GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001906-TA|BGIBMGA001906-PA|IPR010294|ADAM-TS Spacer 1,
IPR010909|PLAC, IPR000884|Thrombospondin, type I
         (535 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          24   3.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   4.8  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   4.8  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.8 bits (49), Expect = 3.6
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 263 PIGRRRRCGNVPCPPRWRAASWSPCPRCGPATRTRIVGCVQDHSKGITKI-SDHKCPPPK 321
           P G      +VP PPR    S+       P +     G        I  I    K PP  
Sbjct: 46  PFGVENTISSVPQPPRSLEGSYDSSSGDSPVSSHSSNGIHTGFGGSIITIPPTRKLPPLH 105

Query: 322 PPTTEMCNIP 331
           P T  + ++P
Sbjct: 106 PHTAMVTHLP 115


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 15/47 (31%), Positives = 18/47 (38%)

Query: 291 GPATRTRIVGCVQDHSKGITKISDHKCPPPKPPTTEMCNIPNCDDLS 337
           G  TRT       D    I+ + D + P P PP     NI   D  S
Sbjct: 625 GMRTRTVCGVAAGDPPLTISWLKDGQSPFPLPPNLASANISQLDPYS 671


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 4.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 230 SCGGGIQLGKYRCVESTSSGDREVSSVHCTGSPPIGRRRR 269
           +C     L K  C E TS GD + S +   G    G+ R+
Sbjct: 2   ACPFSRDLSKPGCDEQTSRGDNDRSRIARLGRDDGGKSRQ 41


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,465
Number of Sequences: 429
Number of extensions: 8442
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 535
length of database: 140,377
effective HSP length: 61
effective length of query: 474
effective length of database: 114,208
effective search space: 54134592
effective search space used: 54134592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)