GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001909-TA|BGIBMGA001909-PA|undefined
         (115 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr...    29   1.0  
At2g38650.1 68415.m04747 glycosyl transferase family 8 protein c...    28   1.3  
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica...    26   5.4  
At5g35890.1 68418.m04310 hypothetical protein                          26   7.1  
At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identi...    25   9.4  
At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containi...    25   9.4  

>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 895

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 35  APLFNIFSFTGLTAIRSIATKSVPTEEVAKLSALIGVTESLA--PSIYMPASSYIYM 89
           +P    +SF GLT + S      P   V K + ++   ESL+   S++ P   YI +
Sbjct: 216 SPFHASWSFNGLTKLNSFNITENPPASVLKTARILARKESLSYTLSLHTPGDYYIIL 272


>At2g38650.1 68415.m04747 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 619

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 64  KLSALIGVTESLAPSIYMPASSYIYMSTIETFPGAFYLFDAALTV 108
           KL  ++ +TE  A S +M  S ++Y   ++T P + +     LTV
Sbjct: 261 KLRQILDLTEDEA-SFHMKQSVFLYQLAVQTMPKSLHCLSMRLTV 304


>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           similar to RUSH-1alpha [Oryctolagus cuniculus]
           GI:1655930; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1226

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)

Query: 38  FNIFSFTGLTAIRSIATKSVP-TEEVAKLSALIGVTESLAPSIYMPASSYIYMSTIET 94
           FN+ SF+  T + S+++K +P  E+ +++  +    E + P  Y+P    ++ S   T
Sbjct: 439 FNLSSFSSGT-VESLSSKRIPEREDDSEIHKIESYGEFVNPHQYLPVQRPVFSSEHST 495


>At5g35890.1 68418.m04310 hypothetical protein 
          Length = 287

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 3/41 (7%)

Query: 33 YSAPLFNIFS-FTGLTAIRSIATKSV--PTEEVAKLSALIG 70
          Y  P+    S F+ L   RS+  KS+  P E +++LSALIG
Sbjct: 31 YLQPILGFGSPFSPLVWPRSVTLKSLISPLELISRLSALIG 71


>At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identical
           to gi:1742956
          Length = 779

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 9   GALAGVSRI----AGCLMFALAPTRQWFYSAPLFNIFSFTGLTAI 49
           GA AGV+       G ++FAL     W+ +A L+  F  T + A+
Sbjct: 257 GAAAGVAAAFRAPVGGVLFALEEAASWWRNALLWRTFFTTAVVAV 301


>At5g14770.1 68418.m01733 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 938

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 41  FSFTGLTAIRSIATKSVPTEEVAKLSALIGVTESLAPSIYMPASSYIYMSTIETFPGAFY 100
           F  +   +  SI    +P  E   LS    +T+        P  + +Y+S   T    + 
Sbjct: 14  FFLSNCRSFSSIKRPQIPESEETSLS----ITQRRFDPDLAPIKTRVYVSLFHTLFRLYL 69

Query: 101 ----LFDAALTVVALCLFG 115
               L+ AA T+ A+C FG
Sbjct: 70  SCERLYGAARTLSAMCTFG 88


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.326    0.136    0.399 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,253,578
Number of Sequences: 28952
Number of extensions: 74212
Number of successful extensions: 241
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 6
length of query: 115
length of database: 12,070,560
effective HSP length: 72
effective length of query: 43
effective length of database: 9,986,016
effective search space: 429398688
effective search space used: 429398688
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)