GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001907-TA|BGIBMGA001907-PA|IPR011701|Major facilitator
superfamily MFS_1
         (332 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   5.4  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    22   7.2  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    22   7.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   9.5  

>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 114 KIVSDMTAWQYPVQNSIPTIIILFVGAWSDRTGN 147
           KI+    ++ +PV  +IP  I L + A   R G+
Sbjct: 400 KIMIQGFSYAFPVNLTIPVSISLLIAACGLRNGD 433


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 114 KIVSDMTAWQYPVQNSIPTIIILFVGAWSDRTGN 147
           KI+    ++ +PV  +IP  I L + A   R G+
Sbjct: 400 KIMIQGFSYAFPVNLTIPVSISLLIAACGLRNGD 433


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 114 KIVSDMTAWQYPVQNSIPTIIILFVGAWSDRTGN 147
           KI+    ++ +PV  +IP  I L + A   R G+
Sbjct: 400 KIMIQGFSYAFPVNLTIPVSISLLIAACGLRNGD 433


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 114 KIVSDMTAWQYPVQNSIPTIIILFVGAWSDRTGN 147
           KI+    ++ +PV  +IP  I L + A   R G+
Sbjct: 400 KIMIQGFSYAFPVNLTIPVSISLLIAACGLRNGD 433


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 38  ISSSLNAILNFFAYLTVEPFMICYILPSAISGLAVQRLNIEKACRSDLNYSDAICLLVRN 97
           +S   N ++    ++T    +   +L    +G   +   I K C   LN    + + +++
Sbjct: 276 VSFGTNLVILCALWITTL-LLFTILLAYGCAGATSEAEKIAKICFYWLNEIPTMPVSIKD 334

Query: 98  GDAEDNITIEAQITTSKIVSDMTAWQYPV 126
              ++ + + AQ +TS+      A  +PV
Sbjct: 335 QTIKEELALLAQQSTSRTSKFSAAGFFPV 363


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
          protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 7.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 10 EMTEVSKENSENNEQIENKETPNTR 34
          + + VS  +SEN+E   N  TP  +
Sbjct: 42 QYSPVSNSDSENSEVSSNSYTPKIK 66


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 5/15 (33%), Positives = 11/15 (73%)

Query: 134  IILFVGAWSDRTGNR 148
            +++ +G W+D  GN+
Sbjct: 2394 VLIALGGWNDSAGNK 2408


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.138    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,809
Number of Sequences: 317
Number of extensions: 2931
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 332
length of database: 114,650
effective HSP length: 57
effective length of query: 275
effective length of database: 96,581
effective search space: 26559775
effective search space used: 26559775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)