GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001906-TA|BGIBMGA001906-PA|IPR010294|ADAM-TS Spacer 1,
IPR010909|PLAC, IPR000884|Thrombospondin, type I
         (535 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    35   0.033
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    34   0.057
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          30   0.93 
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    29   1.6  
SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr 3|||...    28   3.7  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   5.0  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   6.5  

>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 34.7 bits (76), Expect = 0.033
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 11/83 (13%)

Query: 143 YFTDSPIDEGDEARPEIPDVVPAIITKHTRRHHSFDAYPR-------ATGNIPRHLD--- 192
           ++ DS +D      PE PDV+  +    T    S  + P+        T N P H D   
Sbjct: 458 HYIDSSMDSNRSIEPE-PDVISTVRNSSTIPQASSSSVPKIVVDSSPVTENPPSHSDVMG 516

Query: 193 HPSTSNEQTSVETGIDANVIGNR 215
              T +   S +T + ANV+GNR
Sbjct: 517 QKDTISSYYSTDTDVSANVMGNR 539


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 33.9 bits (74), Expect = 0.057
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 5/62 (8%)

Query: 262 PPIGRRRRCGNVPCPPRWRAASWSPCPRCGPATRTRIVGCVQDHSKGITKISDHKCPPPK 321
           PP  R    G++P PP+ R+A   P PR  P+T     G           +S+   PPP 
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST-----GRQPPPLSSSRAVSNPPAPPPA 394

Query: 322 PP 323
            P
Sbjct: 395 IP 396


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 29.9 bits (64), Expect = 0.93
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 3/74 (4%)

Query: 275 CPPRWRAASWSPCPRCGPATRTRIVGCVQDHSKGITKISDHKCPPPKPPTTEMCNIPNCD 334
           C    + AS   CPRC   +R   + C  +H K +TK S  + P    P +++ N  N D
Sbjct: 9   CSTCQKNASKYRCPRCD--SRFCCLECNLEH-KRLTKCSGERDPATFVPKSKLVNHLNSD 65

Query: 335 DLSLGPVRRIESKR 348
              L  V R+ +++
Sbjct: 66  FNFLSGVERLINRK 79


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 19  ESVLAGSNSRELRCGRRLVSGLFSKPRLPLGYTFVATVP-----RGACRINVTELASSEN 73
           +S + G    +   G+ LV   +   R+ +   F+ T+P      G   I  T    +EN
Sbjct: 146 DSSIGGKTGIDTPLGKNLVGAFWQPLRVYVDMVFLHTLPPRQVINGLSEIIKTAAMWNEN 205

Query: 74  YIALRLSNSSYILNGEFAVSAPGMYE 99
              L  +NS+ +L+     S PG Y+
Sbjct: 206 DFQLLENNSAVLLDALNKPSVPGEYK 231


>SPCC895.04c |ufe1||SNARE Ufe1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 122 IYHPIDIMILYTQPKPNIKYEYFTDSPIDEGDEARPEIPD 161
           +YH  D+ +   Q K NI  ++ T +P DE      EIP+
Sbjct: 168 LYHLQDLRLKRGQEKRNIASDFLTKNPTDENSAV--EIPE 205


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 150 DEGDEARPEIPDVVPAIITKHTRRHHSFDAYPRATGNIPRHLDHPSTSNEQTSVETGIDA 209
           + GD +R E     P  + K    +  FD+   +  ++P   D+P  +N+ T+   G+D 
Sbjct: 53  EAGDRSRHERFSKEPLEVKKLPVENEYFDSKFASASSMPSSKDNPQ-NNDFTNSLQGLDF 111

Query: 210 NVIGNR 215
              G+R
Sbjct: 112 GTFGSR 117


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 166 IITKHTRRHHSFDAY----PRATGNIPRHLDHPSTSNEQTSVETGIDANVIGNR 215
           I  K   + +S+D Y    P A   IP       T+  + +VE+G+ +   GNR
Sbjct: 29  IENKDVLKSNSWDPYAANAPIALSEIPSSSKSGKTNGSKAAVESGLASGAFGNR 82


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,490
Number of Sequences: 5004
Number of extensions: 110457
Number of successful extensions: 211
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 8
length of query: 535
length of database: 2,362,478
effective HSP length: 76
effective length of query: 459
effective length of database: 1,982,174
effective search space: 909817866
effective search space used: 909817866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)