Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001905-TA|BGIBMGA001905-PA|IPR013017|NHL,
IPR000720|Peptidyl-glycine alpha-amidating monooxygenase,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
(370 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88175-5|AAB42278.2| 350|Caenorhabditis elegans Hypothetical pr... 206 2e-53
U80438-6|AAB37637.2| 663|Caenorhabditis elegans Hypothetical pr... 117 2e-26
Z46787-15|CAC42257.1| 791|Caenorhabditis elegans Hypothetical p... 31 0.99
Z35596-3|CAA84644.2| 791|Caenorhabditis elegans Hypothetical pr... 31 0.99
AF257518-1|AAF68999.1| 791|Caenorhabditis elegans HERG-like pot... 31 0.99
Z81456-2|CAB03811.1| 317|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical pr... 29 4.0
L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleo... 29 4.0
AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc fi... 29 4.0
Z68006-3|CAA91997.2| 633|Caenorhabditis elegans Hypothetical pr... 29 5.3
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr... 28 9.3
U40422-5|AAA81448.2| 494|Caenorhabditis elegans Hypothetical pr... 28 9.3
>U88175-5|AAB42278.2| 350|Caenorhabditis elegans Hypothetical
protein F21F3.1 protein.
Length = 350
Score = 206 bits (503), Expect = 2e-53
Identities = 123/342 (35%), Positives = 191/342 (55%), Gaps = 19/342 (5%)
Query: 26 DYFNYGANDDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHR 85
+YF YG D + +E V + +E+ S +GQ++ +++N G V FHR
Sbjct: 23 EYF-YG---DEQQPIEEGAENSAVFEQDRELIGLFNPSKEIGQVSGLAVNKNGHIVAFHR 78
Query: 86 ADRVWDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHD 145
+ RVWDE +FN+ + N D G I TI ++ V+ +GA +FYMPHGLT+D++
Sbjct: 79 SGRVWDEKSFNDHETF-NKDLGVINNKTIAIISREK-KVIDEFGAGLFYMPHGLTIDNNG 136
Query: 146 NVWVTDVAKHQVYKYTPSNHRYPTLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVA 205
+ WVTDV HQV+K + +++GE G H FC PT VA+A G IFVA
Sbjct: 137 DYWVTDVGSHQVHKIDAKTQKI-VMSLGEKMVPGEDQAH---FCKPTDVAVAKNGHIFVA 192
Query: 206 DGYCNNQIVKFNAAGTLLLTIPAYSD---TWSLNLPHSVTLLEHLDLVCVADRENMRIVC 262
DGYCN++I+KF+A G L+ I A ++ +PHS++L+E +++VCVADREN R+ C
Sbjct: 193 DGYCNSRILKFDAKGNLMAQINAATEENQPSEFVVPHSLSLIEDMNIVCVADRENQRVQC 252
Query: 263 PKAGLKSYADPLEPPTIIEDPT-LGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYG 321
AGL L I T +GRVFA+ + V G S+++ + F+++ G
Sbjct: 253 FSAGLSEGDRTLPTGIPITSATDIGRVFAIREREHYLIGVTG-NSEDVEAQMFSIDMQTG 311
Query: 322 NILDTWEPTTGFTNPHSLAVTRNGSHLYVSEIGPNKIWKFEL 363
+T+ G N H+LA+ +G ++VS++ P++I + L
Sbjct: 312 K-TETF--AKGVRNTHALAIAADGV-MFVSQLEPSRILEIRL 349
>U80438-6|AAB37637.2| 663|Caenorhabditis elegans Hypothetical
protein T19B4.1 protein.
Length = 663
Score = 117 bits (281), Expect = 2e-26
Identities = 90/319 (28%), Positives = 147/319 (46%), Gaps = 34/319 (10%)
Query: 64 LNVGQITAVSINSLGQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLD-PGSG 122
+ +GQ+ ++ N+ Q ++F RA RVWD +TF+ N DK PI + ILV+ G+
Sbjct: 355 VKLGQVAGLAFNNEQQLLVFQRAGRVWDASTFDNYNIL--LDKKPIADPVILVISYSGNQ 412
Query: 123 SVL-HSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTL-TIGEPFTAGL 180
+ L G FY+PHG+ +D V+ TDV H V K+ + + T GE G
Sbjct: 413 TKLERKLGGGQFYLPHGIYVDKDGFVYTTDVGSHTVAKWKIEGNELKNIWTSGELLMPGS 472
Query: 181 PFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL--LTIPAYSDTWSLNLP 238
H +C PT + +++V DGYCN+++V + G + +P D NLP
Sbjct: 473 DQHH---YCKPTGITRVE-DQLYVTDGYCNSRVVVLDLNGKRIRQFGLPG-EDAGQFNLP 527
Query: 239 HSVTLLEHLDLVCVADRENMRIVCPKAGLKSYADPLEPPTIIEDPTLGRVFAVTSHGDTI 298
H + + + + V DREN R+ + + +E + +++ SH D +
Sbjct: 528 HDI-VSDSAGRLLVTDRENGRV----QHMTTQGHVIEE---FKSTMFTNIYSAASHEDYV 579
Query: 299 YAVNGPTSQNIAVRGFTV---NAVYGNILDTWEPTT---------GFTNPHSLAVTRNGS 346
+ V G G V + G I + PTT F PH L V +G
Sbjct: 580 FMVPGRPIMGHETEGIAVFVGRSGTGLIEYAFGPTTKGKREQMGPQFGQPHCLRVCPDGG 639
Query: 347 HLYVSEI--GPNKIWKFEL 363
H++V +I G ++W+F++
Sbjct: 640 HIFVGDIAEGKARLWQFKI 658
>Z46787-15|CAC42257.1| 791|Caenorhabditis elegans Hypothetical
protein C30D11.1 protein.
