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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001906-TA|BGIBMGA001906-PA|IPR010294|ADAM-TS Spacer 1,
IPR010909|PLAC, IPR000884|Thrombospondin, type I
         (535 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    35   0.19 
02_04_0335 + 22117902-22119869                                         33   0.43 
09_02_0167 + 5221910-5222516,5222826-5224642                           32   1.00 
02_02_0557 + 11470259-11472307                                         32   1.00 
07_01_0696 - 5261008-5263128                                           31   1.7  
06_01_1013 - 7931756-7935109                                           29   7.0  
04_04_0891 + 29130494-29130904,29131043-29131102,29131203-291314...    29   7.0  
03_02_1030 - 13536511-13537929                                         29   7.0  
11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22...    29   9.3  
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136...    29   9.3  

>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 34.7 bits (76), Expect = 0.19
 Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 12/77 (15%)

Query: 226 QCTRSCGGGIQLGKYRCVESTSSGDREVSSVHCTGSPPIGRRR-RCGNVPCPPRWRAASW 284
           QC R CGG +Q GK+ C     +G        C G P  GRR   CG    P     A  
Sbjct: 304 QCKRECGGMLQCGKHSCERGCHAG-------KCGGCPLQGRRTCPCGKKDYPSLDCDAEA 356

Query: 285 SPCPRCGPATRTRIVGC 301
           + C     +T  +++GC
Sbjct: 357 ATC----GSTCEKVLGC 369


>02_04_0335 + 22117902-22119869
          Length = 655

 Score = 33.5 bits (73), Expect = 0.43
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 238 GKYRCVESTSSGDREVSSVHCTGSPPIGRRRRCGNVPCPPRWRAASWSPCPRCGPATRTR 297
           G  RC++   +   E  + HC      G  RRCG+  CP   R  S   C + G   R  
Sbjct: 310 GGRRCMQLGCTKSAEGKTDHCIAH---GGGRRCGHQGCPKAARGKS-GRCIKHGGGKRCS 365

Query: 298 IVGCVQ 303
           + GC++
Sbjct: 366 VEGCIR 371


>09_02_0167 + 5221910-5222516,5222826-5224642
          Length = 807

 Score = 32.3 bits (70), Expect = 1.00
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 36  LVSGLFSKPRLPLGYTFVATVPRGACRINVTEL 68
           +VS LF+   L L YT V  +PR  CR+N  ++
Sbjct: 494 VVSNLFNLRYLDLAYTRVKVIPRSLCRLNKLQM 526


>02_02_0557 + 11470259-11472307
          Length = 682

 Score = 32.3 bits (70), Expect = 1.00
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 91  AVSAPGMYEAAGARFLYTRTAGLDNVHANGPIYHPIDIMILYTQPKPNIKYEYFTDSPID 150
           AV+A G   + G +F Y+  AG+ ++  +G      D ++  T  KP +K   F  +P+ 
Sbjct: 22  AVAAAGDGNS-GNQFAYSGFAGVKDLTLDGTAMVTPDGLLELTNGKPQVKGHAFHPTPLR 80

Query: 151 EGDEARPE 158
            G+ + PE
Sbjct: 81  FGESSSPE 88


>07_01_0696 - 5261008-5263128
          Length = 706

 Score = 31.5 bits (68), Expect = 1.7
 Identities = 14/46 (30%), Positives = 21/46 (45%)

Query: 302 VQDHSKGITKISDHKCPPPKPPTTEMCNIPNCDDLSLGPVRRIESK 347
           V  H   ++ I+DH C    PP + + ++PN  D S       E K
Sbjct: 569 VNHHDDSVSDIADHGCSGSVPPPSAVVDLPNDSDQSCSGYYEAELK 614


>06_01_1013 - 7931756-7935109
          Length = 1117

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 226 QCTRSCGGGIQLGKYRCVESTSSGDREVSSVHCTGSPPIGRRRRCGNVPCPPRWRAASWS 285
           +C + CG   Q G + C  S      +    +   S   G R  CG V   PR       
Sbjct: 639 RCNQPCGKNRQCGMHACNRSCHPSPCDPPPANGDASSSTGGRASCGQVCGAPRRECKHTC 698

Query: 286 PCPRCGPAT 294
             P C P++
Sbjct: 699 TAP-CHPSS 706


>04_04_0891 +
           29130494-29130904,29131043-29131102,29131203-29131409,
           29131520-29131645,29131767-29131823,29131946-29132014
          Length = 309

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 7/105 (6%)

Query: 276 PPRWRAASWSPCPRCGPATRTRIVGCVQDHSKGITKISDHKCPPPKPPTTEMCNIPNC-D 334
           PP  RA  +SP  R     R+R +G V       T+    + P P PP T    +P+  +
Sbjct: 31  PPSGRALPFSPLTR---TPRSRGLGTVTCFVPQGTE--SQQAPAPSPPPTVPVPVPSLEE 85

Query: 335 DLSLGPVRRIESKRTRNKELTDTFREGPVYTVSINTTESEIGPEY 379
           + +    RRI  ++ R      T+    V + S+  T   +   Y
Sbjct: 86  EAAAAAARRIAERKARKLSERRTYLVAAVMS-SLGFTSMAVAAVY 129


>03_02_1030 - 13536511-13537929
          Length = 472

 Score = 29.5 bits (63), Expect = 7.0
 Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 318 PPPK--PPTTEMCNIPNCDDLSLGPVRRIESKRTRNKELTDTFREG 361
           PPP   PP   +  IPN  D S  P+  +E+       LT  FR+G
Sbjct: 90  PPPASFPPGAAVPPIPNLPDASPAPLTYVEAAGDGLIALTSCFRDG 135


>11_01_0029 +
           226459-226973,227053-227424,227533-227688,229513-229595,
           229665-229728,230209-230596
          Length = 525

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 303 QDHSKGITKISDHKCPPPKPPTTEMCNIPNCDDLSLGPVRRIESKRTRNKELTDTFREGP 362
           Q  S   T  +    PPP PP+T      +   L+  P+ R+ S  + ++ L    R  P
Sbjct: 5   QQQSPPSTTATTTTSPPPPPPSTPPPASSSSSSLAKLPL-RLHSLASSSRSLLSALRRSP 63

Query: 363 VYTV 366
           V T+
Sbjct: 64  VTTL 67


>07_03_0336 +
           16911947-16912144,16912636-16912692,16912917-16913696,
           16914666-16914713,16914795-16916032,16916776-16916860,
           16917323-16917379
          Length = 820

 Score = 29.1 bits (62), Expect = 9.3
 Identities = 17/48 (35%), Positives = 23/48 (47%)

Query: 202 SVETGIDANVIGNRKFMWRILSFTQCTRSCGGGIQLGKYRCVESTSSG 249
           SV +G D N I  +  + R+ +  Q   S  G +Q GKYR     S G
Sbjct: 735 SVTSGDDLNDIDRKPNIGRVAASIQRLESSIGKVQSGKYRGCSGVSMG 782


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,827,865
Number of Sequences: 37544
Number of extensions: 838237
Number of successful extensions: 2033
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2023
Number of HSP's gapped (non-prelim): 14
length of query: 535
length of database: 14,793,348
effective HSP length: 85
effective length of query: 450
effective length of database: 11,602,108
effective search space: 5220948600
effective search space used: 5220948600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)

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