BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001908-TA|BGIBMGA001908-PA|IPR011701|Major facilitator superfamily MFS_1 (293 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051) 90 2e-18 SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24) 55 8e-08 SB_57014| Best HMM Match : PMP22_Claudin (HMM E-Value=4.6) 48 9e-06 SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06 SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04 SB_49164| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007 SB_13129| Best HMM Match : PUCC (HMM E-Value=0.013) 31 0.84 SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20) 28 7.8 >SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051) Length = 446 Score = 89.8 bits (213), Expect = 2e-18 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 14/193 (7%) Query: 44 LRETTVEPCLFMYMMCTSISSLAVQSMHLEKACRVNFNYGDDICDRLRLRNTTGLDEEVN 103 ++ TVEP LF+YM CT +SS +Q + K C+ ++N C+ N + E N Sbjct: 7 MKSITVEPVLFLYMFCTFMSSPLLQQLAYRKICKEHYN--TSACN-----NLSDYQNEQN 59 Query: 104 NVQSLVAKVVAWKFPLQTIIPAI-MVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFA 162 VQ+ + + ++ L +P+I + +GAWSD+ RK ++ P +G IL N + Sbjct: 60 YVQTSTSNWMRYQ-ALALALPSIASSLVLGAWSDRV-GRKAIMILPPVGNILMNINYMLN 117 Query: 163 TYYFQELSLTATALIEALPAAFT-GSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTL 221 ++F SL LI + A T G + + ++S+MAD T RT R+ ++ V L Sbjct: 118 VHFF---SLNVNYLIIGIVIAGTFGGFATTLLSVFSYMADITDKSHRTLRISILESMVFL 174 Query: 222 GTPTGTALSGILL 234 G G ++G++L Sbjct: 175 GGSVGELVAGVML 187 >SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24) Length = 1193 Score = 54.8 bits (126), Expect = 8e-08 Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 12/176 (6%) Query: 48 TVEPCLFMYMMCTSISSLAVQS---MHLEKACRVNFNYGDD----ICDRLRLRNTTGLDE 100 TVEP +F Y + +Q L + + + Y + C+ +++ N++ Sbjct: 40 TVEPVIFCYAFGIILHVPVIQQYIHQRLSEGKGLTYEYNNTDSRTTCEPIQMANSSEETL 99 Query: 101 EVNNVQSLVAKVVAWKFPLQTIIPAIMV-IFVGAWSDKYKKRKICIVFPFIGEILSNTGL 159 E+ A + L P+++V + +GAWSD+ +R+ + P G + + + Sbjct: 100 ELQKEVQAEASYMQMGLVLSVSTPSLLVALLLGAWSDRAGRRR-AMAMPIFGSAVESAII 158 Query: 160 LFATYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLV 215 L Y+ EL +T L E + + G + + + ++S++AD T R FRLG++ Sbjct: 159 LVIMYF--ELPVTFLLLAEFINGS-CGFFPTMVLSVFSYIADITEESQRAFRLGIL 211 >SB_57014| Best HMM Match : PMP22_Claudin (HMM E-Value=4.6) Length = 177 Score = 48.0 bits (109), Expect = 9e-06 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 11/170 (6%) Query: 48 TVEPCLFMYMMCTSISSLAVQSMHLEK-ACRVNFNYGDDICDRLRLRNTTGLDEEVNNVQ 106 T+EP +F+Y+ + +Q K A + F Y D N T + ++N++ Sbjct: 13 TIEPVIFLYVYGILMHGPVIQQFVYSKIAKQKGFFY--DPSSHTGCGNETRYNSTLHNLE 70 Query: 107 SLVAKVVAWK---FPLQTIIPAIMV-IFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFA 162 V A+ + +P+I++ + VG+WSD + RK I+ P IG +L +L Sbjct: 71 QEVQATAAYVQIGITMFESLPSIVLSLMVGSWSDCHG-RKPAILLPVIGSMLEAVCVLIV 129 Query: 163 TYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRL 212 Y ++ + I AL +G + MG+ +++AD T R RL Sbjct: 130 MYCDLDVYVL---FIGALLNGCSGYLPTLLMGIMAYIADSTDESQRALRL 176 >SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 509 Score = 48.0 bits (109), Expect = 9e-06 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 11/194 (5%) Query: 45 RETTVEPCLFMYMMCTSISSLAVQSMHLEKACR---VNFNYGDDICDRLRLRNTTGLDEE 101 R TVE +F Y+ + +Q E+A + +N IC L N+TG Sbjct: 16 RAVTVEITIFFYIAGMILELPVLQQYLYERAAKELKINNTSNTTICSPNDL-NSTGQSAN 74 Query: 102 VNNVQSLVAKVVAWKFPLQTIIPAIMVI-FVGAWSDKYKKRKICIVFPFIGEILSNTGLL 160 + ++A+ LQ +PA++ +G WSDK ++ + ++ F G I+ + L Sbjct: 75 DAVQEKASQYILAYNLALQ--LPAVLTACLLGTWSDKNGRKPLMLIVAF-GAIVDASVAL 131 Query: 161 FATYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVT 220 F Y L +I G Y + + + +++AD T E R +L ++ Sbjct: 132 FTVYTDGPLY---PLIIGGGINGVMGFYPTMVLALLAYIADTTPPERRAIKLAVLEALAF 188 Query: 221 LGTPTGTALSGILL 234 L G SGI + Sbjct: 189 LSGTLGHFSSGIYI 202 >SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1277 Score = 42.7 bits (96), Expect = 3e-04 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 5/188 (2%) Query: 49 VEPCLFMYMMCTSISSLAVQSMHLEKACRVN-FNYGDDICDRLRLRNTTGLDEEVNNVQS 107 VEP LF + +S +Q + N F Y + + N + + VQ Sbjct: 17 VEPVLFFWAFGLFMSVPILQQYVYFRISEDNGFPYSAERETGCQAGNDSDMAALERKVQD 76 Query: 108 LVAKVVAWKFPLQTIIPAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQ 167 A+ + +I I+ + +G W+D RK IV P IG +L + L Y Sbjct: 77 SAARYDIGNVMIMSIPSVIVSLMLGPWTDT-AGRKRAIVAPAIGSLLESINTLLVMYLKW 135 Query: 168 ELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGT 227 + + + + F+G + ++ +++AD T + RL ++ + + +G Sbjct: 136 PILVL---FVGSAFTGFSGFFTVMTQASMAYIADTTPEQQVALRLAIMQLMLLIGGLVSQ 192 Query: 228 ALSGILLR 235 +G LR Sbjct: 193 LTTGPWLR 200 >SB_49164| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 457 Score = 38.3 bits (85), Expect = 0.007 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 4/128 (3%) Query: 105 VQSLVAKVVAWKFPLQTIIPAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATY 164 VQS +++ + + + + +V F G+++D+ + RK ++ P +G IL L+ Y Sbjct: 90 VQSASSELYLYYLGVWALSISFIVPFTGSYTDR-RGRKPGLIAPLVGAILETLVLVLVLY 148 Query: 165 YFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTP 224 EL + ++ L TG+ + M ++ D T + + FRL ++ + Sbjct: 149 L--ELPVYVL-IVGGLVNGLTGNEATMMMATTCYVTDTTDDKQKAFRLSILQGVLFFSAT 205 Query: 225 TGTALSGI 232 SG+ Sbjct: 206 VSQLTSGL 213 >SB_13129| Best HMM Match : PUCC (HMM E-Value=0.013) Length = 347 Score = 31.5 bits (68), Expect = 0.84 Identities = 12/50 (24%), Positives = 28/50 (56%) Query: 186 GSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSGILLR 235 GS+ + +++++D T ++ R R+G++ + +G +SGI +R Sbjct: 18 GSFSCVMFSGFAYLSDITDIKKRGVRIGILESVIYVGATASFFISGIWVR 67 >SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20) Length = 279 Score = 28.3 bits (60), Expect = 7.8 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 6/125 (4%) Query: 65 LAVQSMHLEKACRVNFNYGDDICDRLRLRNTTGLDEEVNNVQSLVAKVVAWKFPLQTIIP 124 LA+ ++ L N N DI + N T E + ++ L+ + W L T + Sbjct: 106 LALTALLLAAKFDENENQIPDISTLNKFVNNTYQHAEYHQMELLLLEFFNWNIDLPTPVQ 165 Query: 125 AIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSLTATALIEALPAAF 184 + A D YK+ ++ I + ++T L YYF E+S + P+ Sbjct: 166 FLEYYLAKATID-YKESEMTIDYK-----KTSTYLRKYVYYFLEISFQDHTFLSFSPSLI 219 Query: 185 TGSYV 189 T S + Sbjct: 220 TSSCI 224 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.325 0.136 0.398 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,569,363 Number of Sequences: 59808 Number of extensions: 252832 Number of successful extensions: 755 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 2 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 748 Number of HSP's gapped (non-prelim): 8 length of query: 293 length of database: 16,821,457 effective HSP length: 82 effective length of query: 211 effective length of database: 11,917,201 effective search space: 2514529411 effective search space used: 2514529411 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.6 bits) S2: 60 (28.3 bits)
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