Length = 791
Score = 31.5 bits (68), Expect = 0.99
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 114 ILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPT 169
+L+L + +++ W A I+Y L H + W+ ++K YT +N PT
Sbjct: 225 VLLLLMATFALIAHWLACIWYAIGSAELSHKEYTWLHQLSKQLAQPYTSTNGTIPT 280
>Z35596-3|CAA84644.2| 791|Caenorhabditis elegans Hypothetical
protein C30D11.1 protein.
Length = 791
Score = 31.5 bits (68), Expect = 0.99
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 114 ILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPT 169
+L+L + +++ W A I+Y L H + W+ ++K YT +N PT
Sbjct: 225 VLLLLMATFALIAHWLACIWYAIGSAELSHKEYTWLHQLSKQLAQPYTSTNGTIPT 280
>AF257518-1|AAF68999.1| 791|Caenorhabditis elegans HERG-like
potassium channel protein.
Length = 791
Score = 31.5 bits (68), Expect = 0.99
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 114 ILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPT 169
+L+L + +++ W A I+Y L H + W+ ++K YT +N PT
Sbjct: 225 VLLLLMATFALIAHWLACIWYAIGSAELSHKEYTWLHQLSKQLAQPYTSTNGTIPT 280
>Z81456-2|CAB03811.1| 317|Caenorhabditis elegans Hypothetical
protein B0462.3 protein.
Length = 317
Score = 30.3 bits (65), Expect = 2.3
Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 37 LKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHRADRVWDENTFN 96
LK+L + ++ ++L PQ P+ ++VG ++AV S I R+ DE TF+
Sbjct: 43 LKSLNVRNAEIRIIL-PQH----PEIHISVGSMSAVLERSAANVRIIDRSRENSDEKTFD 97
Query: 97 ESNAYQNF-DKGPIVEDTILVLDPGSGSVLHSW 128
++ NF ++ ++ ++++P H+W
Sbjct: 98 ITSGCLNFTERDYLLHFEDVIINPRINVSCHTW 130
>Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical
protein F56A12.1 protein.
Length = 335
Score = 29.5 bits (63), Expect = 4.0
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 292 TSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNILDTWEPTTGFT-NP 336
T+ G + P S N+A F +N +YG + D+ FT NP
Sbjct: 290 TNGGSDFLPIITPQSFNLAAAPFNMNMIYGTLRDSQSDNDQFTFNP 335
>L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleoli
protein 1 protein.
Length = 851
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 191 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 223
P V I S GE+ VAD + N + F+ GT++
Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798
>AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc
finger protein Ncl-1 protein.
Length = 851
Score = 29.5 bits (63), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 191 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 223
P V I S GE+ VAD + N + F+ GT++
Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798
>Z68006-3|CAA91997.2| 633|Caenorhabditis elegans Hypothetical
protein K09C8.4 protein.
Length = 633
Score = 29.1 bits (62), Expect = 5.3
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 322 NILDTWEPTTGFTNPHSLAVTRNGSHLYVSEIGPNKIW 359
NI D W+ F N + N S Y+++ G +W
Sbjct: 142 NIFDLWKQFRNFNNSQVFGMVENLSDWYLNKDGKKSVW 179
>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical
protein T01C4.1 protein.
Length = 1484
Score = 28.3 bits (60), Expect = 9.3
Identities = 19/81 (23%), Positives = 33/81 (40%)
Query: 261 VCPKAGLKSYADPLEPPTIIEDPTLGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVY 320
VC GL + P +IE P + +A + G + Y ++ N+A T N
Sbjct: 158 VCVDGGLIDVENGNAPLPMIETPEICSEYATVTPGSSCYTISASYGLNLAELQTTYNCDA 217
Query: 321 GNILDTWEPTTGFTNPHSLAV 341
+ DT + F+ H + +
Sbjct: 218 LQVDDTICVSKKFSCQHRIEI 238
>U40422-5|AAA81448.2| 494|Caenorhabditis elegans Hypothetical
protein T24D8.1 protein.
Length = 494
Score = 28.3 bits (60), Expect = 9.3
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 8/136 (5%)
Query: 221 TLLLTIPAYSDTWSLNLPHSVTLLEHLDLVCVADRENMRIVCPKAGLKSYADPLE----- 275
T LLTI ++ L LP V+ ++ +D+ + + V + + YA LE
Sbjct: 280 TTLLTISTQANAVKLALPE-VSYMKAIDVWMGSCMAFVFGVMIEFTICHYAKNLEMLRGD 338
Query: 276 -PPTIIEDPTLGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNILDTWEPTTGFT 334
P++I D L +F D + ++ VRG + N+L+ EP
Sbjct: 339 GQPSLIVDTALSTLFGAARDIDDLVRKVATLNEEEGVRGDGEQHIALNMLNPEEPRLRSL 398
Query: 335 NPHSLAVTRNGSHLYV 350
N ++ VT NG+ +V
Sbjct: 399 NQNN-DVTANGTRYFV 413
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.137 0.426
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,130,427
Number of Sequences: 27539
Number of extensions: 453319
Number of successful extensions: 922
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 16
length of query: 370
length of database: 12,573,161
effective HSP length: 82
effective length of query: 288
effective length of database: 10,314,963
effective search space: 2970709344
effective search space used: 2970709344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)
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