GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001907-TA|BGIBMGA001907-PA|IPR011701|Major facilitator
superfamily MFS_1
         (332 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)                 82   7e-16
SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)                 77   3e-14
SB_49164| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   8e-10
SB_57014| Best HMM Match : PMP22_Claudin (HMM E-Value=4.6)             56   3e-08
SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   5e-08
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              53   3e-07
SB_57480| Best HMM Match : MFS_1 (HMM E-Value=0.0025)                  45   1e-04
SB_13129| Best HMM Match : PUCC (HMM E-Value=0.013)                    33   0.25 
SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)                    28   9.3  
SB_13308| Best HMM Match : MFS_1 (HMM E-Value=0.0008)                  28   9.3  

>SB_43212| Best HMM Match : MFS_1 (HMM E-Value=0.00051)
          Length = 446

 Score = 81.8 bits (193), Expect = 7e-16
 Identities = 62/203 (30%), Positives = 105/203 (51%), Gaps = 16/203 (7%)

Query: 52  LTVEPFMICYILPSAISGLAVQRLNIEKACRSDLNYSDAICLLVRNGDAEDNITIEAQIT 111
           +TVEP +  Y+  + +S   +Q+L   K C+   +Y+ + C  + +   E N      + 
Sbjct: 10  ITVEPVLFLYMFCTFMSSPLLQQLAYRKICKE--HYNTSACNNLSDYQNEQNY-----VQ 62

Query: 112 TSKIVSDMTAWQYPVQNSIPTIII-LFVGAWSDRTGNRKALMLIPLIGEIISSFGLILTT 170
           TS   S+   +Q  +  ++P+I   L +GAWSDR G RKA+M++P +G I+ +   +L  
Sbjct: 63  TS--TSNWMRYQ-ALALALPSIASSLVLGAWSDRVG-RKAIMILPPVGNILMNINYMLNV 118

Query: 171 YFFLEWPLWATALIEALPSALS-GGSSIAFMGSYSYIADVTTLESRTFRIGFVAVIVSLV 229
           +FF    L    LI  +  A + GG +   +  +SY+AD+T    RT RI  +  +V L 
Sbjct: 119 HFF---SLNVNYLIIGIVIAGTFGGFATTLLSVFSYMADITDKSHRTLRISILESMVFLG 175

Query: 230 LPFGISISGVLTEAVGYYGVFGL 252
              G  ++GV+ +  G+   FGL
Sbjct: 176 GSVGELVAGVMLDHSGFMATFGL 198


>SB_16975| Best HMM Match : MFS_1 (HMM E-Value=2.6e-24)
          Length = 1193

 Score = 76.6 bits (180), Expect = 3e-14
 Identities = 76/315 (24%), Positives = 139/315 (44%), Gaps = 18/315 (5%)

Query: 20  ENNEQIENKE-TPNTRKWSISSSL-NAILNFFAYLTVEPFMICY-----ILPSAISGLAV 72
           ENN   ++K  +P +   S  +SL     + F+ +TVEP + CY     +    I     
Sbjct: 5   ENNRSKDSKSPSPESEDSSSDTSLYRRFESCFSGITVEPVIFCYAFGIILHVPVIQQYIH 64

Query: 73  QRLNIEKACRSDLNYSDA--ICLLVRNGDAEDNITIEAQITTSKIVSDMTAWQYPVQNSI 130
           QRL+  K    + N +D+   C  ++  ++ +  T+E Q       S M        ++ 
Sbjct: 65  QRLSEGKGLTYEYNNTDSRTTCEPIQMANSSEE-TLELQKEVQAEASYMQMGLVLSVSTP 123

Query: 131 PTIIILFVGAWSDRTGNRKALMLIPLIGEIISSFGLILTTYFFLEWPLWATALIEALPSA 190
             ++ L +GAWSDR G R+A M +P+ G  + S  +++  YF  E P+    L E + + 
Sbjct: 124 SLLVALLLGAWSDRAGRRRA-MAMPIFGSAVESAIILVIMYF--ELPVTFLLLAEFI-NG 179

Query: 191 LSGGSSIAFMGSYSYIADVTTLESRTFRIGFVAVIVSLVLPFGISISGVLTEAVGYYGVF 250
             G      +  +SYIAD+T    R FR+G +  I  +        SG     +G+   +
Sbjct: 180 SCGFFPTMVLSVFSYIADITEESQRAFRLGILEAIAFISGMLSHLTSGWWINNLGFRAPY 239

