BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001908-TA|BGIBMGA001908-PA|IPR011701|Major facilitator superfamily MFS_1 (293 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g32880.1 68414.m04051 importin alpha-1 subunit, putative simi... 29 2.8 At2g18590.1 68415.m02165 transporter-related low similarity to s... 28 8.6 >At1g32880.1 68414.m04051 importin alpha-1 subunit, putative similar to importin alpha-1 subunit (Karyopherin alpha-1 subunit, KAP alpha) [Arabidopsis thaliana] SWISS-PROT:Q96321 Length = 183 Score = 29.5 bits (63), Expect = 2.8 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%) Query: 39 QIKYVLRETTVEPCLFMYMMCTSISSLAVQSMHLEKACRVNF---NYGDDICDRLRLRNT 95 QIKY++ ++ ++P L + C + ++ +E +V N GDD+ RL Sbjct: 83 QIKYMVEQSCIKP-LCDILFCPDVKTILKCLDGMENTLKVGEAEKNAGDDVSWYTRLIEA 141 Query: 96 TGLDEEVN 103 GLD+ +N Sbjct: 142 EGLDKILN 149 >At2g18590.1 68415.m02165 transporter-related low similarity to spinster membrane proteins from [Drosophila melanogaster] GI:12003976, GI:12003972, GI:12003974, GI:12003970; contains Pfam profile PF00083: major facilitator superfamily protein Length = 451 Score = 27.9 bits (59), Expect = 8.6 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 180 LPAAFTG-SYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSGIL 233 L AF G + I++ + S +AD SR F GL + T+G GT + ++ Sbjct: 84 LGVAFNGVGHAIVYPVLQSIIADSFKESSRGFGFGLWNLIGTVGGIGGTVVPTVM 138 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.325 0.136 0.398 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,385,754 Number of Sequences: 28952 Number of extensions: 188847 Number of successful extensions: 522 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 0 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 522 Number of HSP's gapped (non-prelim): 2 length of query: 293 length of database: 12,070,560 effective HSP length: 80 effective length of query: 213 effective length of database: 9,754,400 effective search space: 2077687200 effective search space used: 2077687200 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 40 (21.6 bits) S2: 59 (27.9 bits)
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