GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001906-TA|BGIBMGA001906-PA|IPR010294|ADAM-TS Spacer 1,
IPR010909|PLAC, IPR000884|Thrombospondin, type I
         (535 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08040.1 68416.m00982 MATE efflux family protein low similari...    32   1.1  
At2g27980.1 68415.m03391 expressed protein                             32   1.1  
At3g22970.1 68416.m02896 expressed protein contains Pfam profile...    29   7.7  

>At3g08040.1 68416.m00982 MATE efflux family protein low similarity
           to enhanced disease susceptibility 5 [Arabidopsis
           thaliana] GI:16589070; contains TIGRfam profile:
           TIGR00797: MATE efflux family protein, Pfam profile
           PF01554 Uncharacterized membrane protein family
          Length = 526

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 4/105 (3%)

Query: 10  IVLFFVIGRESVLAGSNSRELRCGRRLVSGLFSKPRLPLGYTFVATVPRG-ACRINVTEL 68
           ++LF  + ++  L   N  +L+ GR L +GL    R  +  TF  T+    A R+  T +
Sbjct: 287 LILFVFLAKKVNLIPPNFGDLQFGRFLKNGLLLLAR-TIAVTFCQTLAAAMAARLGTTPM 345

Query: 69  ASSENYIALRLSNSSYILNGEFAVSAPGMYEAAGARFLYTRTAGL 113
           A+ +  I L++  +S +LN   AV+   +   + A   Y +   +
Sbjct: 346 AAFQ--ICLQVWLTSSLLNDGLAVAGQAILACSFAEKDYNKVTAV 388


>At2g27980.1 68415.m03391 expressed protein
          Length = 1037

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%)

Query: 441 LLCTGNCTSEVGLQTRSVI-CAHPETN---GTGGEADCKTAR--PHEQKSCEMRCPTIST 494
           +LC G+    +G   R+VI C   E     G   E D    +  P E+  C + C  I+T
Sbjct: 753 VLCRGHSFCRLGFNARTVIICDQCEKEFHVGCLKERDIADLKELPEEKWFCSLGCEEINT 812

Query: 495 LPPDLTIECEDKLNNCFL 512
              +L +  E+KL+N  L
Sbjct: 813 TLGNLIVRGEEKLSNNIL 830


>At3g22970.1 68416.m02896 expressed protein contains Pfam profile
           PF04720: Protein of unknown function (DUF506)
          Length = 370

 Score = 29.1 bits (62), Expect = 7.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 391 ECVSGGVSVVACKQEVCVVLILQDVLQERNLKQAEAARLPCH 432
           E   GGV        VC+  ++Q+ ++E N KQA+  R  C+
Sbjct: 63  EVQCGGVVTEFEPSSVCLAKMVQNFIEENNEKQAKCGRNRCN 104


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,683,197
Number of Sequences: 28952
Number of extensions: 621625
Number of successful extensions: 1230
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1229
Number of HSP's gapped (non-prelim): 3
length of query: 535
length of database: 12,070,560
effective HSP length: 84
effective length of query: 451
effective length of database: 9,638,592
effective search space: 4347004992
effective search space used: 4347004992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)