Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001905-TA|BGIBMGA001905-PA|IPR013017|NHL,
IPR000720|Peptidyl-glycine alpha-amidating monooxygenase,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
(370 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34) 152 5e-37
SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36) 82 8e-16
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 2e-05
SB_3355| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.002
SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17) 35 0.12
SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013) 33 0.37
SB_42304| Best HMM Match : NHL (HMM E-Value=0) 33 0.49
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.65
SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24) 31 1.1
SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_11461| Best HMM Match : NHL (HMM E-Value=0) 31 2.0
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 30 2.6
SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0) 29 6.1
SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_29120| Best HMM Match : 7tm_1 (HMM E-Value=1e-07) 29 6.1
SB_46018| Best HMM Match : I-set (HMM E-Value=0.025) 29 8.0
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
SB_24398| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.0
>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
Length = 750
Score = 152 bits (368), Expect = 5e-37
Identities = 96/245 (39%), Positives = 129/245 (52%), Gaps = 26/245 (10%)
Query: 133 FYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTLTIGEPFTAGLPFRHRVLFCMPT 192
FYMPHGLT+DH DN W+TDVA HQV+KY P L +GE G +H FC P
Sbjct: 150 FYMPHGLTIDHEDNTWITDVALHQVHKYGTDGSSEPVLVLGEMLRPGSDDKH---FCQPN 206
Query: 193 SVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAYSDTWSLNLP---------HSVTL 243
VAI +TG +VADGYCN++++KF+ G LL L P HS+ L
Sbjct: 207 DVAIETTGVFYVADGYCNSRVMKFSPEGKLLEQYGKAMSARGLGSPPPLGVFDVVHSLAL 266
Query: 244 LEHLDLVCVADRENMRIVCPKAGLKSYADPLEPPTIIEDPTLGRVFAV--TSH-GDTIYA 300
+ + VADREN R+ + K E I V+AV SH G ++
Sbjct: 267 DQTHHHLYVADRENGRV--QRLDTKKGRFDRE---ITNKEFGASVYAVDFNSHDGGVLHV 321
Query: 301 VNGPT---SQNIAVRGFTVNAVYGNILDTWEPTTG--FTNPHSLAVTRNGSHLYVSEIGP 355
VNG + + IAV+GFTV G +L W P G FT PH +A + + + L+V++ GP
Sbjct: 322 VNGESVFGGKRIAVQGFTVRTSDGALLGKW-PGQGNFFTQPHDIASSADNNELFVTQTGP 380
Query: 356 NKIWK 360
N++WK
Sbjct: 381 NRVWK 385
Score = 39.1 bits (87), Expect = 0.006
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 51 LRPQEVKDWPQQSLN-VGQITAVSINSLGQPVIFHRADRVWD 91
LR V++WP +GQ++AV+++ G V+FHR R WD
Sbjct: 106 LRYHLVENWPLLGQETLGQVSAVALDMRGNVVVFHRGSRAWD 147
>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
Length = 821
Score = 81.8 bits (193), Expect = 8e-16
Identities = 43/107 (40%), Positives = 64/107 (59%), Gaps = 4/107 (3%)
Query: 55 EVKD-WPQQ-SLNVGQITAVSINSLGQPVIFHRADRVWDENTFNESNAYQNFD-KGPIVE 111
E++D WP +L++GQ++ V+I+ G I HRA R WD NTF E+ + + P+
