Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001908-TA|BGIBMGA001908-PA|IPR011701|Major facilitator
superfamily MFS_1
(293 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051) 90 2e-18
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24) 55 8e-08
SB_57014| Best HMM Match : PMP22_Claudin (HMM E-Value=4.6) 48 9e-06
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 9e-06
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 3e-04
SB_49164| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_13129| Best HMM Match : PUCC (HMM E-Value=0.013) 31 0.84
SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20) 28 7.8
>SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)
Length = 446
Score = 89.8 bits (213), Expect = 2e-18
Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 14/193 (7%)
Query: 44 LRETTVEPCLFMYMMCTSISSLAVQSMHLEKACRVNFNYGDDICDRLRLRNTTGLDEEVN 103
++ TVEP LF+YM CT +SS +Q + K C+ ++N C+ N + E N
Sbjct: 7 MKSITVEPVLFLYMFCTFMSSPLLQQLAYRKICKEHYN--TSACN-----NLSDYQNEQN 59
Query: 104 NVQSLVAKVVAWKFPLQTIIPAI-MVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFA 162
VQ+ + + ++ L +P+I + +GAWSD+ RK ++ P +G IL N +
Sbjct: 60 YVQTSTSNWMRYQ-ALALALPSIASSLVLGAWSDRV-GRKAIMILPPVGNILMNINYMLN 117
Query: 163 TYYFQELSLTATALIEALPAAFT-GSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTL 221
++F SL LI + A T G + + ++S+MAD T RT R+ ++ V L
Sbjct: 118 VHFF---SLNVNYLIIGIVIAGTFGGFATTLLSVFSYMADITDKSHRTLRISILESMVFL 174
Query: 222 GTPTGTALSGILL 234
G G ++G++L
Sbjct: 175 GGSVGELVAGVML 187
>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
Length = 1193
Score = 54.8 bits (126), Expect = 8e-08
Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 12/176 (6%)
Query: 48 TVEPCLFMYMMCTSISSLAVQS---MHLEKACRVNFNYGDD----ICDRLRLRNTTGLDE 100
TVEP +F Y + +Q L + + + Y + C+ +++ N++
Sbjct: 40 TVEPVIFCYAFGIILHVPVIQQYIHQRLSEGKGLTYEYNNTDSRTTCEPIQMANSSEETL 99
Query: 101 EVNNVQSLVAKVVAWKFPLQTIIPAIMV-IFVGAWSDKYKKRKICIVFPFIGEILSNTGL 159
E+ A + L P+++V + +GAWSD+ +R+ + P G + + +
Sbjct: 100 ELQKEVQAEASYMQMGLVLSVSTPSLLVALLLGAWSDRAGRRR-AMAMPIFGSAVESAII 158
Query: 160 LFATYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLV 215
L Y+ EL +T L E + + G + + + ++S++AD T R FRLG++
Sbjct: 159 LVIMYF--ELPVTFLLLAEFINGS-CGFFPTMVLSVFSYIADITEESQRAFRLGIL 211
>SB_57014| Best HMM Match : PMP22_Claudin (HMM E-Value=4.6)
Length = 177
Score = 48.0 bits (109), Expect = 9e-06
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 11/170 (6%)
Query: 48 TVEPCLFMYMMCTSISSLAVQSMHLEK-ACRVNFNYGDDICDRLRLRNTTGLDEEVNNVQ 106
T+EP +F+Y+ + +Q K A + F Y D N T + ++N++
Sbjct: 13 TIEPVIFLYVYGILMHGPVIQQFVYSKIAKQKGFFY--DPSSHTGCGNETRYNSTLHNLE 70
Query: 107 SLVAKVVAWK---FPLQTIIPAIMV-IFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFA 162
V A+ + +P+I++ + VG+WSD + RK I+ P IG +L +L
Sbjct: 71 QEVQATAAYVQIGITMFESLPSIVLSLMVGSWSDCHG-RKPAILLPVIGSMLEAVCVLIV 129
Query: 163 TYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRL 212
Y ++ + I AL +G + MG+ +++AD T R RL
Sbjct: 130 MYCDLDVYVL---FIGALLNGCSGYLPTLLMGIMAYIADSTDESQRALRL 176
>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 509
Score = 48.0 bits (109), Expect = 9e-06
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 11/194 (5%)
Query: 45 RETTVEPCLFMYMMCTSISSLAVQSMHLEKACR---VNFNYGDDICDRLRLRNTTGLDEE 101
R TVE +F Y+ + +Q E+A + +N IC L N+TG
Sbjct: 16 RAVTVEITIFFYIAGMILELPVLQQYLYERAAKELKINNTSNTTICSPNDL-NSTGQSAN 74
