GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001905-TA|BGIBMGA001905-PA|IPR013017|NHL,
IPR000720|Peptidyl-glycine alpha-amidating monooxygenase,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
         (370 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              26   0.59 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   5.5  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   5.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   7.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   7.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.8 bits (54), Expect = 0.59
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 239 HSVTLLEHLDLVCVADRENMRIVCPKAG 266
           + +  + H+D   +   E +R+ CP AG
Sbjct: 489 YGLPFIRHMDKKAIVAGETLRVTCPVAG 516


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 3/44 (6%)

Query: 316 VNAVYGN--ILDT-WEPTTGFTNPHSLAVTRNGSHLYVSEIGPN 356
           +N +YG   + D  W PT   +N  S A+T N     +  I P+
Sbjct: 84  LNQIYGGQFVRDLIWTPTVYVSNEPSSAITGNNVKDVLVSIDPS 127


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 82  IFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHS 127
           I+ ++D +W  +    ++    FD+  I   T LV   GS S + S
Sbjct: 117 IYVKSDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPS 162


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 91  DENTFNESNAYQNFDKGPIVEDT 113
           +E+ FN+ N +Q  DK   +E+T
Sbjct: 56  NESEFNDENYWQCNDKKTDIEET 78


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 7.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 111 EDTILVLDPGSGSVLHSWGAY 131
           E  ++ +D G    +H++GAY
Sbjct: 162 EHLLMTVDAGDSMFVHTFGAY 182


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,991
Number of Sequences: 429
Number of extensions: 5141
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 370
length of database: 140,377
effective HSP length: 59
effective length of query: 311
effective length of database: 115,066
effective search space: 35785526
effective search space used: 35785526
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)