BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001906-TA|BGIBMGA001906-PA|IPR010294|ADAM-TS Spacer 1, IPR010909|PLAC, IPR000884|Thrombospondin, type I (535 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 35 0.19 02_04_0335 + 22117902-22119869 33 0.43 09_02_0167 + 5221910-5222516,5222826-5224642 32 1.00 02_02_0557 + 11470259-11472307 32 1.00 07_01_0696 - 5261008-5263128 31 1.7 06_01_1013 - 7931756-7935109 29 7.0 04_04_0891 + 29130494-29130904,29131043-29131102,29131203-291314... 29 7.0 03_02_1030 - 13536511-13537929 29 7.0 11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22... 29 9.3 07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136... 29 9.3 >01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476, 3085904-3085985,3086085-3086275,3086410-3086616, 3086709-3086871,3087905-3087960,3088035-3088148, 3088599-3089807 Length = 827 Score = 34.7 bits (76), Expect = 0.19 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 12/77 (15%) Query: 226 QCTRSCGGGIQLGKYRCVESTSSGDREVSSVHCTGSPPIGRRR-RCGNVPCPPRWRAASW 284 QC R CGG +Q GK+ C +G C G P GRR CG P A Sbjct: 304 QCKRECGGMLQCGKHSCERGCHAG-------KCGGCPLQGRRTCPCGKKDYPSLDCDAEA 356 Query: 285 SPCPRCGPATRTRIVGC 301 + C +T +++GC Sbjct: 357 ATC----GSTCEKVLGC 369 >02_04_0335 + 22117902-22119869 Length = 655 Score = 33.5 bits (73), Expect = 0.43 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 238 GKYRCVESTSSGDREVSSVHCTGSPPIGRRRRCGNVPCPPRWRAASWSPCPRCGPATRTR 297 G RC++ + E + HC G RRCG+ CP R S C + G R Sbjct: 310 GGRRCMQLGCTKSAEGKTDHCIAH---GGGRRCGHQGCPKAARGKS-GRCIKHGGGKRCS 365 Query: 298 IVGCVQ 303 + GC++ Sbjct: 366 VEGCIR 371 >09_02_0167 + 5221910-5222516,5222826-5224642 Length = 807 Score = 32.3 bits (70), Expect = 1.00 Identities = 14/33 (42%), Positives = 20/33 (60%) Query: 36 LVSGLFSKPRLPLGYTFVATVPRGACRINVTEL 68 +VS LF+ L L YT V +PR CR+N ++ Sbjct: 494 VVSNLFNLRYLDLAYTRVKVIPRSLCRLNKLQM 526 >02_02_0557 + 11470259-11472307 Length = 682 Score = 32.3 bits (70), Expect = 1.00 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%) Query: 91 AVSAPGMYEAAGARFLYTRTAGLDNVHANGPIYHPIDIMILYTQPKPNIKYEYFTDSPID 150 AV+A G + G +F Y+ AG+ ++ +G D ++ T KP +K F +P+ Sbjct: 22 AVAAAGDGNS-GNQFAYSGFAGVKDLTLDGTAMVTPDGLLELTNGKPQVKGHAFHPTPLR 80 Query: 151 EGDEARPE 158 G+ + PE Sbjct: 81 FGESSSPE 88 >07_01_0696 - 5261008-5263128 Length = 706 Score = 31.5 bits (68), Expect = 1.7 Identities = 14/46 (30%), Positives = 21/46 (45%) Query: 302 VQDHSKGITKISDHKCPPPKPPTTEMCNIPNCDDLSLGPVRRIESK 347 V H ++ I+DH C PP + + ++PN D S E K Sbjct: 569 VNHHDDSVSDIADHGCSGSVPPPSAVVDLPNDSDQSCSGYYEAELK 614 >06_01_1013 - 7931756-7935109 Length = 1117 Score = 29.5 bits (63), Expect = 7.0 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 226 QCTRSCGGGIQLGKYRCVESTSSGDREVSSVHCTGSPPIGRRRRCGNVPCPPRWRAASWS 285 +C + CG Q G + C S + + S G R CG V PR Sbjct: 639 RCNQPCGKNRQCGMHACNRSCHPSPCDPPPANGDASSSTGGRASCGQVCGAPRRECKHTC 698 Query: 286 PCPRCGPAT 294 P C P++ Sbjct: 699 TAP-CHPSS 706 >04_04_0891 + 29130494-29130904,29131043-29131102,29131203-29131409, 29131520-29131645,29131767-29131823,29131946-29132014 Length = 309 Score = 29.5 bits (63), Expect = 7.0 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 7/105 (6%) Query: 276 PPRWRAASWSPCPRCGPATRTRIVGCVQDHSKGITKISDHKCPPPKPPTTEMCNIPNC-D 334 PP RA +SP R R+R +G V T+ + P P PP T +P+ + Sbjct: 31 PPSGRALPFSPLTR---TPRSRGLGTVTCFVPQGTE--SQQAPAPSPPPTVPVPVPSLEE 85 Query: 335 DLSLGPVRRIESKRTRNKELTDTFREGPVYTVSINTTESEIGPEY 379 + + RRI ++ R T+ V + S+ T + Y Sbjct: 86 EAAAAAARRIAERKARKLSERRTYLVAAVMS-SLGFTSMAVAAVY 129 >03_02_1030 - 13536511-13537929 Length = 472 Score = 29.5 bits (63), Expect = 7.0 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Query: 318 PPPK--PPTTEMCNIPNCDDLSLGPVRRIESKRTRNKELTDTFREG 361 PPP PP + IPN D S P+ +E+ LT FR+G Sbjct: 90 PPPASFPPGAAVPPIPNLPDASPAPLTYVEAAGDGLIALTSCFRDG 135 >11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-229595, 229665-229728,230209-230596 Length = 525 Score = 29.1 bits (62), Expect = 9.3 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 303 QDHSKGITKISDHKCPPPKPPTTEMCNIPNCDDLSLGPVRRIESKRTRNKELTDTFREGP 362 Q S T + PPP PP+T + L+ P+ R+ S + ++ L R P Sbjct: 5 QQQSPPSTTATTTTSPPPPPPSTPPPASSSSSSLAKLPL-RLHSLASSSRSLLSALRRSP 63 Query: 363 VYTV 366 V T+ Sbjct: 64 VTTL 67 >07_03_0336 + 16911947-16912144,16912636-16912692,16912917-16913696, 16914666-16914713,16914795-16916032,16916776-16916860, 16917323-16917379 Length = 820 Score = 29.1 bits (62), Expect = 9.3 Identities = 17/48 (35%), Positives = 23/48 (47%) Query: 202 SVETGIDANVIGNRKFMWRILSFTQCTRSCGGGIQLGKYRCVESTSSG 249 SV +G D N I + + R+ + Q S G +Q GKYR S G Sbjct: 735 SVTSGDDLNDIDRKPNIGRVAASIQRLESSIGKVQSGKYRGCSGVSMG 782 Database: rice Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.320 0.135 0.428 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,827,865 Number of Sequences: 37544 Number of extensions: 838237 Number of successful extensions: 2033 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 2023 Number of HSP's gapped (non-prelim): 14 length of query: 535 length of database: 14,793,348 effective HSP length: 85 effective length of query: 450 effective length of database: 11,602,108 effective search space: 5220948600 effective search space used: 5220948600 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 62 (29.1 bits)
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