SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001908-TA|BGIBMGA001908-PA|IPR011701|Major facilitator
superfamily MFS_1
         (293 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)                 90   2e-18
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)                 55   8e-08
SB_57014| Best HMM Match : PMP22_Claudin (HMM E-Value=4.6)             48   9e-06
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   9e-06
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   3e-04
SB_49164| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_13129| Best HMM Match : PUCC (HMM E-Value=0.013)                    31   0.84 
SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)               28   7.8  

>SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)
          Length = 446

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 59/193 (30%), Positives = 99/193 (51%), Gaps = 14/193 (7%)

Query: 44  LRETTVEPCLFMYMMCTSISSLAVQSMHLEKACRVNFNYGDDICDRLRLRNTTGLDEEVN 103
           ++  TVEP LF+YM CT +SS  +Q +   K C+ ++N     C+     N +    E N
Sbjct: 7   MKSITVEPVLFLYMFCTFMSSPLLQQLAYRKICKEHYN--TSACN-----NLSDYQNEQN 59

Query: 104 NVQSLVAKVVAWKFPLQTIIPAI-MVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFA 162
            VQ+  +  + ++  L   +P+I   + +GAWSD+   RK  ++ P +G IL N   +  
Sbjct: 60  YVQTSTSNWMRYQ-ALALALPSIASSLVLGAWSDRV-GRKAIMILPPVGNILMNINYMLN 117

Query: 163 TYYFQELSLTATALIEALPAAFT-GSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTL 221
            ++F   SL    LI  +  A T G +    + ++S+MAD T    RT R+ ++   V L
Sbjct: 118 VHFF---SLNVNYLIIGIVIAGTFGGFATTLLSVFSYMADITDKSHRTLRISILESMVFL 174

Query: 222 GTPTGTALSGILL 234
           G   G  ++G++L
Sbjct: 175 GGSVGELVAGVML 187


>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
          Length = 1193

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 41/176 (23%), Positives = 81/176 (46%), Gaps = 12/176 (6%)

Query: 48  TVEPCLFMYMMCTSISSLAVQS---MHLEKACRVNFNYGDD----ICDRLRLRNTTGLDE 100
           TVEP +F Y     +    +Q      L +   + + Y +      C+ +++ N++    
Sbjct: 40  TVEPVIFCYAFGIILHVPVIQQYIHQRLSEGKGLTYEYNNTDSRTTCEPIQMANSSEETL 99

Query: 101 EVNNVQSLVAKVVAWKFPLQTIIPAIMV-IFVGAWSDKYKKRKICIVFPFIGEILSNTGL 159
           E+       A  +     L    P+++V + +GAWSD+  +R+  +  P  G  + +  +
Sbjct: 100 ELQKEVQAEASYMQMGLVLSVSTPSLLVALLLGAWSDRAGRRR-AMAMPIFGSAVESAII 158

Query: 160 LFATYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLV 215
           L   Y+  EL +T   L E +  +  G +  + + ++S++AD T    R FRLG++
Sbjct: 159 LVIMYF--ELPVTFLLLAEFINGS-CGFFPTMVLSVFSYIADITEESQRAFRLGIL 211


>SB_57014| Best HMM Match : PMP22_Claudin (HMM E-Value=4.6)
          Length = 177

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 11/170 (6%)

Query: 48  TVEPCLFMYMMCTSISSLAVQSMHLEK-ACRVNFNYGDDICDRLRLRNTTGLDEEVNNVQ 106
           T+EP +F+Y+    +    +Q     K A +  F Y  D        N T  +  ++N++
Sbjct: 13  TIEPVIFLYVYGILMHGPVIQQFVYSKIAKQKGFFY--DPSSHTGCGNETRYNSTLHNLE 70

Query: 107 SLVAKVVAWK---FPLQTIIPAIMV-IFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFA 162
             V    A+      +   +P+I++ + VG+WSD +  RK  I+ P IG +L    +L  
Sbjct: 71  QEVQATAAYVQIGITMFESLPSIVLSLMVGSWSDCHG-RKPAILLPVIGSMLEAVCVLIV 129

Query: 163 TYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRL 212
            Y   ++ +     I AL    +G    + MG+ +++AD T    R  RL
Sbjct: 130 MYCDLDVYVL---FIGALLNGCSGYLPTLLMGIMAYIADSTDESQRALRL 176


>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 48.0 bits (109), Expect = 9e-06
 Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 11/194 (5%)

Query: 45  RETTVEPCLFMYMMCTSISSLAVQSMHLEKACR---VNFNYGDDICDRLRLRNTTGLDEE 101
           R  TVE  +F Y+    +    +Q    E+A +   +N      IC    L N+TG    
Sbjct: 16  RAVTVEITIFFYIAGMILELPVLQQYLYERAAKELKINNTSNTTICSPNDL-NSTGQSAN 74

