GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001907-TA|BGIBMGA001907-PA|IPR011701|Major facilitator
superfamily MFS_1
         (332 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27660.1 68416.m03454 glycine-rich protein / oleosin identica...    33   0.27 
At1g50030.1 68414.m05614 target of rapamycin protein (TOR) ident...    31   1.4  
At5g57655.2 68418.m07204 xylose isomerase family protein contain...    29   4.4  
At5g57655.1 68418.m07203 xylose isomerase family protein contain...    29   4.4  
At5g25040.1 68418.m02967 integral membrane transporter family pr...    29   4.4  
At4g00370.1 68417.m00051 sugar transporter family protein contai...    28   7.6  
At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative (CH...    28   7.6  
At1g79710.1 68414.m09296 integral membrane transporter family pr...    28   7.6  

>At3g27660.1 68416.m03454 glycine-rich protein / oleosin identical
           to oleosin isoform GB:S71286 from [Arabidopsis
           thaliana]; identical to cDNA oleosin (isoform Atol2)
           GI:987013
          Length = 191

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 5/81 (6%)

Query: 182 ALIEALPSALSGGSSIAFMGSYSYIADVTTLESRTFRIGFVAVIVSLVLPFGISISGVLT 241
           ALI  +P    GG+ +   G     + +  L S    + F  VIV   L  G++++G+L 
Sbjct: 54  ALIAGVPI---GGTLLTLAGLTLAGSVIGLLVSIPLFLLFSPVIVPAALTIGLAVTGIL- 109

Query: 242 EAVGYYGVFGLNMILYILGFI 262
            A G +G+ GL+ + ++L ++
Sbjct: 110 -ASGLFGLTGLSSVSWVLNYL 129


>At1g50030.1 68414.m05614 target of rapamycin protein (TOR)
           identical to pTOR [Arabidopsis thaliana] GI:12002902;
           contains Pfam profiles PF00454 Phosphatidylinositol 3-
           and 4-kinase, PF02259 FAT domain, PF02260 FATC domain
          Length = 2481

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 25/95 (26%), Positives = 43/95 (45%), Gaps = 9/95 (9%)

Query: 99  DAEDNITIEAQITTSKI--VSDMTAWQYPVQNSIPTIIILFVGAWSDRTGNRKALMLIPL 156
           +A +NI     +T   +  V  +   QY     IP ++ L V A  D     K  + +  
Sbjct: 711 NANNNIVTGVLVTVGDLARVGGLAMRQY-----IPELMPLIVEALMDGAAVAKREVAVST 765

Query: 157 IGEIISSFGLILTTYFFLEWPLWATALIEALPSAL 191
           +G+++ S G ++T Y   E+PL    L++ L   L
Sbjct: 766 LGQVVQSTGYVVTPY--KEYPLLLGLLLKLLKGDL 798


>At5g57655.2 68418.m07204 xylose isomerase family protein contains
           similarity to Xylose isomerase (EC 5.3.1.5)
           (Swiss-Prot:P22842) [Thermoanaerobacter ethanolicus]
          Length = 477

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 177 PLWATALIEALPSALSGGSSIAFMGSYSYIA 207
           PLW TA +   P  + GG++ + +G Y+Y A
Sbjct: 178 PLWGTAQLFLHPRYMHGGATSSEVGVYAYAA 208


>At5g57655.1 68418.m07203 xylose isomerase family protein contains
           similarity to Xylose isomerase (EC 5.3.1.5)
           (Swiss-Prot:P22842) [Thermoanaerobacter ethanolicus]
          Length = 287

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 177 PLWATALIEALPSALSGGSSIAFMGSYSYIA 207
           PLW TA +   P  + GG++ + +G Y+Y A
Sbjct: 178 PLWGTAQLFLHPRYMHGGATSSEVGVYAYAA 208


>At5g25040.1 68418.m02967 integral membrane transporter family
           protein similar to biopterin transporter (GI:3377706)
           [Leishmania mexicana]; contains Pfam PF03092: BT1
           family; contains TIGRFAMS TIGR00788: folate/biopterin
           transporter; Interpro IPR001991/ PR00173
           Sodium:dicarboxylater symporter family
          Length = 492

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 233 GISISGVLTEAVGYYGVFGLNMILY----ILGFIHTYFRVHNVRNQSVEGNLINKIIDFF 288
           G  +SG+L   VG  GVFGL    +    ++G + +  RVH    +    N +  +    
Sbjct: 195 GFFMSGILVHLVGSKGVFGLLTFTFALVSVVGVLFSEPRVHGFSFKQNFTNAMKAMWRTI 254

Query: 289 HPRNAWDSISIMFLT 303
              + W     MF+T
Sbjct: 255 KCSDVWQPSLYMFIT 269


>At4g00370.1 68417.m00051 sugar transporter family protein contains
           Pfam profile PF00083: major facilitator superfamily
           protein
          Length = 541

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 29/124 (23%), Positives = 52/124 (41%), Gaps = 3/124 (2%)

Query: 138 VGAWSDRTGNRKALMLIPLIGEIISSFGLILTTYFFLEWPLWATALIEALPSALSGGS-S 196
           +G W   T   + L  I  + +I+ S G +   +F  +     T  +  L  A S GS +
Sbjct: 405 IGGWIADTLVSRGLS-ITNVRKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDA 463

Query: 197 IAFMGSYSYIADVTTLESRTFRIGFVAVIVSLVLPFGISISGVLTEAVGYYGVFGLNMIL 256
            +  G YS   D+    +    +G       L   FG + +G + +   +  VF + + L
Sbjct: 464 FSQSGLYSNHQDIGPRYAGVL-LGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVAL 522

Query: 257 YILG 260
           Y++G
Sbjct: 523 YLIG 526


>At2g13620.1 68415.m01501 cation/hydrogen exchanger, putative
           (CHX15) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 821

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/26 (46%), Positives = 19/26 (73%), Gaps = 1/26 (3%)

Query: 226 VSLVLPFGISISGVLTEAVGYYGVFG 251
           + L+L  G+ ISG +T+A+G + VFG
Sbjct: 270 ICLILT-GVMISGFITDAIGTHSVFG 294


>At1g79710.1 68414.m09296 integral membrane transporter family
           protein similar to high affinity folic acid/methotrexate
           transporter 5 (GI:21898554) [Leishmania tarentolae];
           Interpro IPR001991/ PR00173 Sodium:dicarboxylater
           symporter family
          Length = 497

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/33 (51%), Positives = 20/33 (60%), Gaps = 3/33 (9%)

Query: 220 GFVAVIVSLVLPFGISISGVLTEAVGYYGVFGL 252
           G  + I SLV   G S+SGVL   VG  GV+GL
Sbjct: 188 GLCSSIGSLV---GFSLSGVLVHLVGSKGVYGL 217


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.138    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,444,103
Number of Sequences: 28952
Number of extensions: 291193
Number of successful extensions: 822
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 819
Number of HSP's gapped (non-prelim): 9
length of query: 332
length of database: 12,070,560
effective HSP length: 81
effective length of query: 251
effective length of database: 9,725,448
effective search space: 2441087448
effective search space used: 2441087448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)