GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001908-TA|BGIBMGA001908-PA|IPR011701|Major facilitator
superfamily MFS_1
         (293 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32880.1 68414.m04051 importin alpha-1 subunit, putative simi...    29   2.8  
At2g18590.1 68415.m02165 transporter-related low similarity to s...    28   8.6  

>At1g32880.1 68414.m04051 importin alpha-1 subunit, putative similar
           to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 183

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)

Query: 39  QIKYVLRETTVEPCLFMYMMCTSISSLAVQSMHLEKACRVNF---NYGDDICDRLRLRNT 95
           QIKY++ ++ ++P L   + C  + ++      +E   +V     N GDD+    RL   
Sbjct: 83  QIKYMVEQSCIKP-LCDILFCPDVKTILKCLDGMENTLKVGEAEKNAGDDVSWYTRLIEA 141

Query: 96  TGLDEEVN 103
            GLD+ +N
Sbjct: 142 EGLDKILN 149


>At2g18590.1 68415.m02165 transporter-related low similarity to
           spinster membrane proteins from [Drosophila
           melanogaster] GI:12003976,  GI:12003972, GI:12003974,
           GI:12003970; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 451

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 180 LPAAFTG-SYVIIFMGMYSFMADRTTVESRTFRLGLVTICVTLGTPTGTALSGIL 233
           L  AF G  + I++  + S +AD     SR F  GL  +  T+G   GT +  ++
Sbjct: 84  LGVAFNGVGHAIVYPVLQSIIADSFKESSRGFGFGLWNLIGTVGGIGGTVVPTVM 138


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.136    0.398 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,385,754
Number of Sequences: 28952
Number of extensions: 188847
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 2
length of query: 293
length of database: 12,070,560
effective HSP length: 80
effective length of query: 213
effective length of database: 9,754,400
effective search space: 2077687200
effective search space used: 2077687200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 59 (27.9 bits)