Sbjct: 170 ELQDHWPSDPTLSIGQVSGVAIDLDGNVTILHRAGRPWDGNTFYENTDVLRKELREPLKT 229
Query: 112 DTILVLDPGSGSVLHSWGAYI-FYMPHGLTLDHHDNVWVTDVAKHQV 157
+ +L L+P S V+ G+ F +PHGL+ D H N+W TDV HQV
Sbjct: 230 NVLLWLNPQSELVMREEGSKAGFVLPHGLSFDQHGNMWATDVGLHQV 276
Score = 52.4 bits (120), Expect = 6e-07
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 168 PTLTIGEPFTAGLPF-RHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAG 220
P++ +G + G ++ FC PT VA+ G IF+ADGYCN ++VK + G
Sbjct: 529 PSMVLGTKYEPGSTLSEEKIQFCKPTDVAVDEEGNIFIADGYCNQRVVKLDKNG 582
>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 47.6 bits (108), Expect = 2e-05
Identities = 44/173 (25%), Positives = 69/173 (39%), Gaps = 21/173 (12%)
Query: 94 TFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAY-----IFYMPHGLTLDHHDNVW 148
T N+ + DK + D + DP + S+G F +PHG+ D DN++
Sbjct: 1448 TANDDGILERLDKSGDLVDNRIPTDPSLSRFVKSFGIAGGGDGCFNLPHGVATDPSDNIY 1507
Query: 149 VTDVAKHQVYKYTPSNHRYPTLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGY 208
V D ++ +TP + Y + + P VAI G+I D Y
Sbjct: 1508 VADSGNSRLQIFTPEGY-YMRKVVSDQLN------------RPWGVAITPRGQIVTTD-Y 1553
Query: 209 CNNQIVKFNAAGTLLLTIPAYSD-TWSLNLPHSVTLLEHLDLVCVADRENMRI 260
N+++ F+ G L + D N P +T+ V VADR N R+
Sbjct: 1554 NNHKVFVFHRNGKLDFCFGSRGDGDGEFNNPAGITIDSDGQFV-VADRSNHRV 1605
Score = 34.3 bits (75), Expect = 0.16
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 133 FYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTLTIGEPFTAGLPFRHRVLFCMPT 192
F P G+T+D V D + H+V + P + T G+ GL PT
Sbjct: 1581 FNNPAGITIDSDGQFVVADRSNHRVQIFQPDG-TFVTKFGGKGTGDGL-------MRFPT 1632
Query: 193 SVAIASTGEIFVADGYCNNQIVKFNAA 219
VA+ G ++VAD + NN+I F+ A
Sbjct: 1633 GVAVDKAGHLYVADTF-NNRIQVFSLA 1658
>SB_3355| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 752
Score = 41.1 bits (92), Expect = 0.001
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 188 FCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAY-SDTWSLNLPHSVTLLEH 246
F P VA++ TGEI V+D N + F+A G ++ I Y +D LN P V +
Sbjct: 474 FTHPHGVAVSETGEIAVSDTQ-KNCVHVFDAEGRKVMDIGGYGTDDGQLNYPAGVAFDKG 532
Query: 247 LDLVCVADRENMRI 260
+ VADR+N R+
Sbjct: 533 NKNLIVADRDNHRV 546
>SB_18583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 965
Score = 40.7 bits (91), Expect = 0.002
Identities = 58/233 (24%), Positives = 98/233 (42%), Gaps = 26/233 (11%)
Query: 133 FYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTL-TIGEPFTA-GLPFRHRVLFCM 190
F P G+ +D+ ++V D Y NHR L T GE T+ G R F
Sbjct: 701 FKSPFGVAIDNEGRIYVAD-------SY---NHRVQVLGTRGEFITSFGSHGERRGEFNC 750
Query: 191 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAY-SDTWSLNLPHSVTLLEHLDL 249
PT V I + G + + D NN++ N G + + P + + + ++
Sbjct: 751 PTDVDIDNRGRVIICDN-GNNRVQVLNRNGGFIGKFGREGTGNGYFKSPWGLAVTANNEI 809
Query: 250 VCVADRENMRI--VCPKAG-LKSYADPLEPPTIIEDPTLGRVFAVTSHGDTIYAVNGPTS 306
V VAD EN R+ P+ + + P + P P V + D I+ + S
Sbjct: 810 V-VADMENNRVQMFSPEGKFMMKFGSPGDRPGQFNAP---GYLLVNNEDDQIFVSD---S 862
