BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001906-TA|BGIBMGA001906-PA|IPR010294|ADAM-TS Spacer 1, IPR010909|PLAC, IPR000884|Thrombospondin, type I (535 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g08040.1 68416.m00982 MATE efflux family protein low similari... 32 1.1 At2g27980.1 68415.m03391 expressed protein 32 1.1 At3g22970.1 68416.m02896 expressed protein contains Pfam profile... 29 7.7 >At3g08040.1 68416.m00982 MATE efflux family protein low similarity to enhanced disease susceptibility 5 [Arabidopsis thaliana] GI:16589070; contains TIGRfam profile: TIGR00797: MATE efflux family protein, Pfam profile PF01554 Uncharacterized membrane protein family Length = 526 Score = 31.9 bits (69), Expect = 1.1 Identities = 27/105 (25%), Positives = 50/105 (47%), Gaps = 4/105 (3%) Query: 10 IVLFFVIGRESVLAGSNSRELRCGRRLVSGLFSKPRLPLGYTFVATVPRG-ACRINVTEL 68 ++LF + ++ L N +L+ GR L +GL R + TF T+ A R+ T + Sbjct: 287 LILFVFLAKKVNLIPPNFGDLQFGRFLKNGLLLLAR-TIAVTFCQTLAAAMAARLGTTPM 345 Query: 69 ASSENYIALRLSNSSYILNGEFAVSAPGMYEAAGARFLYTRTAGL 113 A+ + I L++ +S +LN AV+ + + A Y + + Sbjct: 346 AAFQ--ICLQVWLTSSLLNDGLAVAGQAILACSFAEKDYNKVTAV 388 >At2g27980.1 68415.m03391 expressed protein Length = 1037 Score = 31.9 bits (69), Expect = 1.1 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 6/78 (7%) Query: 441 LLCTGNCTSEVGLQTRSVI-CAHPETN---GTGGEADCKTAR--PHEQKSCEMRCPTIST 494 +LC G+ +G R+VI C E G E D + P E+ C + C I+T Sbjct: 753 VLCRGHSFCRLGFNARTVIICDQCEKEFHVGCLKERDIADLKELPEEKWFCSLGCEEINT 812 Query: 495 LPPDLTIECEDKLNNCFL 512 +L + E+KL+N L Sbjct: 813 TLGNLIVRGEEKLSNNIL 830 >At3g22970.1 68416.m02896 expressed protein contains Pfam profile PF04720: Protein of unknown function (DUF506) Length = 370 Score = 29.1 bits (62), Expect = 7.7 Identities = 14/42 (33%), Positives = 22/42 (52%) Query: 391 ECVSGGVSVVACKQEVCVVLILQDVLQERNLKQAEAARLPCH 432 E GGV VC+ ++Q+ ++E N KQA+ R C+ Sbjct: 63 EVQCGGVVTEFEPSSVCLAKMVQNFIEENNEKQAKCGRNRCN 104 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.320 0.135 0.428 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,683,197 Number of Sequences: 28952 Number of extensions: 621625 Number of successful extensions: 1230 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 1229 Number of HSP's gapped (non-prelim): 3 length of query: 535 length of database: 12,070,560 effective HSP length: 84 effective length of query: 451 effective length of database: 9,638,592 effective search space: 4347004992 effective search space used: 4347004992 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 62 (29.1 bits)
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