GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001909-TA|BGIBMGA001909-PA|undefined
         (115 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical ...    44   3e-05
AL021474-3|CAD54163.1|  519|Caenorhabditis elegans Hypothetical ...    27   2.5  
U28737-2|AAA68272.1|  455|Caenorhabditis elegans Patterned expre...    27   3.3  
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    26   5.7  
Z81557-8|CAB04538.1|  421|Caenorhabditis elegans Hypothetical pr...    25   10.0 
U40945-2|AAA81720.1|  445|Caenorhabditis elegans Hypothetical pr...    25   10.0 

>AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical
           protein Y4C6B.5 protein.
          Length = 469

 Score = 44.0 bits (99), Expect = 3e-05
 Identities = 23/111 (20%), Positives = 48/111 (43%)

Query: 3   VQDSIIGALAGVSRIAGCLMFALAPTRQWFYSAPLFNIFSFTGLTAIRSIATKSVPTEEV 62
           + D ++  L    ++    MFA        YS  +  +F+    T  R+  +  +  +E 
Sbjct: 321 MSDGMLATLGLFFKMISLFMFAFLQNEVMAYSIAVIVMFNRFVSTGFRAFISSLIDMQEQ 380

Query: 63  AKLSALIGVTESLAPSIYMPASSYIYMSTIETFPGAFYLFDAALTVVALCL 113
            K+ ++I + E +   +     + +Y +T+  FPG  YL  A   ++ L +
Sbjct: 381 GKIFSVISLLEGITTLVATSIYNNVYPNTLTFFPGLLYLISAVTLLIPLAI 431


>AL021474-3|CAD54163.1|  519|Caenorhabditis elegans Hypothetical
           protein Y32F6A.4 protein.
          Length = 519

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 15/49 (30%), Positives = 24/49 (48%)

Query: 65  LSALIGVTESLAPSIYMPASSYIYMSTIETFPGAFYLFDAALTVVALCL 113
           +S  I VT+ +   +Y+  +S   M+ I  F G    F   + +VA CL
Sbjct: 144 VSICIDVTQFMISVVYLLLASKNIMNMIIAFSGTHISFCILILIVATCL 192


>U28737-2|AAA68272.1|  455|Caenorhabditis elegans Patterned
           expression site protein23 protein.
          Length = 455

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 3   VQDSIIGALAGVSRIAGCLMFALAPTRQWFYSAPLFNIFS 42
           V+ +I GA + +SR++G L   +   +Q +  APLF  F+
Sbjct: 380 VRGTISGACSFLSRLSGILASKMTIVKQRWEPAPLFIAFA 419


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical protein
            F11A10.4 protein.
          Length = 1646

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 51   SIATKSVPTEEVAKLSALIGVTESLAPSIYMPASSYIYMSTIETFPGAFYLFDAALTV 108
            S+   S       ++++      SLAP IY+P  S++  + +  FP  F     ++TV
Sbjct: 1179 SVNADSKSISSTPRMNSSSSSLASLAPGIYVPGPSHL-TAILHVFPPLFDKVAKSITV 1235


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical protein
            F11A10.4 protein.
          Length = 1646

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 51   SIATKSVPTEEVAKLSALIGVTESLAPSIYMPASSYIYMSTIETFPGAFYLFDAALTV 108
            S+   S       ++++      SLAP IY+P  S++  + +  FP  F     ++TV
Sbjct: 1179 SVNADSKSISSTPRMNSSSSSLASLAPGIYVPGPSHL-TAILHVFPPLFDKVAKSITV 1235


>Z81557-8|CAB04538.1|  421|Caenorhabditis elegans Hypothetical
           protein F59A1.13 protein.
          Length = 421

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 2/69 (2%)

Query: 46  LTAIRSIATKSVPTEEVAKLSALIGVTESLAPSIYMPASSYIYMSTIETFPGAFYLFDAA 105
           +T +  I     PT E     A++     L+  I MP S ++  S    +   +Y+F  +
Sbjct: 108 MTVVGVIPGTWAPTSETGTFMAILSCVFQLSMIICMPVSGFLCESRF-GWRSIYYIFGGS 166

Query: 106 LTVVALCLF 114
            T++   +F
Sbjct: 167 -TIIFYAIF 174


>U40945-2|AAA81720.1|  445|Caenorhabditis elegans Hypothetical
           protein F10D7.2 protein.
          Length = 445

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)

Query: 9   GALAGVSRIAGCLMFALAP 27
           G LAG+ R  GCL  AL P
Sbjct: 385 GVLAGIFRSLGCLARALGP 403


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.326    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,022
Number of Sequences: 27539
Number of extensions: 79512
Number of successful extensions: 228
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 8
length of query: 115
length of database: 12,573,161
effective HSP length: 72
effective length of query: 43
effective length of database: 10,590,353
effective search space: 455385179
effective search space used: 455385179
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)