVA----ECVKEERKKTTTLGKECSDLREKLKEVTAEKNKLEEE 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.137    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,060,299
Number of Sequences: 59808
Number of extensions: 316565
Number of successful extensions: 1131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1115
Number of HSP's gapped (non-prelim): 13
length of query: 328
length of database: 16,821,457
effective HSP length: 82
effective length of query: 246
effective length of database: 11,917,201
effective search space: 2931631446
effective search space used: 2931631446
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)