BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001905-TA|BGIBMGA001905-PA|IPR013017|NHL, IPR000720|Peptidyl-glycine alpha-amidating monooxygenase, IPR011044|Quinoprotein amine dehydrogenase, beta chain-like, IPR001258|NHL repeat (370 letters) Database: celegans 27,539 sequences; 12,573,161 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U88175-5|AAB42278.2| 350|Caenorhabditis elegans Hypothetical pr... 206 2e-53 U80438-6|AAB37637.2| 663|Caenorhabditis elegans Hypothetical pr... 117 2e-26 Z46787-15|CAC42257.1| 791|Caenorhabditis elegans Hypothetical p... 31 0.99 Z35596-3|CAA84644.2| 791|Caenorhabditis elegans Hypothetical pr... 31 0.99 AF257518-1|AAF68999.1| 791|Caenorhabditis elegans HERG-like pot... 31 0.99 Z81456-2|CAB03811.1| 317|Caenorhabditis elegans Hypothetical pr... 30 2.3 Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical pr... 29 4.0 L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleo... 29 4.0 AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc fi... 29 4.0 Z68006-3|CAA91997.2| 633|Caenorhabditis elegans Hypothetical pr... 29 5.3 U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr... 28 9.3 U40422-5|AAA81448.2| 494|Caenorhabditis elegans Hypothetical pr... 28 9.3 >U88175-5|AAB42278.2| 350|Caenorhabditis elegans Hypothetical protein F21F3.1 protein. Length = 350 Score = 206 bits (503), Expect = 2e-53 Identities = 123/342 (35%), Positives = 191/342 (55%), Gaps = 19/342 (5%) Query: 26 DYFNYGANDDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHR 85 +YF YG D + +E V + +E+ S +GQ++ +++N G V FHR Sbjct: 23 EYF-YG---DEQQPIEEGAENSAVFEQDRELIGLFNPSKEIGQVSGLAVNKNGHIVAFHR 78 Query: 86 ADRVWDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHD 145 + RVWDE +FN+ + N D G I TI ++ V+ +GA +FYMPHGLT+D++ Sbjct: 79 SGRVWDEKSFNDHETF-NKDLGVINNKTIAIISREK-KVIDEFGAGLFYMPHGLTIDNNG 136 Query: 146 NVWVTDVAKHQVYKYTPSNHRYPTLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVA 205 + WVTDV HQV+K + +++GE G H FC PT VA+A G IFVA Sbjct: 137 DYWVTDVGSHQVHKIDAKTQKI-VMSLGEKMVPGEDQAH---FCKPTDVAVAKNGHIFVA 192 Query: 206 DGYCNNQIVKFNAAGTLLLTIPAYSD---TWSLNLPHSVTLLEHLDLVCVADRENMRIVC 262 DGYCN++I+KF+A G L+ I A ++ +PHS++L+E +++VCVADREN R+ C Sbjct: 193 DGYCNSRILKFDAKGNLMAQINAATEENQPSEFVVPHSLSLIEDMNIVCVADRENQRVQC 252 Query: 263 PKAGLKSYADPLEPPTIIEDPT-LGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYG 321 AGL L I T +GRVFA+ + V G S+++ + F+++ G Sbjct: 253 FSAGLSEGDRTLPTGIPITSATDIGRVFAIREREHYLIGVTG-NSEDVEAQMFSIDMQTG 311 Query: 322 NILDTWEPTTGFTNPHSLAVTRNGSHLYVSEIGPNKIWKFEL 363 +T+ G N H+LA+ +G ++VS++ P++I + L Sbjct: 312 K-TETF--AKGVRNTHALAIAADGV-MFVSQLEPSRILEIRL 349 >U80438-6|AAB37637.2| 663|Caenorhabditis elegans Hypothetical protein T19B4.1 protein. Length = 663 Score = 117 bits (281), Expect = 2e-26 Identities = 90/319 (28%), Positives = 147/319 (46%), Gaps = 34/319 (10%) Query: 64 LNVGQITAVSINSLGQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLD-PGSG 122 + +GQ+ ++ N+ Q ++F RA RVWD +TF+ N