GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001910-TA|BGIBMGA001910-PA|IPR000832|GPCR, family 2,
secretin-like, IPR002001|Diuretic hormone receptor
         (213 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0732 + 23965090-23965431,23965610-23965746,23967359-239674...    32   0.30 
09_04_0438 + 17590959-17591267,17592137-17592227,17592405-175925...    29   2.1  
06_01_0001 - 18456-18521,18692-18874,19046-19153,19337-19396,197...    29   3.7  

>06_03_0732 +
           23965090-23965431,23965610-23965746,23967359-23967417,
           23968817-23970135
          Length = 618

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 77  SDDSWFAYSFDYARA--LMLSTQGFTVALFYCFMNTEVRH 114
           +D S F YSFD A A  LM+  +  T A FY  ++T+ RH
Sbjct: 144 ADSSGFTYSFDIANASKLMVGGERCTTAPFYKNIDTDHRH 183


>09_04_0438 +
           17590959-17591267,17592137-17592227,17592405-17592559,
           17592866-17592893,17592953-17593091,17593587-17593668
          Length = 267

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/29 (41%), Positives = 19/29 (65%)

Query: 37  ITKLRSANTLETEQYRKATKALLVLIPLL 65
           I+ L++AN    +Q RK  K L++L+P L
Sbjct: 178 ISSLKTANECSPDQIRKVLKLLIILLPAL 206


>06_01_0001 -
           18456-18521,18692-18874,19046-19153,19337-19396,
           19755-19937,20109-20291,20816-20998,21170-21352,
           21524-21581,21878-21935,22586-22643,22938-22995,
           23292-23349,23998-24007
          Length = 482

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 35  VLITKLRSANTLETEQYRKATKALLVLIPLLGITNLLVLCGPSDDSWFAYSFDYARALML 94
           V+  K+ S   L+ +   K    +L  IP+L  T+L   CGPSD   FA +   +  +  
Sbjct: 345 VISRKISSVPPLQIQSL-KGESNVLCAIPIL-TTSLKTSCGPSDIRCFAETTAASWPMCR 402

Query: 95  STQGFTVALFYCFMNTEVRHAIRYHV 120
           + Q          ++T++ +AI  +V
Sbjct: 403 ARQPTLTTRLVDALDTDIVYAIHSNV 428


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.135    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,315,428
Number of Sequences: 37544
Number of extensions: 162445
Number of successful extensions: 424
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 418
Number of HSP's gapped (non-prelim): 8
length of query: 213
length of database: 14,793,348
effective HSP length: 79
effective length of query: 134
effective length of database: 11,827,372
effective search space: 1584867848
effective search space used: 1584867848
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 58 (27.5 bits)