GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001905-TA|BGIBMGA001905-PA|IPR013017|NHL,
IPR000720|Peptidyl-glycine alpha-amidating monooxygenase,
IPR011044|Quinoprotein amine dehydrogenase, beta chain-like,
IPR001258|NHL repeat
         (370 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76020.1 68414.m08826 expressed protein                             33   0.40 
At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase fa...    31   1.2  
At1g23890.2 68414.m03013 NHL repeat-containing protein contains ...    31   1.2  
At1g23890.1 68414.m03014 NHL repeat-containing protein contains ...    31   1.2  
At1g14120.1 68414.m01669 2-oxoglutarate-dependent dioxygenase, p...    29   3.8  

>At1g76020.1 68414.m08826 expressed protein
          Length = 225

 Score = 32.7 bits (71), Expect = 0.40
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 9/70 (12%)

Query: 119 PGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTLTIGEPFTA 178
           P     LH +G+ +  + H L L +HDN +VT  A H V     + H   T ++ E F  
Sbjct: 61  PPLKQALHHYGSRVALLLHLLPLPYHDNAYVTSRALHIV----NTVHANATFSLLEGF-- 114

Query: 179 GLPFRHRVLF 188
              F+H+ LF
Sbjct: 115 ---FKHQSLF 121


>At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase
           family protein low similarity to SP|P95649 CbbY protein
           {Rhodobacter sphaeroides}; contains InterPro accession
           IPR005834: Haloacid dehalogenase-like hydrolase
          Length = 1055

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%)

Query: 136 PHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTLT-IGEPFTAGLPFRHRVLFCMPTSV 194
           P G+   +   +++TD   H++ K  P   R  TL   G+        +   L   P  +
Sbjct: 805 PLGVLCANDGQIYLTDSYNHKIKKLDPVTKRVVTLAGTGKAGFKDGKVKGAQL-SEPAGL 863

Query: 195 AIASTGEIFVADGYCNNQIVKF 216
           AI   G +FVAD   NN ++++
Sbjct: 864 AITENGRLFVAD--TNNSLIRY 883


>At1g23890.2 68414.m03013 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 400

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 274 LEPPTIIEDPTLGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNILDTWEPTTGF 333
           L P TI   P    +  + S G T Y  + P S +  +  F  +   G++ D     + F
Sbjct: 42  LNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVINRFAGDGSSGHV-DGKAGNSRF 100

Query: 334 TNPHSLAVTRNGSHLYVSE 352
           + P   AV   G ++YV++
Sbjct: 101 SKPRGFAVDAKG-NVYVAD 118


>At1g23890.1 68414.m03014 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 261

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 274 LEPPTIIEDPTLGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNILDTWEPTTGF 333
           L P TI   P    +  + S G T Y  + P S +  +  F  +   G++ D     + F
Sbjct: 42  LNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVINRFAGDGSSGHV-DGKAGNSRF 100

Query: 334 TNPHSLAVTRNGSHLYVSE 352
           + P   AV   G ++YV++
Sbjct: 101 SKPRGFAVDAKG-NVYVAD 118


>At1g14120.1 68414.m01669 2-oxoglutarate-dependent dioxygenase,
           putative similar to adventitious rooting related
           oxygenase ARRO-1 from Malus x domestica, gi|3492806;
           contains Pfam domain PF03171, 2OG-Fe(II) oxygenase
           superfamily
          Length = 312

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 32  ANDDVLKNLESQLSKDEVVLRPQEVKDWPQQ-SLNVGQITAVSINSLGQPVIFH 84
           A DD+ ++L  +L++   V+ P  ++ WP Q  +N       S+  LG  VI H
Sbjct: 124 ATDDLARSLARRLAESYGVVEPNFLRGWPSQFRMNKYHFKPDSVGKLG--VILH 175


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,553,238
Number of Sequences: 28952
Number of extensions: 419497
Number of successful extensions: 813
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 809
Number of HSP's gapped (non-prelim): 10
length of query: 370
length of database: 12,070,560
effective HSP length: 82
effective length of query: 288
effective length of database: 9,696,496
effective search space: 2792590848
effective search space used: 2792590848
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)