DK PI + ILV+ G+ Sbjct: 355 VKLGQVAGLAFNNEQQLLVFQRAGRVWDASTFDNYNIL--LDKKPIADPVILVISYSGNQ 412 Query: 123 SVL-HSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTL-TIGEPFTAGL 180 + L G FY+PHG+ +D V+ TDV H V K+ + + T GE G Sbjct: 413 TKLERKLGGGQFYLPHGIYVDKDGFVYTTDVGSHTVAKWKIEGNELKNIWTSGELLMPGS 472 Query: 181 PFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL--LTIPAYSDTWSLNLP 238 H +C PT + +++V DGYCN+++V + G + +P D NLP Sbjct: 473 DQHH---YCKPTGITRVE-DQLYVTDGYCNSRVVVLDLNGKRIRQFGLPG-EDAGQFNLP 527 Query: 239 HSVTLLEHLDLVCVADRENMRIVCPKAGLKSYADPLEPPTIIEDPTLGRVFAVTSHGDTI 298 H + + + + V DREN R+ + + +E + +++ SH D + Sbjct: 528 HDI-VSDSAGRLLVTDRENGRV----QHMTTQGHVIEE---FKSTMFTNIYSAASHEDYV 579 Query: 299 YAVNGPTSQNIAVRGFTV---NAVYGNILDTWEPTT---------GFTNPHSLAVTRNGS 346 + V G G V + G I + PTT F PH L V +G Sbjct: 580 FMVPGRPIMGHETEGIAVFVGRSGTGLIEYAFGPTTKGKREQMGPQFGQPHCLRVCPDGG 639 Query: 347 HLYVSEI--GPNKIWKFEL 363 H++V +I G ++W+F++ Sbjct: 640 HIFVGDIAEGKARLWQFKI 658 >Z46787-15|CAC42257.1| 791|Caenorhabditis elegans Hypothetical protein C30D11.1 protein. Length = 791 Score = 31.5 bits (68), Expect = 0.99 Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 114 ILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPT 169 +L+L + +++ W A I+Y L H + W+ ++K YT +N PT Sbjct: 225 VLLLLMATFALIAHWLACIWYAIGSAELSHKEYTWLHQLSKQLAQPYTSTNGTIPT 280 >Z35596-3|CAA84644.2| 791|Caenorhabditis elegans Hypothetical protein C30D11.1 protein. Length = 791 Score = 31.5 bits (68), Expect = 0.99 Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 114 ILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPT 169 +L+L + +++ W A I+Y L H + W+ ++K YT +N PT Sbjct: 225 VLLLLMATFALIAHWLACIWYAIGSAELSHKEYTWLHQLSKQLAQPYTSTNGTIPT 280 >AF257518-1|AAF68999.1| 791|Caenorhabditis elegans HERG-like potassium channel protein. Length = 791 Score = 31.5 bits (68), Expect = 0.99 Identities = 15/56 (26%), Positives = 27/56 (48%) Query: 114 ILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPT 169 +L+L + +++ W A I+Y L H + W+ ++K YT +N PT Sbjct: 225 VLLLLMATFALIAHWLACIWYAIGSAELSHKEYTWLHQLSKQLAQPYTSTNGTIPT 280 >Z81456-2|CAB03811.1| 317|Caenorhabditis elegans Hypothetical protein B0462.3 protein. Length = 317 Score = 30.3 bits (65), Expect = 2.3 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 6/93 (6%) Query: 37 LKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHRADRVWDENTFN 96 LK+L + ++ ++L PQ P+ ++VG ++AV S I R+ DE TF+ Sbjct: 43 LKSLNVRNAEIRIIL-PQH----PEIHISVGSMSAVLERSAANVRIIDRSRENSDEKTFD 97 Query: 97 ESNAYQNF-DKGPIVEDTILVLDPGSGSVLHSW 128 ++ NF ++ ++ ++++P H+W Sbjct: 98 ITSGCLNFTERDYLLHFEDVIINPRINVSCHTW 130 >Z81551-1|CAB04483.2| 335|Caenorhabditis elegans Hypothetical protein F56A12.1 protein. Length = 335 Score = 29.5 bits (63), Expect = 4.0 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%) Query: 292 TSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNILDTWEPTTGFT-NP 336 T+ G + P S N+A F +N +YG + D+ FT NP Sbjct: 290 