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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001905-TA|BGIBMGA001905-PA|IPR013017|NHL,
IPR000720|Peptidyl-glycine alpha-amidating monooxygenase,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
         (370 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical pr...   206   2e-53
U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical pr...   117   2e-26
Z46787-15|CAC42257.1|  791|Caenorhabditis elegans Hypothetical p...    31   0.99 
Z35596-3|CAA84644.2|  791|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AF257518-1|AAF68999.1|  791|Caenorhabditis elegans HERG-like pot...    31   0.99 
Z81456-2|CAB03811.1|  317|Caenorhabditis elegans Hypothetical pr...    30   2.3  
Z81551-1|CAB04483.2|  335|Caenorhabditis elegans Hypothetical pr...    29   4.0  
L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleo...    29   4.0  
AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc fi...    29   4.0  
Z68006-3|CAA91997.2|  633|Caenorhabditis elegans Hypothetical pr...    29   5.3  
U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical pr...    28   9.3  
U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical pr...    28   9.3  

>U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical
           protein F21F3.1 protein.
          Length = 350

 Score =  206 bits (503), Expect = 2e-53
 Identities = 123/342 (35%), Positives = 191/342 (55%), Gaps = 19/342 (5%)

Query: 26  DYFNYGANDDVLKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHR 85
           +YF YG   D  + +E       V  + +E+      S  +GQ++ +++N  G  V FHR
Sbjct: 23  EYF-YG---DEQQPIEEGAENSAVFEQDRELIGLFNPSKEIGQVSGLAVNKNGHIVAFHR 78

Query: 86  ADRVWDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHD 145
           + RVWDE +FN+   + N D G I   TI ++      V+  +GA +FYMPHGLT+D++ 
Sbjct: 79  SGRVWDEKSFNDHETF-NKDLGVINNKTIAIISREK-KVIDEFGAGLFYMPHGLTIDNNG 136

Query: 146 NVWVTDVAKHQVYKYTPSNHRYPTLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVA 205
           + WVTDV  HQV+K      +   +++GE    G    H   FC PT VA+A  G IFVA
Sbjct: 137 DYWVTDVGSHQVHKIDAKTQKI-VMSLGEKMVPGEDQAH---FCKPTDVAVAKNGHIFVA 192

Query: 206 DGYCNNQIVKFNAAGTLLLTIPAYSD---TWSLNLPHSVTLLEHLDLVCVADRENMRIVC 262
           DGYCN++I+KF+A G L+  I A ++        +PHS++L+E +++VCVADREN R+ C
Sbjct: 193 DGYCNSRILKFDAKGNLMAQINAATEENQPSEFVVPHSLSLIEDMNIVCVADRENQRVQC 252

Query: 263 PKAGLKSYADPLEPPTIIEDPT-LGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYG 321
             AGL      L     I   T +GRVFA+      +  V G  S+++  + F+++   G
Sbjct: 253 FSAGLSEGDRTLPTGIPITSATDIGRVFAIREREHYLIGVTG-NSEDVEAQMFSIDMQTG 311

Query: 322 NILDTWEPTTGFTNPHSLAVTRNGSHLYVSEIGPNKIWKFEL 363
              +T+    G  N H+LA+  +G  ++VS++ P++I +  L
Sbjct: 312 K-TETF--AKGVRNTHALAIAADGV-MFVSQLEPSRILEIRL 349


>U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical
           protein T19B4.1 protein.
          Length = 663

 Score =  117 bits (281), Expect = 2e-26
 Identities = 90/319 (28%), Positives = 147/319 (46%), Gaps = 34/319 (10%)

Query: 64  LNVGQITAVSINSLGQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLD-PGSG 122
           + +GQ+  ++ N+  Q ++F RA RVWD +TF+  N     DK PI +  ILV+   G+ 
Sbjct: 355 VKLGQVAGLAFNNEQQLLVFQRAGRVWDASTFDNYNIL--LDKKPIADPVILVISYSGNQ 412

Query: 123 SVL-HSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTL-TIGEPFTAGL 180
           + L    G   FY+PHG+ +D    V+ TDV  H V K+    +    + T GE    G 
Sbjct: 413 TKLERKLGGGQFYLPHGIYVDKDGFVYTTDVGSHTVAKWKIEGNELKNIWTSGELLMPGS 472

Query: 181 PFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL--LTIPAYSDTWSLNLP 238
              H   +C PT +      +++V DGYCN+++V  +  G  +    +P   D    NLP
Sbjct: 473 DQHH---YCKPTGITRVE-DQLYVTDGYCNSRVVVLDLNGKRIRQFGLPG-EDAGQFNLP 527

Query: 239 HSVTLLEHLDLVCVADRENMRIVCPKAGLKSYADPLEPPTIIEDPTLGRVFAVTSHGDTI 298
           H + + +    + V DREN R+      + +    +E     +      +++  SH D +
Sbjct: 528 HDI-VSDSAGRLLVTDRENGRV----QHMTTQGHVIEE---FKSTMFTNIYSAASHEDYV 579

Query: 299 YAVNGPTSQNIAVRGFTV---NAVYGNILDTWEPTT---------GFTNPHSLAVTRNGS 346
           + V G         G  V    +  G I   + PTT          F  PH L V  +G 
Sbjct: 580 FMVPGRPIMGHETEGIAVFVGRSGTGLIEYAFGPTTKGKREQMGPQFGQPHCLRVCPDGG 639

Query: 347 HLYVSEI--GPNKIWKFEL 363
           H++V +I  G  ++W+F++
Sbjct: 640 HIFVGDIAEGKARLWQFKI 658


>Z46787-15|CAC42257.1|  791|Caenorhabditis elegans Hypothetical
           protein C30D11.1 protein.
          Length = 791