Query: 307 QNIAVRGFTVNAVYGNILDTWEPTTG-FTNPHSLAVTRNGSHLYVSEIGPNKI 358
+N ++ F +N VY + G F +P LA+ G HL ++++G +++
Sbjct: 863 KNHRIQVFDMNGVYIRSFGSQGAGKGQFMHPRGLAMDIAG-HLIIADMGNHRL 914
Score = 32.7 bits (71), Expect = 0.49
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 4/108 (3%)
Query: 156 QVYKYTPSNHRYPTLTIGEPF--TAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQI 213
Q++ NHR + + + G + F P +A+ G + +AD N+++
Sbjct: 856 QIFVSDSKNHRIQVFDMNGVYIRSFGSQGAGKGQFMHPRGLAMDIAGHLIIAD-MGNHRL 914
Query: 214 VKFNAAGTLLLTIPAY-SDTWSLNLPHSVTLLEHLDLVCVADRENMRI 260
N+AG + I + S L+ P SV ++ + + V+D N RI
Sbjct: 915 QILNSAGEFVKEIGSEGSGDGQLSFPESVAIMPNSGYIVVSDLSNNRI 962
>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
Length = 415
Score = 34.7 bits (76), Expect = 0.12
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 134 YMPHGLTLDHHDNVWVTDVAKHQVYKY 160
+ PHG+T+D DN+ V D H+++K+
Sbjct: 348 WQPHGVTVDKDDNILVCDTGNHRLHKF 374
>SB_35971| Best HMM Match : RRM_1 (HMM E-Value=0.013)
Length = 665
Score = 33.1 bits (72), Expect = 0.37
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 113 TILVLDPGSGSVLHSWGAY---IFYMPHGLTLDHHDNVWVTDVA-KHQVYKYTPSNHRYP 168
T+++ P S S+ H Y I Y P + H +++ T + +H YP
Sbjct: 256 TVIIYTPPSSSIPHRHHLYTTAIIYTPLSSPIPHRHHLYTTVIIYTPPSSSIHHCHHLYP 315
Query: 169 TLTIGEPFTAGLPFRH 184
T+ I P ++ +P RH
Sbjct: 316 TVIIYTPPSSSIPHRH 331
Score = 31.9 bits (69), Expect = 0.86
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 113 TILVLDPGSGSVLHSWGAYI--FYMPHGLTLDHHDNVWVTDVA-KHQVYKYTPSNHRYPT 169
T+++ P S S+ H YI Y P ++ H +++ T + +H YPT
Sbjct: 376 TVIIYTPPSSSIHHRH-LYITVIYTPPSSSIHHRHHLYTTAIIYTPPSSSIHHCHHLYPT 434
Query: 170 LTIGEPFTAGLPFRH 184
+ I P ++ +P+ H
Sbjct: 435 VIIYTPLSSSIPYCH 449
Score = 30.3 bits (65), Expect = 2.6
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query: 113 TILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQ-VYKYTPSN------- 164
T+++ P S S+ H Y P ++ H + + T + + V +TP +
Sbjct: 532 TVIIYTPPSSSIPHRHHLY----PPSSSIPHRHHPYPTVIILYTTVIIHTPPSSSIPHRH 587
Query: 165 HRYPTLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGY 208
H YPT+ I P ++ +P RH PT + I + I+ Y
Sbjct: 588 HPYPTVIIHTPPSSSIPHRHHP---YPTVIYIPPSPSIYFRHPY 628
Score = 29.9 bits (64), Expect = 3.5
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 113 TILVLDPGSGSVLHSWGAY---IFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPS-NHRYP 168
T+L+ P S S+ H Y I Y P ++ ++ + + T + P H YP
Sbjct: 473 TVLIYTPPSSSIPHCHHLYPTVIIYTPPSSSI-YYRHPYPTVIIHTPPSSSIPHCYHLYP 531
Query: 169 TLTIGEPFTAGLPFRHRV 186
T+ I P ++ +P RH +
Sbjct: 532 TVIIYTPPSSSIPHRHHL 549
Score = 28.7 bits (61), Expect = 8.0
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 113 TILVLDPGSGSVLHSWGAY---IFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPT 169
T ++ P S S+ H Y I Y P ++ + + + T + P +H Y T
Sbjct: 414 TAIIYTPPSSSIHHCHHLYPTVIIYTPLSSSIPYCHHPYPTVIIHTPPSSSIPHHHPYTT 473
Query: 170 LTIGEPFTAGLPFRHRV 186
