Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001911-TA|BGIBMGA001911-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
(328 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g67220.1 68414.m07651 zinc finger protein-related similar to ... 30 2.5
At3g46980.2 68416.m05102 transporter-related low similarity to b... 29 3.2
At3g46980.1 68416.m05101 transporter-related low similarity to b... 29 3.2
At4g00370.1 68417.m00051 sugar transporter family protein contai... 29 4.3
At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5 ... 28 7.5
At4g35470.1 68417.m05041 leucine-rich repeat family protein simi... 28 9.9
At1g63720.1 68414.m07211 expressed protein similar to putative p... 28 9.9
>At1g67220.1 68414.m07651 zinc finger protein-related similar to
SP|Q09472 E1A-associated protein p300 {Homo sapiens},
SP|Q92793 CREB-binding protein {Homo sapiens}; contains
Pfam profiles PF00569: Zinc finger ZZ type, PF00628:
PHD-finger, PF02135: TAZ zinc finger
Length = 1357
Score = 29.9 bits (64), Expect = 2.5
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 11/80 (13%)
Query: 15 VEPCKCNKQYSKEINTEN-KLSRDLKESLKKIWRLRTKITVEPFVICYVLPSVLAGLAVQ 73
VEP KCN++ E+N + L + K ++ + R T+ ++ ++ PS + AV+
Sbjct: 577 VEPMKCNEESKCEVNADTMSLQKRSKRAVSLVERF-TEEEIKLHIMSLKKPSTQS--AVE 633
Query: 74 NMCLEKSCLVNLQYDEETCR 93
MC +L+ +EE+C+
Sbjct: 634 GMC-------DLKEEEESCQ 646
>At3g46980.2 68416.m05102 transporter-related low similarity to
brain specific Na+-dependent inorganic phosphate
cotransporter from [Rattus norvegicus] GI:507415, [Homo
sapiens] GI:7328925, vesicular glutamate transporter 3
from [Rattus norvegicus] GI:21685382; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 469
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 211 SERTFRIGIVTAVLTLSKPVGLALSGIMTSNFGYKAVFVTACFIYMFGFIYILL 264
+ER+ +GI A L VGL LS I+ S G FV + GF+++L+
Sbjct: 235 TERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFV---IFGLSGFLWLLV 285
>At3g46980.1 68416.m05101 transporter-related low similarity to
brain specific Na+-dependent inorganic phosphate
cotransporter from [Rattus norvegicus] GI:507415, [Homo
sapiens] GI:7328925, vesicular glutamate transporter 3
from [Rattus norvegicus] GI:21685382; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 533
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 211 SERTFRIGIVTAVLTLSKPVGLALSGIMTSNFGYKAVFVTACFIYMFGFIYILL 264
+ER+ +GI A L VGL LS I+ S G FV + GF+++L+
Sbjct: 235 TERSRAVGIAMAGFQLGNVVGLMLSPILMSQGGIYGPFV---IFGLSGFLWLLV 285
>At4g00370.1 68417.m00051 sugar transporter family protein contains
Pfam profile PF00083: major facilitator superfamily
protein
Length = 541
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 194 VAMTMAVYSYISDITSESERTFRIGIVTAVLTLSKPVGLALSGIMTSNFGYKAVF 248
VAM A+ + +S SER+ + +V + + L GLA S ++ + FG+ +VF
Sbjct: 239 VAMP-AMNNMLSKWIPVSERSRSLALVYSGMYLGSVTGLAFSPMLITKFGWPSVF 292
>At5g18230.1 68418.m02139 transcription regulator NOT2/NOT3/NOT5
family protein contains Pfam domain PF04153: NOT2 /
NOT3 / NOT5 family
Length = 843
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 21 NKQYSKE-INTENKLSRDLKESLKKIWRLRTKI 52
NK Y + +N + K DLK+ +KK+ R R +I
Sbjct: 30 NKVYDTDNVNQKEKFEADLKKEIKKLQRYRDQI 62
>At4g35470.1 68417.m05041 leucine-rich repeat family protein similar
to Leucine-rich repeat protein SHOC-2 (Ras-binding
protein Sur-8) (SP:Q9UQ13 ){Homo sapiens},PIR:T12704;
contains Pfam PF00560: Leucine Rich Repeat domains
Length = 549
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 22 KQYSKEINTENKLSRDLK---ESLKKIWRLRTKITVEPFVICYVLPSVLAGLA 71
K+ ++EIN +NKL+ L+ +SL K+ L + E ++ VLP+ + GL+
Sbjct: 219 KKATQEINLQNKLTEQLEWLPDSLGKLSSLTSLDLSENHIV--VLPNTIGGLS 269
>At1g63720.1 68414.m07211 expressed protein similar to putative
protein GB:CAA18164 [Arabidopsis thaliana]
Length = 358
Score = 27.9 bits (59), Expect = 9.9
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 211 SERTFRIGIVTAVLTLSKPVGLALSGIMTSNFGYKAVFVTACFI 254
S + RIG +VL + +PV ++ S TSN GY++V T FI
Sbjct: 53 SRQRKRIG--NSVL-VPEPVSMSSSNSTTSNSGYRSVITTLPFI 93
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.325 0.137 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,515,180
Number of Sequences: 28952
Number of extensions: 235145
Number of successful extensions: 802
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 798
Number of HSP's gapped (non-prelim): 13
length of query: 328
length of database: 12,070,560
effective HSP length: 81
effective length of query: 247
effective length of database: 9,725,448
effective search space: 2402185656
effective search space used: 2402185656
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)
- SilkBase 1999-2023 -