Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001909-TA|BGIBMGA001909-PA|undefined
(115 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1528 + 38011391-38011635,38012366-38012566,38012659-380128... 28 1.6
01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001 28 1.6
02_04_0236 - 21170753-21170794,21171089-21172220,21172332-211726... 27 4.8
03_02_0880 - 12103703-12103726,12103938-12104210,12104389-121049... 26 6.4
01_06_1191 - 35297005-35297473,35297812-35298965 26 6.4
01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188 26 6.4
01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932 26 6.4
04_04_1356 + 32854585-32854832,32854948-32855148,32855270-328554... 26 8.4
01_06_0205 - 27495030-27495128,27495397-27496265,27496352-274965... 26 8.4
>01_06_1528 +
38011391-38011635,38012366-38012566,38012659-38012836,
38012946-38013208,38013380-38013649,38013753-38014950
Length = 784
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 9 GALAGVSRI----AGCLMFALAPTRQWFYSAPLFNIFSFTGLTAI 49
GA AGV+ G ++FAL W+ SA L+ FS T + A+
Sbjct: 270 GAAAGVTAAFRAPVGGVLFALEEATSWWRSALLWRTFSTTAVAAM 314
>01_06_0929 + 33091184-33091510,33092503-33092646,33093054-33097001
Length = 1472
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 78 SIYMPASSYIYMSTIETFPGAFYLFDAALTVVALCL 113
++Y+P SY + I F A LF A + + LCL
Sbjct: 160 NLYIPICSYALLLLIHLFTAAPVLFMAEVVLAGLCL 195
>02_04_0236 -
21170753-21170794,21171089-21172220,21172332-21172601,
21173043-21173305,21173406-21173492,21174149-21174326,
21174784-21174984,21175769-21176025
Length = 809
Score = 26.6 bits (56), Expect = 4.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 6 SIIGALAGVSRIAGCLMFALAPTRQWFYSAPLFNIFSFTGLTAI 49
S G A G ++FAL W+ SA L+ F T + A+
Sbjct: 304 SAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRAFFTTAVVAV 347
>03_02_0880 -
12103703-12103726,12103938-12104210,12104389-12104931,
12105017-12105374,12105696-12105994,12106116-12106189,
12106630-12106717,12107573-12107674,12107813-12107841,
12108118-12108235
Length = 635
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 64 KLSALIGVTESLAPSIYMPASSYIYMSTIETFPGAFYLFDAALTV 108
KL ++ +TE A +M S+Y+Y + T P + + + LTV
Sbjct: 265 KLRQILHMTEDEA-HFHMKQSAYLYNLGVHTMPKSHHCLNMRLTV 308
>01_06_1191 - 35297005-35297473,35297812-35298965
Length = 540
Score = 26.2 bits (55), Expect = 6.4
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 71 VTESLAPSIYMPASSYIYMSTIETFPG 97
V SLA S Y+ S+ +Y S ETFPG
Sbjct: 136 VAVSLATS-YLGLSAKVYTSLAETFPG 161
>01_04_0032 + 15273716-15273865,15274658-15274706,15275737-15276188
Length = 216
Score = 26.2 bits (55), Expect = 6.4
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 57 VPTEEVAKLSALIGVTES-LAPSIYMPASSYIYMSTIETFPGAFYLFDAA 105
V E + KL + V E+ L+ S Y+ A +I ++ I FP +YL +A
Sbjct: 132 VVNESLEKLKKALEVYEAQLSKSKYL-AGDFISLADISHFPTVYYLLASA 180
>01_04_0030 - 15263341-15263801,15264631-15264679,15264783-15264932
Length = 219
Score = 26.2 bits (55), Expect = 6.4
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 48 AIRSIAT-KSVPTEEVAKLSALIGVTES-LAPSIYMPASSYIYMSTIETFPGAFY 100
A+R I T + V E KL ++ V E+ L+ S Y+ A ++ + + FP FY
Sbjct: 125 AMRGIPTNQKVVDESAEKLKKVLEVYEARLSQSTYL-AGDFVSFADLNHFPYTFY 178
>04_04_1356 +
32854585-32854832,32854948-32855148,32855270-32855447,
32856389-32856651,32856800-32857040,32857317-32858456,
32858856-32858993
Length = 802
Score = 25.8 bits (54), Expect = 8.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 9 GALAGVSRIAGCLMFALAPTRQWFYSAPLFNIFSFTGLTAI 49
G A G ++FAL W+ SA L+ F T + A+
Sbjct: 275 GIAAAFRAPVGGVLFALEAVSSWWRSALLWRAFFTTAMVAV 315
>01_06_0205 -
27495030-27495128,27495397-27496265,27496352-27496511,
27497136-27497208,27497311-27497430,27498454-27498618,
27498695-27498785,27499381-27499465,27499555-27499740,
27499843-27499899,27499998-27500282
Length = 729
Score = 25.8 bits (54), Expect = 8.4
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 70 GVTESLAPSIYMPASSYIYMSTIETFPGAFYLF 102
G+T S+ P P+S ++ T PG Y++
Sbjct: 551 GITTSVLPQASSPSSVLMFPQTSSKMPGLEYIY 583
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.326 0.136 0.399
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,290
Number of Sequences: 37544
Number of extensions: 94140
Number of successful extensions: 268
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 9
length of query: 115
length of database: 14,793,348
effective HSP length: 73
effective length of query: 42
effective length of database: 12,052,636
effective search space: 506210712
effective search space used: 506210712
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)
- SilkBase 1999-2023 -