Query: 102 VNNVQSLVAKVVAWKFPLQTIIPAIMVI-FVGAWSDKYKKRKICIVFPFIGEILSNTGLL 160
+ ++A+ LQ +PA++ +G WSDK ++ + ++ F G I+ + L
Sbjct: 75 DAVQEKASQYILAYNLALQ--LPAVLTACLLGTWSDKNGRKPLMLIVAF-GAIVDASVAL 131
Query: 161 FATYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVT 220
F Y L +I G Y + + + +++AD T E R +L ++
Sbjct: 132 FTVYTDGPLY---PLIIGGGINGVMGFYPTMVLALLAYIADTTPPERRAIKLAVLEALAF 188
Query: 221 LGTPTGTALSGILL 234
L G SGI +
Sbjct: 189 LSGTLGHFSSGIYI 202
>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1277
Score = 42.7 bits (96), Expect = 3e-04
Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 5/188 (2%)
Query: 49 VEPCLFMYMMCTSISSLAVQSMHLEKACRVN-FNYGDDICDRLRLRNTTGLDEEVNNVQS 107
VEP LF + +S +Q + N F Y + + N + + VQ
Sbjct: 17 VEPVLFFWAFGLFMSVPILQQYVYFRISEDNGFPYSAERETGCQAGNDSDMAALERKVQD 76
Query: 108 LVAKVVAWKFPLQTIIPAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQ 167
A+ + +I I+ + +G W+D RK IV P IG +L + L Y
Sbjct: 77 SAARYDIGNVMIMSIPSVIVSLMLGPWTDT-AGRKRAIVAPAIGSLLESINTLLVMYLKW 135
Query: 168 ELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGT 227
+ + + + F+G + ++ +++AD T + RL ++ + + +G
Sbjct: 136 PILVL---FVGSAFTGFSGFFTVMTQASMAYIADTTPEQQVALRLAIMQLMLLIGGLVSQ 192
Query: 228 ALSGILLR 235
+G LR
Sbjct: 193 LTTGPWLR 200
>SB_49164| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 457
Score = 38.3 bits (85), Expect = 0.007
Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 105 VQSLVAKVVAWKFPLQTIIPAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATY 164
VQS +++ + + + + +V F G+++D+ + RK ++ P +G IL L+ Y
Sbjct: 90 VQSASSELYLYYLGVWALSISFIVPFTGSYTDR-RGRKPGLIAPLVGAILETLVLVLVLY 148
Query: 165 YFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTP 224
EL + ++ L TG+ + M ++ D T + + FRL ++ +
Sbjct: 149 L--ELPVYVL-IVGGLVNGLTGNEATMMMATTCYVTDTTDDKQKAFRLSILQGVLFFSAT 205
Query: 225 TGTALSGI 232
SG+
Sbjct: 206 VSQLTSGL 213
>SB_13129| Best HMM Match : PUCC (HMM E-Value=0.013)
Length = 347
Score = 31.5 bits (68), Expect = 0.84
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 186 GSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSGILLR 235
GS+ + +++++D T ++ R R+G++ + +G +SGI +R
Sbjct: 18 GSFSCVMFSGFAYLSDITDIKKRGVRIGILESVIYVGATASFFISGIWVR 67
>SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)
Length = 279
Score = 28.3 bits (60), Expect = 7.8
Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 6/125 (4%)
Query: 65 LAVQSMHLEKACRVNFNYGDDICDRLRLRNTTGLDEEVNNVQSLVAKVVAWKFPLQTIIP 124
LA+ ++ L N N DI + N T E + ++ L+ + W L T +
Sbjct: 106 LALTALLLAAKFDENENQIPDISTLNKFVNNTYQHAEYHQMELLLLEFFNWNIDLPTPVQ 165
Query: 125 AIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSLTATALIEALPAAF 184
+ A D YK+ ++ I + ++T L YYF E+S + P+
Sbjct: 166 FLEYYLAKATID-YKESEMTIDYK-----KTSTYLRKYVYYFLEISFQDHTFLSFSPSLI 219
Query: 185 TGSYV 189
T S +
Sbjct: 220 TSSCI 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.325 0.136 0.398
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,569,363
Number of Sequences: 59808
Number of extensions: 252832
Number of successful extensions: 755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 8
length of query: 293
length of database: 16,821,457
effective HSP length: 82
effective length of query: 211
effective length of database: 11,917,201
effective search space: 2514529411
effective search space used: 2514529411
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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