GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001905-TA|BGIBMGA001905-PA|IPR013017|NHL,
IPR000720|Peptidyl-glycine alpha-amidating monooxygenase,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
         (370 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   2.7  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   3.5  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    22   6.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   8.1  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 34  DDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNV 66
           +D LKNLE  ++KD   L  +    WP +  N+
Sbjct: 587 NDGLKNLEIHVTKDTDTLDNEMRGAWPLKLQNL 619


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 217 NAAGTLLLTIPAYSDTWSLNLPHSVTLLEH 246
           N  GT+L   P+  D   +NL HS  L  H
Sbjct: 285 NTLGTMLSIHPSKLDVEQMNLLHSNDLNMH 314


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/21 (38%), Positives = 13/21 (61%)

Query: 222 LLLTIPAYSDTWSLNLPHSVT 242
           L+L IPAY   W ++   S++
Sbjct: 285 LILGIPAYGRAWKMDEDSSIS 305


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 240 SVTLLEHLDLVCVADRENMRIVCPK 264
           ++T LE  +   V  RE+ R+ CPK
Sbjct: 211 AITKLEQWNHSKVHIREDKRLTCPK 235


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,957
Number of Sequences: 317
Number of extensions: 4586
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 4
length of query: 370
length of database: 114,650
effective HSP length: 58
effective length of query: 312
effective length of database: 96,264
effective search space: 30034368
effective search space used: 30034368
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)