Query: 251 GLNMILYILGFIHTYFRVHNVRNQSVEGNLINKIIDFFHPRNAWDSISIMFLTPLKQRIQ 310
            L +IL     ++  F +   R + V      +++   H R    +I ++F      +  
Sbjct: 240 WLLLILNTFALLYVTFILPESRAKHVMEKSKVRVLSLDHIR----AIVMIFTKSRDPQRM 295

Query: 311 TILVLWAHIVILGPV 325
           TI ++ + ++I+  +
Sbjct: 296 TIFMVISGLMIVSSI 310


>SB_49164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 457

 Score = 61.7 bits (143), Expect = 8e-10
 Identities = 39/148 (26%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 132 TIIILFVGAWSDRTGNRKALMLIPLIGEIISSFGLILTTYFFLEWPLWATALIEALPSAL 191
           + I+ F G+++DR G RK  ++ PL+G I+ +  L+L  Y  LE P++   ++  L + L
Sbjct: 110 SFIVPFTGSYTDRRG-RKPGLIAPLVGAILETLVLVLVLY--LELPVYVL-IVGGLVNGL 165

Query: 192 SGGSSIAFMGSYSYIADVTTLESRTFRIGFVAVIVSLVLPFGISISGVLTEAVGYYGVFG 251
           +G  +   M +  Y+ D T  + + FR+  +  ++          SG+  E +G+     
Sbjct: 166 TGNEATMMMATTCYVTDTTDDKQKAFRLSILQGVLFFSATVSQLTSGLWIEYLGFRITAW 225

Query: 252 LNMILYILGFIHTYFRVHNVRNQSVEGN 279
             + L I+  I+  F V   R  S E +
Sbjct: 226 FEISLLIVPLIYVIFFVEESRTSSREND 253


>SB_57014| Best HMM Match : PMP22_Claudin (HMM E-Value=4.6)
          Length = 177

 Score = 56.4 bits (130), Expect = 3e-08
 Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 15/180 (8%)

Query: 46  LNFFAYLTVEPFMICYILPSAISGLAVQRLNIEKACRSDLNYSDAICLLVRNGDAEDNIT 105
           L +   LT+EP +  Y+    + G  +Q+    K  +    + D         +   N T
Sbjct: 6   LTWRTLLTIEPVIFLYVYGILMHGPVIQQFVYSKIAKQKGFFYDPSSHTGCGNETRYNST 65

Query: 106 I-----EAQITTSKIVSDMTAWQYPVQNSIPTIII-LFVGAWSDRTGNRKALMLIPLIGE 159
           +     E Q T + +   +T ++     S+P+I++ L VG+WSD  G RK  +L+P+IG 
Sbjct: 66  LHNLEQEVQATAAYVQIGITMFE-----SLPSIVLSLMVGSWSDCHG-RKPAILLPVIGS 119

Query: 160 IISSFGLILTTYFFLEWPLWATALIEALPSALSGGSSIAFMGSYSYIADVTTLESRTFRI 219
           ++ +  +++  Y  L+        I AL +  SG      MG  +YIAD T    R  R+
Sbjct: 120 MLEAVCVLIVMYCDLD---VYVLFIGALLNGCSGYLPTLLMGIMAYIADSTDESQRALRL 176


>SB_43380| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 55.6 bits (128), Expect = 5e-08
 Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 6/156 (3%)

Query: 124 YPVQNSIPTIIIL-FVGAWSDRTGNRKALMLIPLIGEIISSFGLILTTYFFLEWPLWATA 182
           Y +   +P ++    +G WSD+ G RK LMLI   G I+ +   + T Y   + PL+   
Sbjct: 88  YNLALQLPAVLTACLLGTWSDKNG-RKPLMLIVAFGAIVDASVALFTVY--TDGPLYPLI 144

Query: 183 LIEALPSALSGGSSIAFMGSYSYIADVTTLESRTFRIGFVAVIVSLVLPFGISISGVLTE 242
           +   + + + G      +   +YIAD T  E R  ++  +  +  L    G   SG+   
Sbjct: 145 IGGGI-NGVMGFYPTMVLALLAYIADTTPPERRAIKLAVLEALAFLSGTLGHFSSGIYIH 203

