GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001909-TA|BGIBMGA001909-PA|undefined
         (115 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16675| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.025
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.2  
SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   2.2  
SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)                    27   2.8  
SB_12930| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_11254| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.8  
SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)                   26   6.6  
SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8)                       26   6.6  
SB_49799| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   8.7  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         26   8.7  

>SB_16675| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 308

 Score = 34.3 bits (75), Expect = 0.025
 Identities = 21/100 (21%), Positives = 45/100 (45%), Gaps = 1/100 (1%)

Query: 14  VSRIAGCLMFALAPTRQWFYSAPLFNIFSFTGLTAIRSIATKSVPTEEVAKLSALIGVTE 73
           +S ++G L+FA +      +  P  +            +++K V  ++   L A++G+  
Sbjct: 159 ISVMSGLLLFAFSDRTWMVFLGPAVSFARGVTDPIFLDMSSKIVSQDDQGSLFAVVGILS 218

Query: 74  SLAPSIYMPASSYIY-MSTIETFPGAFYLFDAALTVVALC 112
           ++   +     + IY MS    FPG  ++  A + ++ LC
Sbjct: 219 TIGELVGTSLFNNIYPMSLRFGFPGLVFVISAGIFLIILC 258


>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 5/104 (4%)

Query: 17  IAGCLMFALAPTRQWFYSAPLFNIFSFTGLTAIRSIATKSVPTEEVAKLSALIGVTESL- 75
           IAG  M   + T    + + + N+FS      IR+  ++ V  EE   L A++   ESL 
Sbjct: 345 IAGLTMIGFSQTTFLMFMSCVANLFSGVPQPCIRAQMSQMVGKEEQGALFAILASLESLT 404

Query: 76  ---APSIYMPASSYIYMSTIETF-PGAFYLFDAALTVVALCLFG 115
              +  I+ P  ++   +    +  G  +  +A + V+   L G
Sbjct: 405 NFTSQLIFNPLYAWSIANVAWKYAAGIPFFVNAGIAVIPFILLG 448


>SB_10083| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1457

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 33  YSAPLFNIFS--FTGLTAIRSIATKSVPTEEVAKLSALIGVTESLAPSIYMPASSYIYMS 90
           Y + L NIF     GL+    +         V +   L+ + + + P  Y        M+
Sbjct: 513 YLSQLQNIFDGFVVGLSVTELLLENGYARLSVFRSIRLLRIFKLVRPVRYQLLVVIRTMT 572

Query: 91  TIETFPGAFYLFDAALTVVALCLFG 115
           ++ TF G  +LF  A  ++ + LFG
Sbjct: 573 SVVTFFGLLFLFMFAFAILGMNLFG 597


>SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 542

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 13  GVSRIAGCLMFALAPTRQWFYSAPLFNIFSFTGLTAIRSIATKSV-PTEEVAKLSALIGV 71
           G+S ++    + LAP   +F     F +  F  L  +RS+        E++ KL   IGV
Sbjct: 369 GLSDVSALRGYVLAPLFVYFIIGATFLLAGFISLFRVRSVLKDDYSKREKIEKLMIRIGV 428

Query: 72  TESL--APSIYMPASSYIYMSTIETFPGAF 99
              L   P++ +    Y   S  E +  ++
Sbjct: 429 FSILYTVPALVVIGCLYYEQSNRELWDNSW 458


>SB_12930| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 17 IAGCLMFALAPTRQWFYSAPLFNIFSFT-GLTAIRSIATKSVPTEEVAK-LSALIGVTES 74
          ++GC+ ++  P   W+ +  L  + S + G+T     A+   P   ++K LS   GVT S
Sbjct: 4  VSGCVTYSAKPASPWWPNVILSKVLSVSRGVTYSAKPASPWWPNVILSKVLSVSRGVTYS 63

Query: 75 LAPS 78
            P+
Sbjct: 64 AKPA 67


>SB_11254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 77  PSIYMPASSYIYMSTIETFPGAFYLFDAALTVVAL 111
           PS   PAS  +Y S+  T P + YL D+   V ++
Sbjct: 39  PSNNRPASPEVYESSTATSPKSLYLQDSRFQVTSI 73


>SB_29556| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 712

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 8/88 (9%)

Query: 33  YSAPLFNIFSFTGLTAIRSIATKSVPTEEVAKLSA-----LIGVTESLAPSIYMPASSYI 87
           Y + L NIF   G   + S+ T+ +     A+LS      L+ + + + P  Y       
Sbjct: 256 YLSQLQNIFD--GFVVVLSV-TELLLENGYARLSVFRSIRLLRIFKLVRPVRYQLLVVIR 312

Query: 88  YMSTIETFPGAFYLFDAALTVVALCLFG 115
            M+++ TF G  +LF  A  ++ + LFG
Sbjct: 313 TMTSVVTFFGLLFLFMFAFAILGMNLFG 340


>SB_9683| Best HMM Match : RCSD (HMM E-Value=2.8)
          Length = 232

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 12/46 (26%), Positives = 22/46 (47%)

Query: 51  SIATKSVPTEEVAKLSALIGVTESLAPSIYMPASSYIYMSTIETFP 96
           S +TK++P  +   LS    V   + P+     +S++ M T +  P
Sbjct: 121 SSSTKNIPASKSQTLSTRETVASEIMPTSTRTTTSHVVMPTTQVLP 166


>SB_49799| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 44  TGLTAIRSIATKSVPTEEVAKLSALIGVTESLAPSIYMPASSYIYMSTIETFPGAFYLFD 103
           T L A+   A  SV ++ +    AL+G+T     ++++  S Y+  S  E     ++   
Sbjct: 259 TPLQALMHSANPSV-SQTIVSPQALVGLTSISFEAMFLAVSGYLDDSVDEHMFARWFSSG 317

Query: 104 AALTVVALCLFG 115
             L +++L  FG
Sbjct: 318 LVLIIMSLGEFG 329


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 13/33 (39%), Positives = 24/33 (72%), Gaps = 2/33 (6%)

Query: 62   VAKLSALIGVTESLAPSIYMPASSYIYMSTIET 94
            ++K SA+  VT ++AP++ MPAS+ +  S++ T
Sbjct: 1129 ISKPSAM--VTCTVAPNVAMPASTVVNTSSLPT 1159


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.326    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,055,352
Number of Sequences: 59808
Number of extensions: 96508
Number of successful extensions: 212
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 11
length of query: 115
length of database: 16,821,457
effective HSP length: 73
effective length of query: 42
effective length of database: 12,455,473
effective search space: 523129866
effective search space used: 523129866
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)