BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001908-TA|BGIBMGA001908-PA|IPR011701|Major facilitator superfamily MFS_1 (293 letters) Database: human 224,733 sequences; 73,234,838 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value DQ496103-1|ABF47092.1| 459|Homo sapiens heme carrier protein 1 ... 36 0.22 BC010691-1|AAH10691.1| 431|Homo sapiens SLC46A1 protein protein. 36 0.22 AK054669-1|BAB70789.1| 459|Homo sapiens protein ( Homo sapiens ... 36 0.22 BC048285-1|AAH48285.1| 475|Homo sapiens solute carrier family 4... 31 6.3 AL139041-1|CAI95196.1| 475|Homo sapiens thymic stromal co-trans... 31 6.3 AK055571-1|BAB70960.1| 475|Homo sapiens protein ( Homo sapiens ... 31 6.3 AF242557-1|AAK28343.1| 475|Homo sapiens thymic stromal co-trans... 31 6.3 >DQ496103-1|ABF47092.1| 459|Homo sapiens heme carrier protein 1 protein. Length = 459 Score = 35.5 bits (78), Expect = 0.22 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 4/106 (3%) Query: 131 VGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSLTATALIEALPAAFTGSYVI 190 +GAWSD +R + +V +G +L L + + Q ++ + A G + Sbjct: 104 LGAWSDSVGRRPL-LVLASLGLLLQ---ALVSVFVVQLQLHVGYFVLGRILCALLGDFGG 159 Query: 191 IFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSGILLRA 236 + ++ +AD ++ SRTFR+ L+ + + + L G LRA Sbjct: 160 LLAASFASVADVSSSRSRTFRMALLEASIGVAGMLASLLGGHWLRA 205 >BC010691-1|AAH10691.1| 431|Homo sapiens SLC46A1 protein protein. Length = 431 Score = 35.5 bits (78), Expect = 0.22 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 4/106 (3%) Query: 131 VGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSLTATALIEALPAAFTGSYVI 190 +GAWSD +R + +V +G +L L + + Q ++ + A G + Sbjct: 104 LGAWSDSVGRRPL-LVLASLGLLLQ---ALVSVFVVQLQLHVGYFVLGRILCALLGDFGG 159 Query: 191 IFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSGILLRA 236 + ++ +AD ++ SRTFR+ L+ + + + L G LRA Sbjct: 160 LLAASFASVADVSSSRSRTFRMALLEASIGVAGMLASLLGGHWLRA 205 >AK054669-1|BAB70789.1| 459|Homo sapiens protein ( Homo sapiens cDNA FLJ30107 fis, clone BNGH41000198, weakly similar to TETRACYCLINE RESISTANCE PROTEIN, CLASS E. ). Length = 459 Score = 35.5 bits (78), Expect = 0.22 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 4/106 (3%) Query: 131 VGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSLTATALIEALPAAFTGSYVI 190 +GAWSD +R + +V +G +L L + + Q ++ + A G + Sbjct: 104 LGAWSDSVGRRPL-LVLASLGLLLQ---ALVSVFVVQLQLHVGYFVLGRILCALLGDFGG 159 Query: 191 IFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSGILLRA 236 + ++ +AD ++ SRTFR+ L+ + + + L G LRA Sbjct: 160 LLAASFASVADVSSSRSRTFRMALLEASIGVAGMLASLLGGHWLRA 205 >BC048285-1|AAH48285.1| 475|Homo sapiens solute carrier family 46, member 2 protein. Length = 475 Score = 30.7 bits (66), Expect = 6.3 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 4/112 (3%) Query: 124 PAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSLTATALIEALPAA 183 P + +G SD+Y RKI I +G +LS GLL + + A AL Sbjct: 89 PLLSAYGLGWLSDRYH-RKISICMSLLGFLLSRLGLLLKVLLDWPVEVLYGA--AALNGL 145 Query: 184 FTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSGILLR 235 F G + + G+ + + ++ R+ RL L+ + + L G+ SG L + Sbjct: 146 F-GGFSAFWSGVMALGSLGSSEGRRSVRLILIDLMLGLAGFCGSMASGHLFK 196 >AL139041-1|CAI95196.1| 475|Homo sapiens thymic stromal co-transporter protein. Length = 475 Score = 30.7 bits (66), Expect = 6.3 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 4/112 (3%) Query: 124 PAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSLTATALIEALPAA 183 P + +G SD+Y RKI I +G +LS GLL + + A AL Sbjct: 89 PLLSAYGLGWLSDRYH-RKISICMSLLGFLLSRLGLLLKVLLDWPVEVLYGA--AALNGL 145 Query: 184 FTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSGILLR 235 F G + + G+ + + ++ R+ RL L+ + + L G+ SG L + Sbjct: 146 F-GGFSAFWSGVMALGSLGSSEGRRSVRLILIDLMLGLAGFCGSMASGHLFK 196 >AK055571-1|BAB70960.1| 475|Homo sapiens protein ( Homo sapiens cDNA FLJ31009 fis, clone HLUNG2000142, moderately similar to Mus musculus putative thymic stromal co-transporter TSCOT mRNA. ). Length = 475 Score = 30.7 bits (66), Expect = 6.3 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 4/112 (3%) Query: 124 PAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSLTATALIEALPAA 183 P + +G SD+Y RKI I +G +LS GLL + + A AL Sbjct: 89 PLLSAYGLGWLSDRYH-RKISICMSLLGFLLSRLGLLLKVLLDWPVEVLYGA--AALNGL 145 Query: 184 FTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSGILLR 235 F G + + G+ + + ++ R+ RL L+ + + L G+ SG L + Sbjct: 146 F-GGFSAFWSGVMALGSLGSSEGRRSVRLILIDLMLGLAGFCGSMASGHLFK 196 >AF242557-1|AAK28343.1| 475|Homo sapiens thymic stromal co-transporter protein. Length = 475 Score = 30.7 bits (66), Expect = 6.3 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 4/112 (3%) Query: 124 PAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSLTATALIEALPAA 183 P + +G SD+Y RKI I +G +LS GLL + + A AL Sbjct: 89 PLLSAYGLGWLSDRYH-RKISICMSLLGFLLSRLGLLLKVLLDWPVEVLYGA--AALNGL 145 Query: 184 FTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSGILLR 235 F G + + G+ + + ++ R+ RL L+ + + L G+ SG L + Sbjct: 146 F-GGFSAFWSGVMALGSLGSSEGRRSVRLILIDLMLGLAGFCGSMASGHLFK 196 Database: human Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 73,234,838 Number of sequences in database: 224,733 Lambda K H 0.325 0.136 0.398 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 33,405,331 Number of Sequences: 224733 Number of extensions: 1154860 Number of successful extensions: 5277 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 5274 Number of HSP's gapped (non-prelim): 7 length of query: 293 length of database: 73,234,838 effective HSP length: 89 effective length of query: 204 effective length of database: 53,233,601 effective search space: 10859654604 effective search space used: 10859654604 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.6 bits) S2: 65 (30.3 bits)
- SilkBase 1999-2023 -