GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001905-TA|BGIBMGA001905-PA|IPR013017|NHL,
IPR000720|Peptidyl-glycine alpha-amidating monooxygenase,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    29   1.4  
SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po...    28   1.8  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    28   2.4  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    27   4.2  
SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    27   4.2  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   9.8  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      26   9.8  

>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%)

Query: 209  CNNQIVKFNAAGTLLLTIPAYSDTWSLNLPHSVTLLEHLDLVCVADRENMRIVCPKAGLK 268
            C  Q+   +   +L+ TI    D W   L + V  L+H     VAD+  + ++   +   
Sbjct: 1166 CKTQLELVDLLNSLMTTITTLEDRWLFALLYRVGWLDH---KFVADQ--LAVLYMSSNAL 1220

Query: 269  SYADPLEPPTIIEDPTLGRVFAVTSHGD 296
               +PL  P ++  P + R F  T+ GD
Sbjct: 1221 QTGNPL--PQVVPSPLVDRFF--TTSGD 1244


>SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)

Query: 193 SVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAYSDTWSLNLPHSVTLLEHLDLV 250
           SV  A +G +   D     +IVK    GT ++  PA+SD   LNL  +V  + HLD++
Sbjct: 217 SVPFAVSGGVSEEDEEGYQRIVKKFQWGTFVIDDPAHSD--FLNL-KTVLFISHLDIL 271


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 132 IFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTLTIGE 174
           I++  H L +      ++ D+A H V +Y  S     T+ +GE
Sbjct: 363 IYHQWHSLRIREQIASFMLDIADHNVKRYGKSEESSSTMNVGE 405


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 142 DHHDNVWVTDVAKHQVYKYTPSNHRYPTLTIGE-PFTAGLPFRHRVLFC 189
           D HD     ++A+H +  +T       TL IGE PF     FR  + +C
Sbjct: 514 DEHDETKDRNIARHVINLHTNLQESSETLAIGEIPFD---KFRRYINYC 559


>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 116 VLDPGSGSVLHSW-GAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTLTIGE 174
           +L PG G    +W   Y+       TL   +NV   ++ K+ V     SN R P  TI +
Sbjct: 4   ILFPGQGVDWKTWMQPYLENNIVQNTLKEAENVTEIEIRKYIVEAEAKSNLRQPITTIAQ 63

Query: 175 P 175
           P
Sbjct: 64  P 64


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 57  KDWPQQSLNVGQITAVSINSLGQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTI 114
           K + Q SL+   +TAV ++++ + ++    D +     FN+ N   + D G  +   I
Sbjct: 480 KSFGQSSLSGKPVTAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLDVGSSITHAI 537


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 349 YVSEIGPNKIWKFELTDVYDKK 370
           ++  IG  +I+ FELTD+Y+ K
Sbjct: 110 FIHGIGLPEIFHFELTDIYEGK 131


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,607
Number of Sequences: 5004
Number of extensions: 84678
Number of successful extensions: 164
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 7
length of query: 370
length of database: 2,362,478
effective HSP length: 74
effective length of query: 296
effective length of database: 1,992,182
effective search space: 589685872
effective search space used: 589685872
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)