GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001910-TA|BGIBMGA001910-PA|IPR000832|GPCR, family 2,
secretin-like, IPR002001|Diuretic hormone receptor
         (213 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo...    26   3.6  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    26   4.8  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   4.8  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    25   6.3  

>SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 391

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query: 143 WSPRSRTESIRSYSKKLTRFKIRRIGTDS 171
           W   S  ES+RSYS+K ++     IG +S
Sbjct: 81  WRKPSAFESLRSYSRKFSKRIFSFIGVES 109


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 79  DSWFAYSFDYARALMLSTQGFTVALFYC 106
           D W  Y+F  + AL   TQ   + LF+C
Sbjct: 713 DWWQKYNFTLSAALDTGTQLSVIILFFC 740


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 6/49 (12%)

Query: 76   PSDDSWFAYSFDYARALMLSTQGFTVALFYCFMNTEVRHA---IRYHVE 121
            P +D W+  + +YA A+   T+    A+FY    TE   +   +R+H +
Sbjct: 1935 PDEDGWYEPNSEYAAAI---TKSNVHAVFYSCSTTEASVSTPEVRFHAD 1980


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 138 SYSKDWSPRSRTESIRSYSKKLTRFKIRRIGTDSVLNTVNKTVGQV 183
           S  + WS +   +S R+ S   +  +   +G+D VL   + + G+V
Sbjct: 48  SLVEQWSTKRHKKSCRNISVNESGTEFISVGSDGVLKIADTSTGRV 93


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 830,726
Number of Sequences: 5004
Number of extensions: 27311
Number of successful extensions: 60
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 56
Number of HSP's gapped (non-prelim): 5
length of query: 213
length of database: 2,362,478
effective HSP length: 70
effective length of query: 143
effective length of database: 2,012,198
effective search space: 287744314
effective search space used: 287744314
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)