Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001906-TA|BGIBMGA001906-PA|IPR010294|ADAM-TS Spacer 1,
IPR010909|PLAC, IPR000884|Thrombospondin, type I
(535 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 35 0.19
02_04_0335 + 22117902-22119869 33 0.43
09_02_0167 + 5221910-5222516,5222826-5224642 32 1.00
02_02_0557 + 11470259-11472307 32 1.00
07_01_0696 - 5261008-5263128 31 1.7
06_01_1013 - 7931756-7935109 29 7.0
04_04_0891 + 29130494-29130904,29131043-29131102,29131203-291314... 29 7.0
03_02_1030 - 13536511-13537929 29 7.0
11_01_0029 + 226459-226973,227053-227424,227533-227688,229513-22... 29 9.3
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136... 29 9.3
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 34.7 bits (76), Expect = 0.19
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 12/77 (15%)
Query: 226 QCTRSCGGGIQLGKYRCVESTSSGDREVSSVHCTGSPPIGRRR-RCGNVPCPPRWRAASW 284
QC R CGG +Q GK+ C +G C G P GRR CG P A
Sbjct: 304 QCKRECGGMLQCGKHSCERGCHAG-------KCGGCPLQGRRTCPCGKKDYPSLDCDAEA 356
Query: 285 SPCPRCGPATRTRIVGC 301
+ C +T +++GC
Sbjct: 357 ATC----GSTCEKVLGC 369
>02_04_0335 + 22117902-22119869
Length = 655
Score = 33.5 bits (73), Expect = 0.43
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)
Query: 238 GKYRCVESTSSGDREVSSVHCTGSPPIGRRRRCGNVPCPPRWRAASWSPCPRCGPATRTR 297
G RC++ + E + HC G RRCG+ CP R S C + G R
Sbjct: 310 GGRRCMQLGCTKSAEGKTDHCIAH---GGGRRCGHQGCPKAARGKS-GRCIKHGGGKRCS 365
Query: 298 IVGCVQ 303
+ GC++
Sbjct: 366 VEGCIR 371
>09_02_0167 + 5221910-5222516,5222826-5224642
Length = 807
Score = 32.3 bits (70), Expect = 1.00
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 36 LVSGLFSKPRLPLGYTFVATVPRGACRINVTEL 68
+VS LF+ L L YT V +PR CR+N ++
Sbjct: 494 VVSNLFNLRYLDLAYTRVKVIPRSLCRLNKLQM 526
>02_02_0557 + 11470259-11472307
Length = 682
Score = 32.3 bits (70), Expect = 1.00
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Query: 91 AVSAPGMYEAAGARFLYTRTAGLDNVHANGPIYHPIDIMILYTQPKPNIKYEYFTDSPID 150
AV+A G + G +F Y+ AG+ ++ +G D ++ T KP +K F +P+
Sbjct: 22 AVAAAGDGNS-GNQFAYSGFAGVKDLTLDGTAMVTPDGLLELTNGKPQVKGHAFHPTPLR 80
Query: 151 EGDEARPE 158
G+ + PE
Sbjct: 81 FGESSSPE 88
>07_01_0696 - 5261008-5263128
Length = 706
Score = 31.5 bits (68), Expect = 1.7
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 302 VQDHSKGITKISDHKCPPPKPPTTEMCNIPNCDDLSLGPVRRIESK 347
V H ++ I+DH C PP + + ++PN D S E K
Sbjct: 569 VNHHDDSVSDIADHGCSGSVPPPSAVVDLPNDSDQSCSGYYEAELK 614
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 29.5 bits (63), Expect = 7.0
Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
Query: 226 QCTRSCGGGIQLGKYRCVESTSSGDREVSSVHCTGSPPIGRRRRCGNVPCPPRWRAASWS 285
+C + CG Q G + C S + + S G R CG V PR
Sbjct: 639 RCNQPCGKNRQCGMHACNRSCHPSPCDPPPANGDASSSTGGRASCGQVCGAPRRECKHTC 698
Query: 286 PCPRCGPAT 294
P C P++
Sbjct: 699 TAP-CHPSS 706
>04_04_0891 +
29130494-29130904,29131043-29131102,29131203-29131409,
29131520-29131645,29131767-29131823,29131946-29132014
Length = 309
Score = 29.5 bits (63), Expect = 7.0
Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 7/105 (6%)
Query: 276 PPRWRAASWSPCPRCGPATRTRIVGCVQDHSKGITKISDHKCPPPKPPTTEMCNIPNC-D 334
PP RA +SP R R+R +G V T+ + P P PP T +P+ +
Sbjct: 31 PPSGRALPFSPLTR---TPRSRGLGTVTCFVPQGTE--SQQAPAPSPPPTVPVPVPSLEE 85
Query: 335 DLSLGPVRRIESKRTRNKELTDTFREGPVYTVSINTTESEIGPEY 379
+ + RRI ++ R T+ V + S+ T + Y
Sbjct: 86 EAAAAAARRIAERKARKLSERRTYLVAAVMS-SLGFTSMAVAAVY 129
>03_02_1030 - 13536511-13537929
Length = 472
Score = 29.5 bits (63), Expect = 7.0
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 318 PPPK--PPTTEMCNIPNCDDLSLGPVRRIESKRTRNKELTDTFREG 361
PPP PP + IPN D S P+ +E+ LT FR+G
Sbjct: 90 PPPASFPPGAAVPPIPNLPDASPAPLTYVEAAGDGLIALTSCFRDG 135
>11_01_0029 +
226459-226973,227053-227424,227533-227688,229513-229595,
229665-229728,230209-230596
Length = 525
Score = 29.1 bits (62), Expect = 9.3
Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 303 QDHSKGITKISDHKCPPPKPPTTEMCNIPNCDDLSLGPVRRIESKRTRNKELTDTFREGP 362
Q S T + PPP PP+T + L+ P+ R+ S + ++ L R P
Sbjct: 5 QQQSPPSTTATTTTSPPPPPPSTPPPASSSSSSLAKLPL-RLHSLASSSRSLLSALRRSP 63
Query: 363 VYTV 366
V T+
Sbjct: 64 VTTL 67
>07_03_0336 +
16911947-16912144,16912636-16912692,16912917-16913696,
16914666-16914713,16914795-16916032,16916776-16916860,
16917323-16917379
Length = 820
Score = 29.1 bits (62), Expect = 9.3
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 202 SVETGIDANVIGNRKFMWRILSFTQCTRSCGGGIQLGKYRCVESTSSG 249
SV +G D N I + + R+ + Q S G +Q GKYR S G
Sbjct: 735 SVTSGDDLNDIDRKPNIGRVAASIQRLESSIGKVQSGKYRGCSGVSMG 782
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.135 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,827,865
Number of Sequences: 37544
Number of extensions: 838237
Number of successful extensions: 2033
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2023
Number of HSP's gapped (non-prelim): 14
length of query: 535
length of database: 14,793,348
effective HSP length: 85
effective length of query: 450
effective length of database: 11,602,108
effective search space: 5220948600
effective search space used: 5220948600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)
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