GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001904-TA|BGIBMGA001904-PA|IPR006631|Protein of unknown
function DM4/12
         (279 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    27   0.21 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   3.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   3.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.4  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 11/72 (15%)

Query: 24  KDELAKENIPHS---RQKRILWITNDGRLAL-PPGTTMAIT-------PSLSMPFVRHPP 72
           KD +  E  P +   R++++    N+ R+ + PPG  + +T       PS+  P    PP
Sbjct: 107 KDAVQHERGPRNSTLRRQQMSSYYNESRVMMSPPGNVLNLTMPKYEPNPSIIDPGPALPP 166

Query: 73  KGFLSNMTISFP 84
            GFL N  +  P
Sbjct: 167 AGFLCNNYLPLP 178


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 33  PHSRQKRILWITNDGRLALPPGTTMAITPSLSMPFVR 69
           PH +Q  I    N G+   PPG T A  PS   P++R
Sbjct: 204 PH-QQPPIQQQPNQGQQ--PPGNTAAALPSPLYPWMR 237


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 3/37 (8%)

Query: 33  PHSRQKRILWITNDGRLALPPGTTMAITPSLSMPFVR 69
           PH +Q  I    N G+   PPG T A  PS   P++R
Sbjct: 206 PH-QQPPIQQQPNQGQQ--PPGNTAAALPSPLYPWMR 239


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 43  ITNDGRLALPPGTTMAITPSLSM--PFVRHPP 72
           +T+ G + LP  +T   +PS+S+  P++   P
Sbjct: 693 LTSPGGMVLPSPSTSVASPSVSVASPYMLQSP 724


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 2/32 (6%)

Query: 43  ITNDGRLALPPGTTMAITPSLSM--PFVRHPP 72
           +T+ G + LP  +T   +PS+S+  P++   P
Sbjct: 585 LTSPGGMVLPSPSTSVASPSVSVASPYMLQSP 616


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.136    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,339
Number of Sequences: 317
Number of extensions: 2999
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 279
length of database: 114,650
effective HSP length: 56
effective length of query: 223
effective length of database: 96,898
effective search space: 21608254
effective search space used: 21608254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)