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 114 ILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPT 169
           +L+L   + +++  W A I+Y      L H +  W+  ++K     YT +N   PT
Sbjct: 225 VLLLLMATFALIAHWLACIWYAIGSAELSHKEYTWLHQLSKQLAQPYTSTNGTIPT 280


>Z35596-3|CAA84644.2|  791|Caenorhabditis elegans Hypothetical
           protein C30D11.1 protein.
          Length = 791

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 114 ILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPT 169
           +L+L   + +++  W A I+Y      L H +  W+  ++K     YT +N   PT
Sbjct: 225 VLLLLMATFALIAHWLACIWYAIGSAELSHKEYTWLHQLSKQLAQPYTSTNGTIPT 280


>AF257518-1|AAF68999.1|  791|Caenorhabditis elegans HERG-like
           potassium channel protein.
          Length = 791

 Score = 31.5 bits (68), Expect = 0.99
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 114 ILVLDPGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPT 169
           +L+L   + +++  W A I+Y      L H +  W+  ++K     YT +N   PT
Sbjct: 225 VLLLLMATFALIAHWLACIWYAIGSAELSHKEYTWLHQLSKQLAQPYTSTNGTIPT 280


>Z81456-2|CAB03811.1|  317|Caenorhabditis elegans Hypothetical
           protein B0462.3 protein.
          Length = 317

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 6/93 (6%)

Query: 37  LKNLESQLSKDEVVLRPQEVKDWPQQSLNVGQITAVSINSLGQPVIFHRADRVWDENTFN 96
           LK+L  + ++  ++L PQ     P+  ++VG ++AV   S     I  R+    DE TF+
Sbjct: 43  LKSLNVRNAEIRIIL-PQH----PEIHISVGSMSAVLERSAANVRIIDRSRENSDEKTFD 97

Query: 97  ESNAYQNF-DKGPIVEDTILVLDPGSGSVLHSW 128
            ++   NF ++  ++    ++++P      H+W
Sbjct: 98  ITSGCLNFTERDYLLHFEDVIINPRINVSCHTW 130


>Z81551-1|CAB04483.2|  335|Caenorhabditis elegans Hypothetical
           protein F56A12.1 protein.
          Length = 335

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 292 TSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNILDTWEPTTGFT-NP 336
           T+ G     +  P S N+A   F +N +YG + D+      FT NP
Sbjct: 290 TNGGSDFLPIITPQSFNLAAAPFNMNMIYGTLRDSQSDNDQFTFNP 335


>L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleoli
           protein 1 protein.
          Length = 851

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 191 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 223
           P  V I S GE+ VAD + N  +  F+  GT++
Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798


>AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc
           finger protein Ncl-1 protein.
          Length = 851

 Score = 29.5 bits (63), Expect = 4.0
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 191 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 223
           P  V I S GE+ VAD + N  +  F+  GT++
Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798


>Z68006-3|CAA91997.2|  633|Caenorhabditis elegans Hypothetical
           protein K09C8.4 protein.
          Length = 633

 Score = 29.1 bits (62), Expect = 5.3
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 322 NILDTWEPTTGFTNPHSLAVTRNGSHLYVSEIGPNKIW 359
           NI D W+    F N     +  N S  Y+++ G   +W
Sbjct: 142 NIFDLWKQFRNFNNSQVFGMVENLSDWYLNKDGKKSVW 179


>U70858-7|AAB09177.1| 1484|Caenorhabditis elegans Hypothetical
           protein T01C4.1 protein.
          Length = 1484

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 19/81 (23%), Positives = 33/81 (40%)

Query: 261 VCPKAGLKSYADPLEPPTIIEDPTLGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVY 320
           VC   GL    +   P  +IE P +   +A  + G + Y ++     N+A    T N   
Sbjct: 158 VCVDGGLIDVENGNAPLPMIETPEICSEYATVTPGSSCYTISASYGLNLAELQTTYNCDA 217

Query: 321 GNILDTWEPTTGFTNPHSLAV 341
             + DT   +  F+  H + +
Sbjct: 218 LQVDDTICVSKKFSCQHRIEI 238


>U40422-5|AAA81448.2|  494|Caenorhabditis elegans Hypothetical
           protein T24D8.1 protein.
          Length = 494

 Score = 28.3 bits (60), Expect = 9.3
 Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 8/136 (5%)

Query: 221 TLLLTIPAYSDTWSLNLPHSVTLLEHLDLVCVADRENMRIVCPKAGLKSYADPLE----- 275
           T LLTI   ++   L LP  V+ ++ +D+   +    +  V  +  +  YA  LE     
Sbjct: 280 TTLLTISTQANAVKLALPE-VSYMKAIDVWMGSCMAFVFGVMIEFTICHYAKNLEMLRGD 338

Query: 276 -PPTIIEDPTLGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNILDTWEPTTGFT 334
             P++I D  L  +F      D +       ++   VRG     +  N+L+  EP     
Sbjct: 339 GQPSLIVDTALSTLFGAARDIDDLVRKVATLNEEEGVRGDGEQHIALNMLNPEEPRLRSL 398

Query: 335 NPHSLAVTRNGSHLYV 350
           N ++  VT NG+  +V
Sbjct: 399 NQNN-DVTANGTRYFV 413


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,130,427
Number of Sequences: 27539
Number of extensions: 453319
Number of successful extensions: 922
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 16
length of query: 370
length of database: 12,573,161
effective HSP length: 82
effective length of query: 288
effective length of database: 10,314,963
effective search space: 2970709344
effective search space used: 2970709344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)

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