BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001905-TA|BGIBMGA001905-PA|IPR013017|NHL, IPR000720|Peptidyl-glycine alpha-amidating monooxygenase, IPR011044|Quinoprotein amine dehydrogenase, beta chain-like, IPR001258|NHL repeat (370 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g76020.1 68414.m08826 expressed protein 33 0.40 At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase fa... 31 1.2 At1g23890.2 68414.m03013 NHL repeat-containing protein contains ... 31 1.2 At1g23890.1 68414.m03014 NHL repeat-containing protein contains ... 31 1.2 At1g14120.1 68414.m01669 2-oxoglutarate-dependent dioxygenase, p... 29 3.8 >At1g76020.1 68414.m08826 expressed protein Length = 225 Score = 32.7 bits (71), Expect = 0.40 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 9/70 (12%) Query: 119 PGSGSVLHSWGAYIFYMPHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTLTIGEPFTA 178 P LH +G+ + + H L L +HDN +VT A H V + H T ++ E F Sbjct: 61 PPLKQALHHYGSRVALLLHLLPLPYHDNAYVTSRALHIV----NTVHANATFSLLEGF-- 114 Query: 179 GLPFRHRVLF 188 F+H+ LF Sbjct: 115 ---FKHQSLF 121 >At1g56500.1 68414.m06497 haloacid dehalogenase-like hydrolase family protein low similarity to SP|P95649 CbbY protein {Rhodobacter sphaeroides}; contains InterPro accession IPR005834: Haloacid dehalogenase-like hydrolase Length = 1055 Score = 31.1 bits (67), Expect = 1.2 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 4/82 (4%) Query: 136 PHGLTLDHHDNVWVTDVAKHQVYKYTPSNHRYPTLT-IGEPFTAGLPFRHRVLFCMPTSV 194 P G+ + +++TD H++ K P R TL G+ + L P + Sbjct: 805 PLGVLCANDGQIYLTDSYNHKIKKLDPVTKRVVTLAGTGKAGFKDGKVKGAQL-SEPAGL 863 Query: 195 AIASTGEIFVADGYCNNQIVKF 216 AI G +FVAD NN ++++ Sbjct: 864 AITENGRLFVAD--TNNSLIRY 883 >At1g23890.2 68414.m03013 NHL repeat-containing protein contains Pfam profile PF01436: NHL repeat Length = 400 Score = 31.1 bits (67), Expect = 1.2 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 274 LEPPTIIEDPTLGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNILDTWEPTTGF 333 L P TI P + + S G T Y + P S + + F + G++ D + F Sbjct: 42 LNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVINRFAGDGSSGHV-DGKAGNSRF 100 Query: 334 TNPHSLAVTRNGSHLYVSE 352 + P AV G ++YV++ Sbjct: 101 SKPRGFAVDAKG-NVYVAD 118 >At1g23890.1 68414.m03014 NHL repeat-containing protein contains Pfam profile PF01436: NHL repeat Length = 261 Score = 31.1 bits (67), Expect = 1.2 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 2/79 (2%) Query: 274 LEPPTIIEDPTLGRVFAVTSHGDTIYAVNGPTSQNIAVRGFTVNAVYGNILDTWEPTTGF 333 L P TI P + + S G T Y + P S + + F + G++ D + F Sbjct: 42 LNPYTIHALPGSSNLIVLDSSGSTFYTTSFPLSVDSVINRFAGDGSSGHV-DGKAGNSRF 100 Query: 334 TNPHSLAVTRNGSHLYVSE 352 + P AV G ++YV++ Sbjct: 101 SKPRGFAVDAKG-NVYVAD 118 >At1g14120.1 68414.m01669 2-oxoglutarate-dependent dioxygenase, putative similar to adventitious rooting related oxygenase ARRO-1 from Malus x domestica, gi|3492806; contains Pfam domain PF03171, 2OG-Fe(II) oxygenase superfamily Length = 312 Score = 29.5 bits (63), Expect = 3.8 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%) Query: 32 ANDDVLKNLESQLSKDEVVLRPQEVKDWPQQ-SLNVGQITAVSINSLGQPVIFH 84 A DD+ ++L +L++ V+ P ++ WP Q +N S+ LG VI H Sbjct: 124 ATDDLARSLARRLAESYGVVEPNFLRGWPSQFRMNKYHFKPDSVGKLG--VILH 175 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.319 0.137 0.426 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,553,238 Number of Sequences: 28952 Number of extensions: 419497 Number of successful extensions: 813 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 1 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 809 Number of HSP's gapped (non-prelim): 10 length of query: 370 length of database: 12,070,560 effective HSP length: 82 effective length of query: 288 effective length of database: 9,696,496 effective search space: 2792590848 effective search space used: 2792590848 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 60 (28.3 bits)
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