Query: 102 VNNVQSLVAKVVAWKFPLQTIIPAIMVI-FVGAWSDKYKKRKICIVFPFIGEILSNTGLL 160
               +     ++A+   LQ  +PA++    +G WSDK  ++ + ++  F G I+  +  L
Sbjct: 75  DAVQEKASQYILAYNLALQ--LPAVLTACLLGTWSDKNGRKPLMLIVAF-GAIVDASVAL 131

Query: 161 FATYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVT 220
           F  Y    L      +I        G Y  + + + +++AD T  E R  +L ++     
Sbjct: 132 FTVYTDGPLY---PLIIGGGINGVMGFYPTMVLALLAYIADTTPPERRAIKLAVLEALAF 188

Query: 221 LGTPTGTALSGILL 234
           L    G   SGI +
Sbjct: 189 LSGTLGHFSSGIYI 202


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 5/188 (2%)

Query: 49  VEPCLFMYMMCTSISSLAVQSMHLEKACRVN-FNYGDDICDRLRLRNTTGLDEEVNNVQS 107
           VEP LF +     +S   +Q     +    N F Y  +     +  N + +      VQ 
Sbjct: 17  VEPVLFFWAFGLFMSVPILQQYVYFRISEDNGFPYSAERETGCQAGNDSDMAALERKVQD 76

Query: 108 LVAKVVAWKFPLQTIIPAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQ 167
             A+       + +I   I+ + +G W+D    RK  IV P IG +L +   L   Y   
Sbjct: 77  SAARYDIGNVMIMSIPSVIVSLMLGPWTDT-AGRKRAIVAPAIGSLLESINTLLVMYLKW 135

Query: 168 ELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGT 227
            + +     + +    F+G + ++     +++AD T  +    RL ++ + + +G     
Sbjct: 136 PILVL---FVGSAFTGFSGFFTVMTQASMAYIADTTPEQQVALRLAIMQLMLLIGGLVSQ 192

Query: 228 ALSGILLR 235
             +G  LR
Sbjct: 193 LTTGPWLR 200


>SB_49164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 38.3 bits (85), Expect = 0.007
 Identities = 28/128 (21%), Positives = 58/128 (45%), Gaps = 4/128 (3%)

Query: 105 VQSLVAKVVAWKFPLQTIIPAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATY 164
           VQS  +++  +   +  +  + +V F G+++D+ + RK  ++ P +G IL    L+   Y
Sbjct: 90  VQSASSELYLYYLGVWALSISFIVPFTGSYTDR-RGRKPGLIAPLVGAILETLVLVLVLY 148

Query: 165 YFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTP 224
              EL +    ++  L    TG+   + M    ++ D T  + + FRL ++   +     
Sbjct: 149 L--ELPVYVL-IVGGLVNGLTGNEATMMMATTCYVTDTTDDKQKAFRLSILQGVLFFSAT 205

Query: 225 TGTALSGI 232
                SG+
Sbjct: 206 VSQLTSGL 213


>SB_13129| Best HMM Match : PUCC (HMM E-Value=0.013)
          Length = 347

 Score = 31.5 bits (68), Expect = 0.84
 Identities = 12/50 (24%), Positives = 28/50 (56%)

Query: 186 GSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSGILLR 235
           GS+  +    +++++D T ++ R  R+G++   + +G      +SGI +R
Sbjct: 18  GSFSCVMFSGFAYLSDITDIKKRGVRIGILESVIYVGATASFFISGIWVR 67


>SB_7241| Best HMM Match : Cyclin_N (HMM E-Value=2.4e-20)
          Length = 279

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 6/125 (4%)

Query: 65  LAVQSMHLEKACRVNFNYGDDICDRLRLRNTTGLDEEVNNVQSLVAKVVAWKFPLQTIIP 124
           LA+ ++ L      N N   DI    +  N T    E + ++ L+ +   W   L T + 
Sbjct: 106 LALTALLLAAKFDENENQIPDISTLNKFVNNTYQHAEYHQMELLLLEFFNWNIDLPTPVQ 165

Query: 125 AIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSLTATALIEALPAAF 184
            +      A  D YK+ ++ I +       ++T L    YYF E+S      +   P+  
Sbjct: 166 FLEYYLAKATID-YKESEMTIDYK-----KTSTYLRKYVYYFLEISFQDHTFLSFSPSLI 219

Query: 185 TGSYV 189
           T S +
Sbjct: 220 TSSCI 224


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,569,363
Number of Sequences: 59808
Number of extensions: 252832
Number of successful extensions: 755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 748
Number of HSP's gapped (non-prelim): 8
length of query: 293
length of database: 16,821,457
effective HSP length: 82
effective length of query: 211
effective length of database: 11,917,201
effective search space: 2514529411
effective search space used: 2514529411
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)

- SilkBase 1999-2023 -