+ I P ++ +P H +
Sbjct: 474 VLIYTPPSSSIPHCHHL 490
>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
Length = 1279
Score = 32.7 bits (71), Expect = 0.49
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 191 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAYSD-TWSLNLPHSVTLLEHLDL 249
PT VA+ G I VAD N++I F++ G + + LN PH + L +
Sbjct: 295 PTGVAVMQNGHIIVAD-RDNHRIQVFSSDGRYFAKFGSKGEGDGQLNDPHGLALTPDGN- 352
Query: 250 VCVADRENMR 259
+C+AD N R
Sbjct: 353 ICIADFRNNR 362
>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 32.3 bits (70), Expect = 0.65
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 112 DTILVLDPGSGSVLHSWGAY-----IFYMPHGLTLDHHDNVWVTDVAKHQVYKYTP 162
DTI V DP SG L+S G F P GL +D D ++V D H+V P
Sbjct: 662 DTIQVFDP-SGDYLYSVGGTGHGEGRFREPRGLHVDARDRLFVCDSGNHRVQVMAP 716
>SB_28400| Best HMM Match : PMSR (HMM E-Value=1.7e-24)
Length = 766
Score = 31.5 bits (68), Expect = 1.1
Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 3/78 (3%)
Query: 90 WDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWG---AYIFYMPHGLTLDHHDN 146
W E ES + G + D+++++D GS SV + A +FY+ L+H
Sbjct: 460 WKEAIAEESASNAVDSPGSSLADSVIIIDLGSSSVKAGFAQEEAQVFYISLIGILEHAFL 519
Query: 147 VWVTDVAKHQVYKYTPSN 164
D KH+V P N
Sbjct: 520 SLKVDPVKHKVIMTIPQN 537
>SB_24395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 887
Score = 31.1 bits (67), Expect = 1.5
Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 191 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAYSDTWSLNLPHSVTLLEHLDLV 250
P VA+ +G IFVAD + NN+I F G + ++ + V
Sbjct: 672 PAGVAVDKSGNIFVAD-HGNNRIQAFTQEGEFIRKFGGKGTGLGQMKGPCGAAVDGENRV 730
Query: 251 CVADRENMRI 260
VADR+N RI
Sbjct: 731 LVADRDNHRI 740
>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
Length = 819
Score = 30.7 bits (66), Expect = 2.0
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 136 PHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTLTIGEPFTAGLPFRHRVLFCMPTSVA 195
P G+ + H +V V+D KHQ+ + + LT P T G F P +A
Sbjct: 500 PIGIAVTKHGDVIVSDNEKHQLKVFF-----HEDLT--RPKTIGANGIGICKFAFPRGIA 552
Query: 196 IASTGEIFVADGYCNNQIVKFNAAGTLLLTI-PAYSDTWSLNLPHSVTLLEHLDLVCVAD 254
+ I VAD N++I G + + D N P+ V ++ V VAD
Sbjct: 553 LDKEENILVADSQ-NHRIQVITIEGQYIGSFGNVGDDPGCFNTPYDVA-IDTSGNVLVAD 610
Query: 255 RENMRI 260
+N R+
Sbjct: 611 TKNHRV 616
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 30.3 bits (65), Expect = 2.6
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 149 VTDVAKHQVYKYTPSNHRYPTLTIGEPFTAGLPFRHRVLFCMPT 192
VT+ Y++T S +RYPTLT+ P +RH L+ PT
Sbjct: 777 VTNPPVSDTYRHT-SFYRYPTLTVTHP-PVSHTYRHTSLYRYPT 818
>SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)
Length = 839
Score = 29.1 bits (62), Expect = 6.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 169 TLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYC 209
TLT+ E TA + + H V +CM + + E+F+ G C
Sbjct: 224 TLTL-ETLTAFVSYVHLVKYCMESGIPEKDASELFIFIGAC 263