Query: 243 AVGYYGVFGLNMILYILGFIH-TYFRVHNVRNQSVE 277
            +GY   F   + L+++ FI+  +F   ++  Q +E
Sbjct: 204 HLGYKATFWGILSLHLINFIYLLFFLPESMPKQRIE 239


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 53.2 bits (122), Expect = 3e-07
 Identities = 35/114 (30%), Positives = 60/114 (52%), Gaps = 9/114 (7%)

Query: 129 SIPTIII-LFVGAWSDRTGNRKALMLIPLIGEIISSFGLILTTYFFLEWPLWATALIEAL 187
           SIP++I+ L +G W+D  G ++A++  P IG ++ S   +L  Y  L+WP+    +  A 
Sbjct: 90  SIPSVIVSLMLGPWTDTAGRKRAIVA-PAIGSLLESINTLLVMY--LKWPILVLFVGSAF 146

Query: 188 PSALSGGSSIAFMGSYSYIADVTTLESRTFRIGFVAVIVSLVLPFGISISGVLT 241
            +  SG  ++    S +YIAD T  +    R+     I+ L+L  G  +S + T
Sbjct: 147 -TGFSGFFTVMTQASMAYIADTTPEQQVALRL----AIMQLMLLIGGLVSQLTT 195


>SB_57480| Best HMM Match : MFS_1 (HMM E-Value=0.0025)
          Length = 930

 Score = 44.8 bits (101), Expect = 1e-04
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 12/141 (8%)

Query: 132 TIIILFVGAWSDRTGNRKALMLIPLIGEIISSFGLILTTYFFLEWPLWATALIEALPSAL 191
           + I+ F G+++DR G RK  ++ PL+G I+ +  L L  YF  E P++   +   L + L
Sbjct: 92  SFIVPFTGSYTDRRG-RKPGLIAPLVGAILETLVLFLVLYF--ELPVY-VLIAGGLVNGL 147

Query: 192 SGGSSIAFMGSYSYIADVTTLESRTFRIGFVAVIVSLVLPFGISISGVLTEAVGYYGVFG 251
           +G  +   M +  Y+ D T  E+    + F++  +S +       SG+  + +G+     
Sbjct: 148 TGNEATMTMATTCYVTDTT--EAILQGVFFISATLSQL------TSGLWIDYLGFKITTW 199

Query: 252 LNMILYILGFIHTYFRVHNVR 272
             + L I+  I+  F V   R
Sbjct: 200 FLLSLLIIPLIYVIFFVEESR 220


>SB_13129| Best HMM Match : PUCC (HMM E-Value=0.013)
          Length = 347

 Score = 33.5 bits (73), Expect = 0.25
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 191 LSGGSSIAFMGSYSYIADVTTLESRTFRIGFVAVIVSLVLPFGISISGV-LTEAVGY 246
           L G  S      ++Y++D+T ++ R  RIG +  ++ +       ISG+ + E+ GY
Sbjct: 16  LCGSFSCVMFSGFAYLSDITDIKKRGVRIGILESVIYVGATASFFISGIWVRESGGY 72


>SB_50642| Best HMM Match : Spectrin (HMM E-Value=1)
          Length = 739

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 11/39 (28%), Positives = 24/39 (61%)

Query: 3   EKPGSVTEMTEVSKENSENNEQIENKETPNTRKWSISSS 41
           E+  S +++T  +   SE++  +   +TP+TR  S+++S
Sbjct: 392 EQGTSSSQLTSTASSLSEDSSSLSRSDTPSTRPGSVANS 430


>SB_13308| Best HMM Match : MFS_1 (HMM E-Value=0.0008)
          Length = 700

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)

Query: 189 SALSGG-SSIAFMGSYSYIADVTTLESRTFRIGFVAVIVSLVLPFGISISGVLTEAVGYY 247
           S  +GG S++ +   + Y+ D++  E     I  V V+  +V      +SG     +G  
Sbjct: 495 SFFAGGLSAVHYTFIFWYLTDLSP-EDSAMVIAVVIVLRDIVSSISYKLSGRTLGILGPV 553

Query: 248 GVFGLNMILYILGFI 262
               L ++LYI+ F+
Sbjct: 554 NTLHLALLLYIISFL 568


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.138    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,078,612
Number of Sequences: 59808
Number of extensions: 366550
Number of successful extensions: 1071
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 11
length of query: 332
length of database: 16,821,457
effective HSP length: 82
effective length of query: 250
effective length of database: 11,917,201
effective search space: 2979300250
effective search space used: 2979300250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)