GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001908-TA|BGIBMGA001908-PA|IPR011701|Major facilitator
superfamily MFS_1
         (293 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical ...    56   3e-08
AL032640-5|CAA21644.1|  475|Caenorhabditis elegans Hypothetical ...    40   0.002
Z70753-12|CAA94761.2|  585|Caenorhabditis elegans Hypothetical p...    36   0.045
Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr...    30   2.2  
AF067943-4|AAC17661.1|  359|Caenorhabditis elegans Hypothetical ...    29   5.2  

>AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical
           protein Y4C6B.5 protein.
          Length = 469

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 50/198 (25%), Positives = 95/198 (47%), Gaps = 12/198 (6%)

Query: 40  IKYVLRETTVEPCLFMYMMCTSISSLAVQSMHLEKACRVNFNYGDDICDRLRLRNTTGLD 99
           I+Y LR   +E  LF+YM+ + ++    Q++  EK C + +   +  C     RN +   
Sbjct: 2   IRY-LRMLGMEIPLFLYMLGSYLNYPVFQNLIYEKECLIKYQQNETFC-----RNVSAYY 55

Query: 100 EEVNNVQSLVAKVVAWKFPLQTIIPAIM-VIFVGAWSDKYKKRKICIVFPFIGEILSNTG 158
           ++  ++Q+  A    +   L  + P+++  + +GA +D Y   KI ++ P+IG IL    
Sbjct: 56  DD-KDIQA-AANHFYFISSLTLLCPSLVTTLLLGAATD-YWSIKIPLIIPYIGCILGTIN 112

Query: 159 LLFATYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMADRTTVESRTFRLGLVTIC 218
            +F + YF   S+    + +AL     G ++ I     ++    + +  R++R+  V   
Sbjct: 113 YVFQS-YFIHTSVYFLLISDAL-FGLCGGFIAIISTTLTYGVKTSMLRYRSYRIAGVEGA 170

Query: 219 VTLGTPTGTALSGILLRA 236
           + LG   G ALSG +  A
Sbjct: 171 IGLGGTVGFALSGTIREA 188


>AL032640-5|CAA21644.1|  475|Caenorhabditis elegans Hypothetical
           protein Y43F8A.5 protein.
          Length = 475

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 41/182 (22%), Positives = 79/182 (43%), Gaps = 8/182 (4%)

Query: 53  LFMYMMCTSISSLAVQSMHLEKACRVNFNYGDDICDRLRLRNTTGLDEEVNNVQSLVAKV 112
           +F+Y + +S+     QS+   KAC +  +   +     + + T   D  V+++ S++   
Sbjct: 7   IFLYALTSSVFFPVFQSLIFYKAC-ITLSNSTEPEIACKSKETYARDNSVHSMSSVILMA 65

Query: 113 VAWKFPLQTIIPAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLFATYYFQELSLT 172
            +    +     +    +VG  SD  K RK+  + PFIG  +S+  +L    Y   LS  
Sbjct: 66  SSTGLCVSAFFTSR---WVGHLSD-VKSRKLAFLIPFIGLFISDFTILIQVLY-PRLSPY 120

Query: 173 ATALIEALPAAFTGSYVIIFMGMYSFMAD-RTTVESRTFRLGLVTICVTLGTPTGTALSG 231
              + E +   F G Y+ I  G +S ++   +    R   +  +   ++LG+  G  +S 
Sbjct: 121 YFIVSEVI-YGFFGGYMSITSGAFSIVSTMHSDQRERAKGIARLEGTISLGSTVGFLISS 179

Query: 232 IL 233
            L
Sbjct: 180 QL 181


>Z70753-12|CAA94761.2|  585|Caenorhabditis elegans Hypothetical
           protein F40F9.5 protein.
          Length = 585

 Score = 35.5 bits (78), Expect = 0.045
 Identities = 46/198 (23%), Positives = 81/198 (40%), Gaps = 18/198 (9%)

Query: 49  VEPCLFMYM----MCTSISSLAVQSMHLEKACRVNFNYGDDI---CDRLRLRNTTGLDEE 101
           VEP LF+ M    + T+ +SL        +  + +    D+    C  +   N T  D+ 
Sbjct: 62  VEPILFLVMCGFGLMTTNNSLFTYWARCVQIAQTHRELADNATYTCASIASSNGTLQDD- 120

Query: 102 VNNVQSLVAKVVAWKFPLQTIIPAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLF 161
              V+  +A    +   + TI   I+   +G WSD+   RK  ++F   G  ++N  LL 
Sbjct: 121 ---VEKDIANTKIYLQIMGTIPTLIVSPLIGNWSDR-NGRKSPLLFSLFGLFINNFILLC 176

Query: 162 ATYYFQELSLTATALIEALPAAFTGSYVIIFMGMYSFMAD----RTTVESRT--FRLGLV 215
           AT  ++ +++     I        G     F    + + D    +    S T  FR+GL 
Sbjct: 177 ATLTYETVNVYYWFFISEFMLGMFGGGAATFSTSLAIVTDDCRHKLKPGSSTVPFRVGLA 236

Query: 216 TICVTLGTPTGTALSGIL 233
           +   ++G   GT +  +L
Sbjct: 237 SFVQSIGMLNGTLIVSLL 254


>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
           protein B0198.3 protein.
          Length = 1050

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 122 IIPAIMVIFVGAWSDKYKKRKICIVFPFIGEILSNTGLLF 161
           ++P I +I++     K  K++ C+ F  I E +SNT  L+
Sbjct: 47  LLPHIRIIYMRTLKSKLFKKRTCVRFGEIKERISNTDTLY 86


>AF067943-4|AAC17661.1|  359|Caenorhabditis elegans Hypothetical
           protein F59B1.6 protein.
          Length = 359

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/35 (31%), Positives = 24/35 (68%)

Query: 187 SYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTL 221
           S +I+F+ +Y+ ++ +   ES+ +++ L+T C TL
Sbjct: 33  STIIVFILLYAIISRKRKKESQIYQIVLITHCFTL 67


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,722,898
Number of Sequences: 27539
Number of extensions: 202210
Number of successful extensions: 635
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 630
Number of HSP's gapped (non-prelim): 6
length of query: 293
length of database: 12,573,161
effective HSP length: 81
effective length of query: 212
effective length of database: 10,342,502
effective search space: 2192610424
effective search space used: 2192610424
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)