GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001908-TA|BGIBMGA001908-PA|IPR011701|Major facilitator
superfamily MFS_1
         (293 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    35   0.016
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    29   0.79 
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    28   1.4  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    27   4.2  
SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces po...    26   7.3  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    26   7.3  

>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 34/128 (26%), Positives = 53/128 (41%), Gaps = 6/128 (4%)

Query: 109 VAKVVAWKFPLQTIIPAIMVIFVGAWSDKYKKRKIC-IVFPFIGEILSNTGLLFATYYFQ 167
           V+KV A    L   +      + G   D Y +R +  I   F+  +L +  LL+ +Y  +
Sbjct: 185 VSKVRAAFGSLAAFLGLFSTAYYGTMGDIYGRRLVLFITVSFL--LLGDLWLLYQSYAPK 242

Query: 168 ELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGT 227
                   L  A      G    +     SF+AD +  E R + LGL      LGT  G 
Sbjct: 243 HPYFV---LFAAALKGLGGYISTVVASQNSFVADCSKTEFRAWYLGLNFAAYHLGTALGP 299

Query: 228 ALSGILLR 235
           +LSG +++
Sbjct: 300 SLSGFIVQ 307


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 11/40 (27%), Positives = 23/40 (57%)

Query: 84  DDICDRLRLRNTTGLDEEVNNVQSLVAKVVAWKFPLQTII 123
           ++ICD L    +   + +VN+V+ + A++  WK  L + +
Sbjct: 458 NEICDSLYWNPSPSFESQVNSVRRIYARLELWKSDLHSSV 497


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 151 GEILSNTGLLFATYYFQELSLTATA-LIEALPAAFTGSYVIIFMGMYS 197
           G I+++  L+F  Y   E +L A   L E +   F G Y+++ MG++S
Sbjct: 417 GAIMASVALMFVLY---EKTLGAKKDLDEIVGMVFYGRYIVLLMGLFS 461


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 78   VNFNYGDDICDRLRLRNTTGLDEEVNNVQSLVAK 111
            V F+YG+D  D  + ++ T  +    N +SL+ K
Sbjct: 1059 VQFHYGEDSLDVTKQKHLTQFEFSAKNYKSLIQK 1092


>SPAC19B12.06c |||rhomboid family protease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/35 (31%), Positives = 20/35 (57%)

Query: 98  LDEEVNNVQSLVAKVVAWKFPLQTIIPAIMVIFVG 132
           L E ++     +A++   K PL T+I A++ I +G
Sbjct: 5   LGERISTSVGFLAELFLMKIPLFTVIVALLTIILG 39


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/49 (30%), Positives = 23/49 (46%)

Query: 162 ATYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTF 210
           ATY+   L  T   L+     +F   + +IF G+ +F A+ T    R F
Sbjct: 307 ATYFAIRLGHTVAFLMFPFMLSFLLVFWVIFEGVCNFSAEITRFADRNF 355


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,075,475
Number of Sequences: 5004
Number of extensions: 37902
Number of successful extensions: 105
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 100
Number of HSP's gapped (non-prelim): 6
length of query: 293
length of database: 2,362,478
effective HSP length: 72
effective length of query: 221
effective length of database: 2,002,190
effective search space: 442483990
effective search space used: 442483990
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 53 (25.4 bits)