TNGGSDFLPIITPQSFNLAAAPFNMNMIYGTLRDSQSDNDQFTFNP 335 >L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleoli protein 1 protein. Length = 851 Score = 29.5 bits (63), Expect = 4.0 Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 191 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 223 P V I S GE+ VAD + N + F+ GT++ Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798 >AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc finger protein Ncl-1 protein. Length = 851 Score = 29.5 bits (63), Expect = 4.0 Identities = 13/33 (39%), Positives = 19/33 (57%) Query: 191 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 223 P V I S GE+ VAD + N + F+ GT++ Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798 >Z68006-3|CAA91997.2| 633|Caenorhabditis elegans Hypothetical protein K09C8.4 protein. Length = 633 Score = 29.1 bits (62), Expect = 5.3 Identities = 11/38 (28%), Positives = 17/38 (44%) Query: 322 NILDTWEPTTGFTNPHSLAVTRNGSHLYVSEIGPNKIW 359 NI D W+ F N + N S Y+++ G +W Sbjct: 142 NIFDLWKQFRNFNNSQVFGMVENLSDWYLNKDGKKSVW 179 >U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical protein T01C4.1 protein. Length = 1484 Score = 28.3 bits (60), Expect = 9.3 Identities = 19/81 (23%), Positives = 33/81 (40%) Query: 261 VCPKAGLKSYADPLEPPTIIEDPTLGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVY 320 VC GL + P +IE P + +A + G + Y ++ N+A T N Sbjct: 158 VCVDGGLIDVENGNAPLPMIETPEICSEYATVTPGSSCYTISASYGLNLAELQTTYNCDA 217 Query: 321 GNILDTWEPTTGFTNPHSLAV 341 + DT + F+ H + + Sbjct: 218 LQVDDTICVSKKFSCQHRIEI 238 >U40422-5|AAA81448.2| 494|Caenorhabditis elegans Hypothetical protein T24D8.1 protein. Length = 494 Score = 28.3 bits (60), Expect = 9.3 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 8/136 (5%) Query: 221 TLLLTIPAYSDTWSLNLPHSVTLLEHLDLVCVADRENMRIVCPKAGLKSYADPLE----- 275 T LLTI ++ L LP V+ ++ +D+ + + V + + YA LE Sbjct: 280 TTLLTISTQANAVKLALPE-VSYMKAIDVWMGSCMAFVFGVMIEFTICHYAKNLEMLRGD 338 Query: 276 -PPTIIEDPTLGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNILDTWEPTTGFT 334 P++I D L +F D + ++ VRG + N+L+ EP Sbjct: 339 GQPSLIVDTALSTLFGAARDIDDLVRKVATLNEEEGVRGDGEQHIALNMLNPEEPRLRSL 398 Query: 335 NPHSLAVTRNGSHLYV 350 N ++ VT NG+ +V Sbjct: 399 NQNN-DVTANGTRYFV 413 Database: celegans Posted date: Oct 5, 2007 11:13 AM Number of letters in database: 12,573,161 Number of sequences in database: 27,539 Lambda K H 0.319 0.137 0.426 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,130,427 Number of Sequences: 27539 Number of extensions: 453319 Number of successful extensions: 922 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 901 Number of HSP's gapped (non-prelim): 16 length of query: 370 length of database: 12,573,161 effective HSP length: 82 effective length of query: 288 effective length of database: 10,314,963 effective search space: 2970709344 effective search space used: 2970709344 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 60 (28.3 bits)
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