BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001905-TA|BGIBMGA001905-PA|IPR013017|NHL, IPR000720|Peptidyl-glycine alpha-amidating monooxygenase, IPR011044|Quinoprotein amine dehydrogenase, beta chain-like, IPR001258|NHL repeat (370 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 29 1.4 SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces po... 28 1.8 SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 28 2.4 SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi... 27 4.2 SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1... 27 4.2 SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 26 9.8 SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 26 9.8 >SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 1337 Score = 28.7 bits (61), Expect = 1.4 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 9/88 (10%) Query: 209 CNNQIVKFNAAGTLLLTIPAYSDTWSLNLPHSVTLLEHLDLVCVADRENMRIVCPKAGLK 268 C Q+ + +L+ TI D W L + V L+H VAD+ + ++ + Sbjct: 1166 CKTQLELVDLLNSLMTTITTLEDRWLFALLYRVGWLDH---KFVADQ--LAVLYMSSNAL 1220 Query: 269 SYADPLEPPTIIEDPTLGRVFAVTSHGD 296 +PL P ++ P + R F T+ GD Sbjct: 1221 QTGNPL--PQVVPSPLVDRFF--TTSGD 1244 >SPBC19F8.01c |spn7|SPBC21.08c|septin Spn7|Schizosaccharomyces pombe|chr 2|||Manual Length = 428 Score = 28.3 bits (60), Expect = 1.8 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query: 193 SVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAYSDTWSLNLPHSVTLLEHLDLV 250 SV A +G + D +IVK GT ++ PA+SD LNL +V + HLD++ Sbjct: 217 SVPFAVSGGVSEEDEEGYQRIVKKFQWGTFVIDDPAHSD--FLNL-KTVLFISHLDIL 271 >SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pombe|chr 1|||Manual Length = 450 Score = 27.9 bits (59), Expect = 2.4 Identities = 12/43 (27%), Positives = 21/43 (48%) Query: 132 IFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTLTIGE 174 I++ H L + ++ D+A H V +Y S T+ +GE Sbjct: 363 IYHQWHSLRIREQIASFMLDIADHNVKRYGKSEESSSTMNVGE 405 >SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schizosaccharomyces pombe|chr 1|||Manual Length = 720 Score = 27.1 bits (57), Expect = 4.2 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%) Query: 142 DHHDNVWVTDVAKHQVYKYTPSNHRYPTLTIGE-PFTAGLPFRHRVLFC 189 D HD ++A+H + +T TL IGE PF FR + +C Sbjct: 514 DEHDETKDRNIARHVINLHTNLQESSETLAIGEIPFD---KFRRYINYC 559 >SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 318 Score = 27.1 bits (57), Expect = 4.2 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 116 VLDPGSGSVLHSW-GAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTLTIGE 174 +L PG G +W Y+ TL +NV ++ K+ V SN R P TI + Sbjct: 4 ILFPGQGVDWKTWMQPYLENNIVQNTLKEAENVTEIEIRKYIVEAEAKSNLRQPITTIAQ 63 Query: 175 P 175 P Sbjct: 64 P 64 >SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosaccharomyces pombe|chr 3|||Manual Length = 902 Score = 25.8 bits (54), Expect = 9.8 Identities = 14/58 (24%), Positives = 28/58 (48%) Query: 57 KDWPQQSLNVGQITAVSINSLGQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTI 114 K + Q SL+ +TAV ++++ + ++ D + FN+ N + D G + I Sbjct: 480 KSFGQSSLSGKPVTAVMLDNVNRILVTASLDGILKFWDFNKGNLIDSLDVGSSITHAI 537 >SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual Length = 1489 Score = 25.8 bits (54), Expect = 9.8 Identities = 10/22 (45%), Positives = 16/22 (72%) Query: 349 YVSEIGPNKIWKFELTDVYDKK 370 ++ IG +I+ FELTD+Y+ K Sbjct: 110 FIHGIGLPEIFHFELTDIYEGK 131 Database: spombe Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.319 0.137 0.426 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,893,607 Number of Sequences: 5004 Number of extensions: 84678 Number of successful extensions: 164 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 161 Number of HSP's gapped (non-prelim): 7 length of query: 370 length of database: 2,362,478 effective HSP length: 74 effective length of query: 296 effective length of database: 1,992,182 effective search space: 589685872 effective search space used: 589685872 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 54 (25.8 bits)
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