Score = 29.1 bits (62), Expect = 6.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 169 TLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYC 209
TLT+ E TA + + H V +CM + + E+F+ G C
Sbjct: 635 TLTL-ETLTAFVSYVHLVKYCMESGIPEKDASELFIFIGAC 674
>SB_3354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 632
Score = 29.1 bits (62), Expect = 6.1
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
Query: 188 FCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAY-SDTWSLNLPHSVTLLEH 246
F P VA+++ G+I V+D + + F G L+ SD P ++ +
Sbjct: 414 FLQPHGVAVSTIGQIVVSDS-LKHHLQVFTPDGNLMFDFGGEGSDDGKFMHPMAIAFDKS 472
Query: 247 LDLVCVADRENMRI--VCPKAG--LKSYADPLE 275
+ VAD +N RI V K G + ++DPL+
Sbjct: 473 EKCLYVADSDNNRIQVVDVKNGRYVPLFSDPLQ 505
>SB_29120| Best HMM Match : 7tm_1 (HMM E-Value=1e-07)
Length = 298
Score = 29.1 bits (62), Expect = 6.1
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 152 VAKHQVYKYT--PSNHRYPTLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYC 209
+A H Y PSN + P L +G TAGL L P +A GE F C
Sbjct: 31 LALHYTYNKIKKPSNKKIPHLLVGALSTAGLGI---ALCSYPPFIASRFVGEWFYGASVC 87
Query: 210 N 210
N
Sbjct: 88 N 88
>SB_46018| Best HMM Match : I-set (HMM E-Value=0.025)
Length = 1122
Score = 28.7 bits (61), Expect = 8.0
Identities = 14/63 (22%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 196 IASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAYSDTWSLNLPHSVTLLEHLD--LVCVA 253
+ +T + + G+C+ + L ++ Y+DTW L++ + + H + L CV
Sbjct: 275 LRATSLVHIFYGFCSLLLFHMTVIFMLQSSMNEYNDTWKLSICKAQMIARHYEIRLTCVF 334
Query: 254 DRE 256
R+
Sbjct: 335 TRQ 337
>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1712
Score = 28.7 bits (61), Expect = 8.0
Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 134 YMPHGLTLDHHD-NVWVTDVAKHQV 157
+ P+GLT+DH+D ++ TD +H +
Sbjct: 324 FWPNGLTIDHNDKRIYWTDAKQHHI 348
>SB_24398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 28.7 bits (61), Expect = 8.0
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 9/78 (11%)
Query: 136 PHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTLTIGEPFTAGLPFRHRVLFCMPTSVA 195
P G+ +D + ++D H+V ++P Y T G F P+ +A
Sbjct: 431 PAGIAIDPEGFIIISDFQNHRVQVHSPEGEFYATF--------GSEGNIEGQFKFPSGIA 482
Query: 196 IASTGEIFVADGYCNNQI 213
+ G + VAD + N++I
Sbjct: 483 LTLDGHVIVADSH-NHRI 499
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.319 0.137 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,455,340
Number of Sequences: 59808
Number of extensions: 581035
Number of successful extensions: 1169
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1128
Number of HSP's gapped (non-prelim): 50
length of query: 370
length of database: 16,821,457
effective HSP length: 83
effective length of query: 287
effective length of database: 11,857,393
effective search space: 3403071791
effective search space used: 3403071791
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 61 (28.7 bits)
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